Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00826 and PFR28_00827 are separated by 11 nucleotides PFR28_00827 and PFR28_00828 are separated by 172 nucleotides PFR28_00828 and PFR28_00829 are separated by 110 nucleotides
PFR28_00826: PFR28_00826 - Flagellar secretion chaperone FliS, at 899,587 to 899,982
_00826
PFR28_00827: PFR28_00827 - hypothetical protein, at 899,994 to 900,290
_00827
PFR28_00828: PFR28_00828 - Anaerobic nitric oxide reductase transcription regulator NorR, at 900,463 to 901,938
_00828
PFR28_00829: PFR28_00829 - Signal transduction histidine-protein kinase AtoS, at 902,049 to 903,263
_00829
Position (kb) 900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 899.492 kb on + strand at 899.493 kb on - strand at 899.554 kb on + strand at 899.554 kb on + strand at 899.555 kb on - strand at 899.556 kb on + strand at 899.556 kb on + strand at 899.556 kb on + strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.557 kb on - strand at 899.572 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.581 kb on + strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.582 kb on - strand at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.669 kb on + strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.670 kb on - strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.854 kb on + strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.855 kb on - strand, within PFR28_00826 at 899.981 kb on - strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.987 kb on + strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 899.988 kb on - strand at 900.059 kb on + strand, within PFR28_00827 at 900.059 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.155 kb on + strand, within PFR28_00827 at 900.156 kb on - strand, within PFR28_00827 at 900.180 kb on + strand, within PFR28_00827 at 900.180 kb on + strand, within PFR28_00827 at 900.181 kb on - strand, within PFR28_00827 at 900.181 kb on - strand, within PFR28_00827 at 900.273 kb on + strand at 900.273 kb on + strand at 900.302 kb on + strand at 900.302 kb on + strand at 900.302 kb on + strand at 900.303 kb on - strand at 900.303 kb on - strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.352 kb on + strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.353 kb on - strand at 900.356 kb on + strand at 900.357 kb on - strand at 900.357 kb on - strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.384 kb on + strand at 900.411 kb on + strand at 900.411 kb on + strand at 900.445 kb on + strand at 900.457 kb on + strand at 900.457 kb on + strand at 900.457 kb on + strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.458 kb on - strand at 900.501 kb on + strand at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.641 kb on + strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.642 kb on - strand, within PFR28_00828 at 900.793 kb on + strand, within PFR28_00828 at 900.793 kb on + strand, within PFR28_00828 at 900.832 kb on + strand, within PFR28_00828 at 900.833 kb on - strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.844 kb on + strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.845 kb on - strand, within PFR28_00828 at 900.906 kb on + strand, within PFR28_00828 at 900.971 kb on + strand, within PFR28_00828 at 900.971 kb on + strand, within PFR28_00828 at 900.972 kb on - strand, within PFR28_00828 at 901.027 kb on + strand, within PFR28_00828 at 901.027 kb on + strand, within PFR28_00828 at 901.027 kb on + strand, within PFR28_00828 at 901.027 kb on + strand, within PFR28_00828 at 901.027 kb on + strand, within PFR28_00828 at 901.028 kb on - strand, within PFR28_00828 at 901.028 kb on - strand, within PFR28_00828 at 901.028 kb on - strand, within PFR28_00828 at 901.257 kb on + strand, within PFR28_00828 at 901.257 kb on + strand, within PFR28_00828 at 901.257 kb on + strand, within PFR28_00828 at 901.258 kb on - strand, within PFR28_00828 at 901.258 kb on - strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.301 kb on + strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.302 kb on - strand, within PFR28_00828 at 901.372 kb on + strand, within PFR28_00828 at 901.372 kb on + strand, within PFR28_00828 at 901.373 kb on - strand, within PFR28_00828 at 901.373 kb on - strand, within PFR28_00828 at 901.373 kb on - strand, within PFR28_00828 at 901.373 kb on - strand, within PFR28_00828 at 901.376 kb on - strand, within PFR28_00828 at 901.376 kb on - strand, within PFR28_00828 at 901.594 kb on + strand, within PFR28_00828 at 901.594 kb on + strand, within PFR28_00828 at 901.594 kb on + strand, within PFR28_00828 at 901.595 kb on - strand, within PFR28_00828 at 901.595 kb on - strand, within PFR28_00828 at 901.636 kb on + strand, within PFR28_00828 at 901.636 kb on + strand, within PFR28_00828 at 901.771 kb on + strand, within PFR28_00828 at 901.772 kb on - strand, within PFR28_00828 at 901.895 kb on - strand at 901.895 kb on - strand at 901.895 kb on - strand at 901.895 kb on - strand at 902.187 kb on + strand, within PFR28_00829 at 902.188 kb on - strand, within PFR28_00829 at 902.646 kb on - strand, within PFR28_00829 at 902.646 kb on - strand, within PFR28_00829 at 902.670 kb on + strand, within PFR28_00829 at 902.670 kb on + strand, within PFR28_00829 at 902.670 kb on + strand, within PFR28_00829 at 902.670 kb on + strand, within PFR28_00829 at 902.670 kb on + strand, within PFR28_00829 at 902.671 kb on - strand, within PFR28_00829 at 902.671 kb on - strand, within PFR28_00829 at 902.671 kb on - strand, within PFR28_00829 at 902.671 kb on - strand, within PFR28_00829 at 902.819 kb on - strand, within PFR28_00829 at 902.924 kb on + strand, within PFR28_00829 at 902.925 kb on - strand, within PFR28_00829
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 899,492 + +0.4 899,493 - -0.1 899,554 + +0.8 899,554 + -1.5 899,555 - +0.3 899,556 + -0.5 899,556 + +0.8 899,556 + -1.0 899,557 - +0.1 899,557 - +0.1 899,557 - -0.1 899,557 - -0.7 899,572 + -1.0 899,581 + -0.5 899,581 + -0.3 899,581 + +0.1 899,581 + +0.4 899,582 - +0.0 899,582 - +0.8 899,582 - -0.0 899,582 - +0.1 899,669 + PFR28_00826 0.21 -0.5 899,669 + PFR28_00826 0.21 +0.4 899,669 + PFR28_00826 0.21 +0.1 899,669 + PFR28_00826 0.21 +0.4 899,669 + PFR28_00826 0.21 -1.6 899,670 - PFR28_00826 0.21 +0.2 899,670 - PFR28_00826 0.21 +0.1 899,670 - PFR28_00826 0.21 +0.1 899,670 - PFR28_00826 0.21 -0.1 899,670 - PFR28_00826 0.21 +0.4 899,854 + PFR28_00826 0.67 -0.4 899,854 + PFR28_00826 0.67 -0.5 899,854 + PFR28_00826 0.67 -1.9 899,854 + PFR28_00826 0.67 -1.1 899,854 + PFR28_00826 0.67 +0.4 899,854 + PFR28_00826 0.67 +1.2 899,854 + PFR28_00826 0.67 +0.3 899,854 + PFR28_00826 0.67 -0.6 899,854 + PFR28_00826 0.67 -2.3 899,854 + PFR28_00826 0.67 +0.6 899,854 + PFR28_00826 0.67 +1.4 899,854 + PFR28_00826 0.67 -0.7 899,854 + PFR28_00826 0.67 -1.6 899,855 - PFR28_00826 0.68 -0.0 899,855 - PFR28_00826 0.68 -0.5 899,855 - PFR28_00826 0.68 +1.0 899,855 - PFR28_00826 0.68 +0.3 899,855 - PFR28_00826 0.68 -0.4 899,855 - PFR28_00826 0.68 -0.6 899,855 - PFR28_00826 0.68 +1.0 899,855 - PFR28_00826 0.68 -0.8 899,855 - PFR28_00826 0.68 +3.4 899,855 - PFR28_00826 0.68 -0.7 899,855 - PFR28_00826 0.68 -2.1 899,855 - PFR28_00826 0.68 -0.5 899,855 - PFR28_00826 0.68 -0.0 899,855 - PFR28_00826 0.68 +0.7 899,855 - PFR28_00826 0.68 +0.3 899,981 - -0.8 899,987 + +0.0 899,987 + -1.4 899,987 + -0.2 899,987 + +0.4 899,987 + +0.2 899,988 - -0.4 899,988 - -1.4 899,988 - -0.3 899,988 - -0.5 899,988 - -0.2 899,988 - +0.1 899,988 - -0.6 900,059 + PFR28_00827 0.22 +0.0 900,059 + PFR28_00827 0.22 -0.2 900,155 + PFR28_00827 0.54 -0.0 900,155 + PFR28_00827 0.54 +0.2 900,155 + PFR28_00827 0.54 +0.2 900,155 + PFR28_00827 0.54 +0.4 900,155 + PFR28_00827 0.54 -0.8 900,155 + PFR28_00827 0.54 +0.4 900,156 - PFR28_00827 0.55 +1.4 900,180 + PFR28_00827 0.63 -1.4 900,180 + PFR28_00827 0.63 -0.7 900,181 - PFR28_00827 0.63 -0.4 900,181 - PFR28_00827 0.63 -0.4 900,273 + -0.2 900,273 + -1.8 900,302 + +1.2 900,302 + -0.5 900,302 + +0.6 900,303 - +0.8 900,303 - -0.1 900,352 + -0.2 900,352 + +0.4 900,352 + +1.4 900,352 + -0.4 900,352 + +0.1 900,352 + -0.0 900,352 + -0.3 900,352 + +1.2 900,352 + +0.7 900,352 + +0.2 900,353 - +0.6 900,353 - +0.9 900,353 - +1.0 900,353 - +0.4 900,356 + -0.9 900,357 - +0.9 900,357 - +0.1 900,384 + +0.3 900,384 + -1.2 900,384 + +0.0 900,384 + +0.1 900,411 + +0.2 900,411 + +1.6 900,445 + +0.0 900,457 + +0.3 900,457 + +1.3 900,457 + +0.8 900,458 - +0.5 900,458 - +0.6 900,458 - +1.0 900,458 - +0.3 900,501 + +1.1 900,641 + PFR28_00828 0.12 +0.0 900,641 + PFR28_00828 0.12 +1.2 900,641 + PFR28_00828 0.12 +1.2 900,641 + PFR28_00828 0.12 +0.8 900,641 + PFR28_00828 0.12 +1.2 900,641 + PFR28_00828 0.12 +1.1 900,642 - PFR28_00828 0.12 -1.6 900,642 - PFR28_00828 0.12 -1.2 900,642 - PFR28_00828 0.12 +0.9 900,642 - PFR28_00828 0.12 +0.1 900,793 + PFR28_00828 0.22 +0.2 900,793 + PFR28_00828 0.22 +0.4 900,832 + PFR28_00828 0.25 +1.9 900,833 - PFR28_00828 0.25 -1.8 900,844 + PFR28_00828 0.26 +0.0 900,844 + PFR28_00828 0.26 +1.2 900,844 + PFR28_00828 0.26 +0.9 900,844 + PFR28_00828 0.26 +0.6 900,844 + PFR28_00828 0.26 +1.0 900,844 + PFR28_00828 0.26 +0.7 900,844 + PFR28_00828 0.26 +0.9 900,844 + PFR28_00828 0.26 +1.5 900,844 + PFR28_00828 0.26 +1.1 900,844 + PFR28_00828 0.26 -1.1 900,844 + PFR28_00828 0.26 +1.7 900,844 + PFR28_00828 0.26 +0.9 900,844 + PFR28_00828 0.26 +0.9 900,844 + PFR28_00828 0.26 +1.2 900,844 + PFR28_00828 0.26 +0.2 900,844 + PFR28_00828 0.26 -0.2 900,844 + PFR28_00828 0.26 +0.8 900,845 - PFR28_00828 0.26 +2.3 900,845 - PFR28_00828 0.26 +0.8 900,845 - PFR28_00828 0.26 +1.7 900,845 - PFR28_00828 0.26 +0.8 900,845 - PFR28_00828 0.26 +1.3 900,845 - PFR28_00828 0.26 -0.8 900,845 - PFR28_00828 0.26 +1.3 900,845 - PFR28_00828 0.26 +0.4 900,845 - PFR28_00828 0.26 +0.4 900,845 - PFR28_00828 0.26 +0.9 900,845 - PFR28_00828 0.26 -0.5 900,845 - PFR28_00828 0.26 +1.6 900,845 - PFR28_00828 0.26 +0.8 900,845 - PFR28_00828 0.26 +1.2 900,845 - PFR28_00828 0.26 -0.7 900,845 - PFR28_00828 0.26 +3.1 900,906 + PFR28_00828 0.30 +1.6 900,971 + PFR28_00828 0.34 +1.2 900,971 + PFR28_00828 0.34 +0.7 900,972 - PFR28_00828 0.34 +0.7 901,027 + PFR28_00828 0.38 +0.7 901,027 + PFR28_00828 0.38 +0.8 901,027 + PFR28_00828 0.38 +1.7 901,027 + PFR28_00828 0.38 +1.1 901,027 + PFR28_00828 0.38 +0.9 901,028 - PFR28_00828 0.38 +0.8 901,028 - PFR28_00828 0.38 +1.7 901,028 - PFR28_00828 0.38 +0.9 901,257 + PFR28_00828 0.54 +0.9 901,257 + PFR28_00828 0.54 +1.3 901,257 + PFR28_00828 0.54 +0.4 901,258 - PFR28_00828 0.54 +1.9 901,258 - PFR28_00828 0.54 +0.3 901,301 + PFR28_00828 0.57 +0.8 901,301 + PFR28_00828 0.57 +0.0 901,301 + PFR28_00828 0.57 +1.4 901,301 + PFR28_00828 0.57 +1.2 901,301 + PFR28_00828 0.57 +1.3 901,301 + PFR28_00828 0.57 +1.1 901,301 + PFR28_00828 0.57 +1.2 901,301 + PFR28_00828 0.57 +0.5 901,301 + PFR28_00828 0.57 +0.9 901,301 + PFR28_00828 0.57 +0.9 901,301 + PFR28_00828 0.57 +1.6 901,301 + PFR28_00828 0.57 +0.5 901,301 + PFR28_00828 0.57 +1.2 901,301 + PFR28_00828 0.57 +1.2 901,301 + PFR28_00828 0.57 +1.6 901,301 + PFR28_00828 0.57 +1.1 901,301 + PFR28_00828 0.57 +1.1 901,301 + PFR28_00828 0.57 +0.6 901,302 - PFR28_00828 0.57 +1.9 901,302 - PFR28_00828 0.57 +0.8 901,302 - PFR28_00828 0.57 +1.2 901,302 - PFR28_00828 0.57 +1.1 901,302 - PFR28_00828 0.57 +1.2 901,302 - PFR28_00828 0.57 +0.6 901,302 - PFR28_00828 0.57 +1.9 901,302 - PFR28_00828 0.57 +0.4 901,302 - PFR28_00828 0.57 +1.3 901,302 - PFR28_00828 0.57 +1.6 901,302 - PFR28_00828 0.57 +0.9 901,302 - PFR28_00828 0.57 +1.8 901,302 - PFR28_00828 0.57 +1.1 901,302 - PFR28_00828 0.57 +1.8 901,302 - PFR28_00828 0.57 +0.7 901,372 + PFR28_00828 0.62 +0.6 901,372 + PFR28_00828 0.62 +0.7 901,373 - PFR28_00828 0.62 +1.5 901,373 - PFR28_00828 0.62 +0.9 901,373 - PFR28_00828 0.62 +1.0 901,373 - PFR28_00828 0.62 +1.1 901,376 - PFR28_00828 0.62 -0.5 901,376 - PFR28_00828 0.62 +2.1 901,594 + PFR28_00828 0.77 +0.2 901,594 + PFR28_00828 0.77 +0.1 901,594 + PFR28_00828 0.77 +1.7 901,595 - PFR28_00828 0.77 +0.8 901,595 - PFR28_00828 0.77 +0.9 901,636 + PFR28_00828 0.79 +1.1 901,636 + PFR28_00828 0.79 +0.7 901,771 + PFR28_00828 0.89 -0.7 901,772 - PFR28_00828 0.89 +0.4 901,895 - +0.4 901,895 - +0.7 901,895 - +1.5 901,895 - +1.6 902,187 + PFR28_00829 0.11 -0.3 902,188 - PFR28_00829 0.11 +0.3 902,646 - PFR28_00829 0.49 +0.6 902,646 - PFR28_00829 0.49 +2.0 902,670 + PFR28_00829 0.51 +0.5 902,670 + PFR28_00829 0.51 +1.5 902,670 + PFR28_00829 0.51 +0.2 902,670 + PFR28_00829 0.51 +0.5 902,670 + PFR28_00829 0.51 +0.2 902,671 - PFR28_00829 0.51 -0.3 902,671 - PFR28_00829 0.51 -0.9 902,671 - PFR28_00829 0.51 +0.4 902,671 - PFR28_00829 0.51 -0.8 902,819 - PFR28_00829 0.63 +0.5 902,924 + PFR28_00829 0.72 -0.9 902,925 - PFR28_00829 0.72 -0.2
Or see this region's nucleotide sequence