Strain Fitness in Pseudomonas sp. RS175 around PFR28_01006

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sn-glycero-3-phosphocholine (C) 10 mM
1,089,630	+		PFR28_01004	0.43	-0.3
1,089,630	+		PFR28_01004	0.43	+0.8
1,089,631	-		PFR28_01004	0.43	-2.3
1,089,769	+		PFR28_01004	0.66	-1.6
1,089,769	+		PFR28_01004	0.66	-0.1
1,089,769	+		PFR28_01004	0.66	-1.4
1,089,770	-		PFR28_01004	0.67	-1.7
1,089,770	-		PFR28_01004	0.67	-0.7
1,089,770	-		PFR28_01004	0.67	-1.7
1,089,770	-		PFR28_01004	0.67	-1.5
1,089,778	+		PFR28_01004	0.68	-1.3
1,089,779	-		PFR28_01004	0.68	-0.9
1,089,779	-		PFR28_01004	0.68	+0.1
1,089,956	+				-1.6
1,089,957	-				-0.9
1,090,008	+				-0.1
1,090,008	+				+1.0
1,090,008	+				-0.4
1,090,008	+				-0.7
1,090,008	+				-0.3
1,090,009	-				-1.0
1,090,009	-				-1.0
1,090,009	-				+0.3
1,090,009	-				-1.4
1,090,009	-				-0.5
1,090,010	+				-1.0
1,090,010	+				+0.2
1,090,010	+				+0.6
1,090,010	+				-0.2
1,090,010	+				+0.2
1,090,010	+				+0.1
1,090,011	-				+0.4
1,090,011	-				+0.0
1,090,011	-				-0.9
1,090,011	-				-1.1
1,090,011	-				+1.1
1,090,011	-				+0.7
1,090,011	-				+0.1
1,090,011	-				-1.4
1,090,011	-				-1.3
1,090,011	-				+0.4
1,090,011	-				+0.6
1,090,011	-				-1.5
1,090,046	+				+0.1
1,090,046	+				-0.2
1,090,066	+				+0.6
1,090,066	+				-0.3
1,090,066	+				+0.4
1,090,066	+				-1.0
1,090,067	-				-1.5
1,090,067	-				-1.0
1,090,109	+		PFR28_01005	0.11	-1.7
1,090,116	-		PFR28_01005	0.13	-1.9
1,090,130	+		PFR28_01005	0.15	-0.4
1,090,130	+		PFR28_01005	0.15	-0.1
1,090,175	+		PFR28_01005	0.24	-0.6
1,090,199	+		PFR28_01005	0.28	-1.0
1,090,199	+		PFR28_01005	0.28	-1.5
1,090,212	+		PFR28_01005	0.31	-1.4
1,090,212	+		PFR28_01005	0.31	-0.7
1,090,212	+		PFR28_01005	0.31	-1.7
1,090,212	+		PFR28_01005	0.31	+0.4
1,090,213	-		PFR28_01005	0.31	-1.1
1,090,213	-		PFR28_01005	0.31	-2.9
1,090,213	-		PFR28_01005	0.31	-0.4
1,090,213	-		PFR28_01005	0.31	-2.1
1,090,213	-		PFR28_01005	0.31	-1.2
1,090,213	-		PFR28_01005	0.31	-0.4
1,090,213	-		PFR28_01005	0.31	-0.8
1,090,497	-		PFR28_01005	0.83	+1.0
1,090,774	+		PFR28_01006	0.17	-1.9
1,090,774	+		PFR28_01006	0.17	-0.3
1,090,774	+		PFR28_01006	0.17	+0.4
1,090,775	-		PFR28_01006	0.17	-2.9
1,090,775	-		PFR28_01006	0.17	-2.7
1,091,194	+		PFR28_01006	0.51	+0.2
1,091,194	+		PFR28_01006	0.51	-2.4
1,091,194	+		PFR28_01006	0.51	-3.4
1,091,194	+		PFR28_01006	0.51	-1.0
1,091,194	+		PFR28_01006	0.51	-0.1
1,091,194	+		PFR28_01006	0.51	-1.2
1,091,194	+		PFR28_01006	0.51	+0.2
1,091,195	-		PFR28_01006	0.51	-2.2
1,091,195	-		PFR28_01006	0.51	-1.7
1,091,195	-		PFR28_01006	0.51	-0.5
1,091,195	-		PFR28_01006	0.51	-1.5
1,091,195	-		PFR28_01006	0.51	+1.0
1,091,202	+		PFR28_01006	0.52	-1.2
1,091,203	-		PFR28_01006	0.52	-2.6
1,091,345	+		PFR28_01006	0.63	-1.6
1,091,351	+		PFR28_01006	0.64	-0.0
1,091,530	+		PFR28_01006	0.78	-0.9
1,091,530	+		PFR28_01006	0.78	+0.0
1,091,627	-		PFR28_01006	0.86	-1.4
1,091,953	+		PFR28_01007	0.29	+0.9
1,091,979	+		PFR28_01007	0.38	+0.9
1,091,979	+		PFR28_01007	0.38	-0.5
1,091,979	+		PFR28_01007	0.38	+0.8
1,091,979	+		PFR28_01007	0.38	+1.0
1,091,980	-		PFR28_01007	0.38	-1.7
1,091,980	-		PFR28_01007	0.38	-0.5
1,092,002	+		PFR28_01007	0.45	-1.4
1,092,016	+		PFR28_01007	0.50	-1.0
1,092,016	+		PFR28_01007	0.50	+0.6
1,092,016	+		PFR28_01007	0.50	+0.0
1,092,016	+		PFR28_01007	0.50	-0.1
1,092,016	+		PFR28_01007	0.50	-2.1
1,092,017	-		PFR28_01007	0.50	+0.9
1,092,017	-		PFR28_01007	0.50	+0.2
1,092,017	-		PFR28_01007	0.50	+0.1
1,092,017	-		PFR28_01007	0.50	+1.2
1,092,017	-		PFR28_01007	0.50	+1.4
1,092,017	-		PFR28_01007	0.50	-0.6
1,092,017	-		PFR28_01007	0.50	-0.8
1,092,017	-		PFR28_01007	0.50	-0.7
1,092,154	+				-0.9
1,092,154	+				-0.0
1,092,154	+				+1.3
1,092,154	+				-0.1
1,092,155	-				+0.6
1,092,155	-				-0.9
1,092,155	-				-0.1
1,092,164	+				+0.5
1,092,164	+				+0.4
1,092,165	-				+1.5
1,092,165	-				+0.2
1,092,165	-				+1.3
1,092,165	-				+0.2
1,092,165	-				-0.2
1,092,214	-				-2.4
1,092,236	+				+0.4
1,092,236	+				+0.5
1,092,236	+				+1.3
1,092,236	+				-0.2
1,092,236	+				+0.3
1,092,236	+				-0.5
1,092,236	+				-0.9
1,092,236	+				+0.5
1,092,237	-				+0.1
1,092,237	-				+0.5
1,092,237	-				-0.0
1,092,237	-				+0.5
1,092,266	+				+0.2
1,092,266	+				+0.3
1,092,266	+				+0.5
1,092,267	-				-0.5
1,092,267	-				+0.8
1,092,356	-				-0.5
1,092,380	+				+0.8
1,092,380	+				-0.1
1,092,380	+				+0.2
1,092,380	+				+1.0
1,092,380	+				+0.0
1,092,380	+				+0.4
1,092,380	+				-1.0
1,092,380	+				-0.4
1,092,381	-				-1.8
1,092,381	-				+0.9
1,092,381	-				+1.7
1,092,381	-				-1.6
1,092,381	-				-3.4
1,092,381	-				+0.0
1,092,381	-				-0.9
1,092,381	-				-0.2
1,092,381	-				+0.5
1,092,381	-				+0.4
1,092,381	-				-0.4
1,092,543	+				-2.5
1,092,543	+				-0.1
1,092,543	+				-0.1
1,092,543	+				+1.6
1,092,543	+				-0.4
1,092,543	+				+0.5
1,092,543	+				-0.3
1,092,543	+				-0.5
1,092,544	-				+0.1
1,092,544	-				-0.4
1,092,621	+		PFR28_01008	0.12	-0.5
1,092,660	+		PFR28_01008	0.16	+1.0
1,092,684	-		PFR28_01008	0.18	+0.7
1,092,715	+		PFR28_01008	0.22	-0.4
1,092,715	+		PFR28_01008	0.22	+0.5
1,092,716	-		PFR28_01008	0.22	-0.7
1,092,716	-		PFR28_01008	0.22	+0.2
1,092,716	-		PFR28_01008	0.22	-0.1