Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00902 and PFR28_00903 are separated by 106 nucleotides PFR28_00903 and PFR28_00904 are separated by 77 nucleotides PFR28_00904 and PFR28_00905 are separated by 223 nucleotides
PFR28_00902: PFR28_00902 - 5-methylthioadenosine/S-adenosylhomocysteine deaminase, at 979,592 to 980,923
_00902
PFR28_00903: PFR28_00903 - Methylthioribose-1-phosphate isomerase, at 981,030 to 982,106
_00903
PFR28_00904: PFR28_00904 - hypothetical protein, at 982,184 to 982,327
_00904
PFR28_00905: PFR28_00905 - DNA gyrase subunit A, at 982,551 to 985,214
_00905
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 980.068 kb on + strand, within PFR28_00902 at 980.068 kb on + strand, within PFR28_00902 at 980.068 kb on + strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.069 kb on - strand, within PFR28_00902 at 980.111 kb on + strand, within PFR28_00902 at 980.111 kb on + strand, within PFR28_00902 at 980.117 kb on + strand, within PFR28_00902 at 980.221 kb on + strand, within PFR28_00902 at 980.221 kb on + strand, within PFR28_00902 at 980.221 kb on + strand, within PFR28_00902 at 980.222 kb on - strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.266 kb on + strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.267 kb on - strand, within PFR28_00902 at 980.327 kb on + strand, within PFR28_00902 at 980.334 kb on + strand, within PFR28_00902 at 980.334 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.526 kb on + strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.527 kb on - strand, within PFR28_00902 at 980.846 kb on + strand at 980.846 kb on + strand at 980.846 kb on + strand at 980.846 kb on + strand at 980.847 kb on - strand at 980.891 kb on + strand at 980.891 kb on + strand at 980.891 kb on + strand at 980.892 kb on - strand at 980.892 kb on - strand at 980.892 kb on - strand at 980.892 kb on - strand at 980.892 kb on - strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.894 kb on + strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.895 kb on - strand at 980.944 kb on + strand at 980.944 kb on + strand at 980.945 kb on - strand at 980.946 kb on + strand at 980.946 kb on + strand at 980.946 kb on + strand at 980.946 kb on + strand at 980.946 kb on + strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.947 kb on - strand at 980.961 kb on + strand at 980.961 kb on + strand at 980.961 kb on + strand at 980.961 kb on + strand at 980.961 kb on + strand at 980.961 kb on + strand at 980.962 kb on - strand at 980.962 kb on - strand at 980.962 kb on - strand at 980.962 kb on - strand at 980.962 kb on - strand at 980.962 kb on - strand at 980.963 kb on + strand at 980.964 kb on - strand at 980.991 kb on + strand at 980.991 kb on + strand at 980.992 kb on - strand at 980.992 kb on - strand at 980.992 kb on - strand at 980.993 kb on + strand at 980.993 kb on + strand at 980.993 kb on + strand at 980.993 kb on + strand at 980.994 kb on - strand at 980.994 kb on - strand at 980.994 kb on - strand at 981.087 kb on + strand at 981.087 kb on + strand at 981.087 kb on + strand at 981.088 kb on - strand at 981.093 kb on + strand at 981.093 kb on + strand at 981.093 kb on + strand at 981.093 kb on + strand at 981.093 kb on + strand at 981.094 kb on - strand at 981.094 kb on - strand at 981.094 kb on - strand at 981.094 kb on - strand at 981.094 kb on - strand at 981.141 kb on + strand, within PFR28_00903 at 981.188 kb on - strand, within PFR28_00903 at 981.222 kb on + strand, within PFR28_00903 at 981.222 kb on + strand, within PFR28_00903 at 981.222 kb on + strand, within PFR28_00903 at 981.233 kb on - strand, within PFR28_00903 at 981.615 kb on + strand, within PFR28_00903 at 981.616 kb on - strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.810 kb on + strand, within PFR28_00903 at 981.811 kb on - strand, within PFR28_00903 at 981.811 kb on - strand, within PFR28_00903 at 982.116 kb on + strand at 982.116 kb on + strand at 982.285 kb on + strand, within PFR28_00904 at 982.285 kb on + strand, within PFR28_00904 at 982.285 kb on + strand, within PFR28_00904 at 982.285 kb on + strand, within PFR28_00904 at 982.285 kb on + strand, within PFR28_00904 at 982.285 kb on + strand, within PFR28_00904 at 982.286 kb on - strand, within PFR28_00904 at 982.286 kb on - strand, within PFR28_00904 at 982.286 kb on - strand, within PFR28_00904 at 982.286 kb on - strand, within PFR28_00904 at 982.325 kb on + strand at 982.325 kb on + strand at 982.325 kb on + strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.326 kb on - strand at 982.329 kb on + strand at 982.329 kb on + strand at 982.329 kb on + strand at 982.329 kb on + strand at 982.329 kb on + strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.330 kb on - strand at 982.353 kb on + strand at 982.354 kb on - strand at 982.354 kb on - strand at 982.418 kb on + strand at 982.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 980,068 + PFR28_00902 0.36 -0.0 980,068 + PFR28_00902 0.36 -0.3 980,068 + PFR28_00902 0.36 +0.6 980,069 - PFR28_00902 0.36 -0.1 980,069 - PFR28_00902 0.36 -2.6 980,069 - PFR28_00902 0.36 -0.3 980,069 - PFR28_00902 0.36 -0.1 980,069 - PFR28_00902 0.36 -1.1 980,069 - PFR28_00902 0.36 -0.8 980,069 - PFR28_00902 0.36 +0.5 980,069 - PFR28_00902 0.36 +0.4 980,111 + PFR28_00902 0.39 +1.0 980,111 + PFR28_00902 0.39 +0.5 980,117 + PFR28_00902 0.39 +0.8 980,221 + PFR28_00902 0.47 -0.4 980,221 + PFR28_00902 0.47 +0.3 980,221 + PFR28_00902 0.47 -1.2 980,222 - PFR28_00902 0.47 -0.9 980,266 + PFR28_00902 0.51 -0.0 980,266 + PFR28_00902 0.51 -0.3 980,266 + PFR28_00902 0.51 +0.8 980,266 + PFR28_00902 0.51 -0.5 980,266 + PFR28_00902 0.51 +0.4 980,266 + PFR28_00902 0.51 +0.0 980,266 + PFR28_00902 0.51 -0.7 980,266 + PFR28_00902 0.51 -0.4 980,267 - PFR28_00902 0.51 +0.0 980,267 - PFR28_00902 0.51 +0.4 980,267 - PFR28_00902 0.51 +0.1 980,267 - PFR28_00902 0.51 +0.4 980,267 - PFR28_00902 0.51 -0.2 980,267 - PFR28_00902 0.51 -0.8 980,267 - PFR28_00902 0.51 -0.9 980,267 - PFR28_00902 0.51 -1.1 980,327 + PFR28_00902 0.55 +1.7 980,334 + PFR28_00902 0.56 +0.5 980,334 + PFR28_00902 0.56 -0.4 980,526 + PFR28_00902 0.70 +2.1 980,526 + PFR28_00902 0.70 -2.2 980,526 + PFR28_00902 0.70 -2.2 980,526 + PFR28_00902 0.70 +1.1 980,526 + PFR28_00902 0.70 +0.6 980,526 + PFR28_00902 0.70 -0.9 980,526 + PFR28_00902 0.70 +2.4 980,526 + PFR28_00902 0.70 -1.9 980,526 + PFR28_00902 0.70 +0.1 980,526 + PFR28_00902 0.70 +3.0 980,526 + PFR28_00902 0.70 +1.0 980,527 - PFR28_00902 0.70 +0.2 980,527 - PFR28_00902 0.70 +1.2 980,527 - PFR28_00902 0.70 +1.4 980,527 - PFR28_00902 0.70 +0.0 980,527 - PFR28_00902 0.70 -0.6 980,527 - PFR28_00902 0.70 -0.9 980,527 - PFR28_00902 0.70 +0.4 980,527 - PFR28_00902 0.70 +0.4 980,527 - PFR28_00902 0.70 +0.6 980,527 - PFR28_00902 0.70 -0.2 980,527 - PFR28_00902 0.70 -0.6 980,527 - PFR28_00902 0.70 +0.0 980,527 - PFR28_00902 0.70 -0.7 980,527 - PFR28_00902 0.70 -0.7 980,527 - PFR28_00902 0.70 -0.2 980,527 - PFR28_00902 0.70 +0.5 980,527 - PFR28_00902 0.70 -0.3 980,527 - PFR28_00902 0.70 +0.4 980,527 - PFR28_00902 0.70 -0.1 980,527 - PFR28_00902 0.70 -0.1 980,527 - PFR28_00902 0.70 +1.1 980,527 - PFR28_00902 0.70 -0.9 980,527 - PFR28_00902 0.70 -0.9 980,527 - PFR28_00902 0.70 -1.1 980,527 - PFR28_00902 0.70 +0.8 980,846 + -1.7 980,846 + -0.6 980,846 + -0.4 980,846 + -0.3 980,847 - -1.3 980,891 + +0.3 980,891 + -0.6 980,891 + -0.3 980,892 - +0.6 980,892 - +0.0 980,892 - -0.4 980,892 - -0.2 980,892 - +0.8 980,894 + -0.9 980,894 + +0.1 980,894 + +0.2 980,894 + +0.7 980,894 + +0.9 980,894 + -2.5 980,894 + -0.4 980,894 + -0.1 980,894 + +0.6 980,895 - -0.2 980,895 - +0.7 980,895 - -2.3 980,895 - -0.8 980,895 - +0.0 980,895 - -0.2 980,895 - +0.1 980,895 - +0.7 980,895 - -0.3 980,944 + -1.3 980,944 + -1.4 980,945 - -0.3 980,946 + +2.8 980,946 + -0.5 980,946 + +0.2 980,946 + +1.4 980,946 + -0.8 980,947 - +0.7 980,947 - -1.1 980,947 - +0.1 980,947 - -0.2 980,947 - -0.4 980,947 - -2.5 980,947 - -1.8 980,961 + +0.2 980,961 + +1.6 980,961 + -0.4 980,961 + +0.4 980,961 + +1.3 980,961 + -1.8 980,962 - +1.5 980,962 - +1.2 980,962 - -0.7 980,962 - -0.2 980,962 - -0.2 980,962 - +0.2 980,963 + +1.0 980,964 - +1.2 980,991 + -0.1 980,991 + -0.2 980,992 - -0.5 980,992 - -0.6 980,992 - -0.9 980,993 + +0.4 980,993 + +1.0 980,993 + +0.2 980,993 + +1.4 980,994 - +0.1 980,994 - -0.5 980,994 - +0.7 981,087 + -0.0 981,087 + -0.5 981,087 + -0.4 981,088 - +0.4 981,093 + -1.0 981,093 + +0.5 981,093 + -0.1 981,093 + -0.0 981,093 + -1.1 981,094 - +0.0 981,094 - +0.3 981,094 - +0.4 981,094 - +1.2 981,094 - -0.5 981,141 + PFR28_00903 0.10 -3.0 981,188 - PFR28_00903 0.15 -0.7 981,222 + PFR28_00903 0.18 +0.6 981,222 + PFR28_00903 0.18 -1.3 981,222 + PFR28_00903 0.18 +0.4 981,233 - PFR28_00903 0.19 -0.6 981,615 + PFR28_00903 0.54 -0.5 981,616 - PFR28_00903 0.54 -0.5 981,810 + PFR28_00903 0.72 -1.2 981,810 + PFR28_00903 0.72 -1.0 981,810 + PFR28_00903 0.72 -1.0 981,810 + PFR28_00903 0.72 -0.3 981,810 + PFR28_00903 0.72 -0.1 981,810 + PFR28_00903 0.72 -1.5 981,811 - PFR28_00903 0.73 -0.4 981,811 - PFR28_00903 0.73 -1.5 982,116 + +0.4 982,116 + -1.5 982,285 + PFR28_00904 0.70 +0.3 982,285 + PFR28_00904 0.70 -0.6 982,285 + PFR28_00904 0.70 -1.6 982,285 + PFR28_00904 0.70 -1.4 982,285 + PFR28_00904 0.70 -0.2 982,285 + PFR28_00904 0.70 -0.8 982,286 - PFR28_00904 0.71 -1.1 982,286 - PFR28_00904 0.71 -0.9 982,286 - PFR28_00904 0.71 -0.4 982,286 - PFR28_00904 0.71 +0.3 982,325 + +0.7 982,325 + -0.1 982,325 + -0.1 982,326 - +0.9 982,326 - -1.8 982,326 - -0.3 982,326 - +0.3 982,326 - -0.6 982,326 - +0.4 982,326 - +0.4 982,329 + +0.8 982,329 + +0.1 982,329 + -1.3 982,329 + -0.5 982,329 + -0.6 982,330 - -1.1 982,330 - -1.9 982,330 - -0.3 982,330 - -2.4 982,330 - +0.7 982,330 - +0.7 982,330 - -1.4 982,353 + -0.6 982,354 - -0.8 982,354 - -0.6 982,418 + -0.3 982,438 + -1.0
Or see this region's nucleotide sequence