Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00686 and PFR28_00687 are separated by 150 nucleotides PFR28_00687 and PFR28_00688 overlap by 17 nucleotides PFR28_00688 and PFR28_00689 overlap by 32 nucleotides PFR28_00689 and PFR28_00690 are separated by 562 nucleotides
PFR28_00686: PFR28_00686 - tRNA-modifying protein YgfZ, at 729,358 to 730,299
_00686
PFR28_00687: PFR28_00687 - FAD assembly factor SdhE, at 730,450 to 730,704
_00687
PFR28_00688: PFR28_00688 - hypothetical protein, at 730,688 to 731,140
_00688
PFR28_00689: PFR28_00689 - L-aspartate oxidase, at 731,109 to 732,725
_00689
PFR28_00690: PFR28_00690 - RNA polymerase sigma-H factor, at 733,288 to 733,869
_00690
Position (kb) 731
732
733 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.337 kb on - strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.421 kb on - strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.433 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.703 kb on - strand at 730.703 kb on - strand at 730.703 kb on - strand at 730.752 kb on - strand, within PFR28_00688 at 730.752 kb on - strand, within PFR28_00688 at 730.752 kb on - strand, within PFR28_00688 at 731.119 kb on + strand at 731.119 kb on + strand at 731.120 kb on - strand at 731.139 kb on - strand at 731.182 kb on + strand at 731.182 kb on + strand at 731.182 kb on + strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.378 kb on - strand, within PFR28_00689 at 731.378 kb on - strand, within PFR28_00689 at 731.533 kb on + strand, within PFR28_00689 at 731.534 kb on - strand, within PFR28_00689 at 731.614 kb on + strand, within PFR28_00689 at 731.614 kb on + strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.671 kb on + strand, within PFR28_00689 at 731.671 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.741 kb on - strand, within PFR28_00689 at 731.797 kb on + strand, within PFR28_00689 at 731.797 kb on + strand, within PFR28_00689 at 731.798 kb on - strand, within PFR28_00689 at 731.798 kb on - strand, within PFR28_00689 at 731.981 kb on - strand, within PFR28_00689 at 731.981 kb on - strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.094 kb on + strand, within PFR28_00689 at 732.094 kb on + strand, within PFR28_00689 at 732.095 kb on - strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.147 kb on - strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.483 kb on + strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.712 kb on + strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.811 kb on - strand at 732.811 kb on - strand at 732.811 kb on - strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.839 kb on - strand at 732.943 kb on + strand at 732.943 kb on + strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.956 kb on - strand at 732.956 kb on - strand at 732.956 kb on - strand at 732.959 kb on + strand at 732.959 kb on + strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.999 kb on + strand at 733.000 kb on - strand at 733.116 kb on + strand at 733.117 kb on - strand at 733.226 kb on + strand at 733.248 kb on + strand at 733.249 kb on - strand at 733.249 kb on - strand at 733.293 kb on - strand at 733.293 kb on - strand at 733.361 kb on + strand, within PFR28_00690 at 733.361 kb on + strand, within PFR28_00690 at 733.362 kb on - strand, within PFR28_00690 at 733.372 kb on + strand, within PFR28_00690 at 733.373 kb on - strand, within PFR28_00690 at 733.477 kb on - strand, within PFR28_00690 at 733.543 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 730,336 + +0.3 730,336 + -0.2 730,336 + +0.9 730,336 + +0.8 730,336 + +0.7 730,337 - +0.3 730,359 + +0.0 730,359 + +0.6 730,359 + -0.4 730,359 + -1.1 730,359 + +0.0 730,360 - -0.0 730,360 - +1.1 730,360 - -0.7 730,360 - -0.2 730,360 - -1.4 730,360 - +0.5 730,420 + -1.4 730,420 + -0.0 730,420 + -0.3 730,420 + -0.3 730,420 + -0.3 730,420 + -0.1 730,421 - +1.1 730,422 + +0.2 730,422 + -0.9 730,422 + +0.7 730,422 + -0.2 730,422 + +0.1 730,422 + -0.1 730,422 + +0.6 730,422 + -0.2 730,433 + -0.4 730,702 + +0.6 730,702 + +1.0 730,702 + +1.2 730,702 + -0.8 730,702 + +0.5 730,702 + -1.2 730,703 - -0.6 730,703 - +0.5 730,703 - -0.3 730,752 - PFR28_00688 0.14 -1.9 730,752 - PFR28_00688 0.14 -0.7 730,752 - PFR28_00688 0.14 -1.5 731,119 + -0.2 731,119 + -0.2 731,120 - -0.3 731,139 - -0.0 731,182 + -0.7 731,182 + -0.6 731,182 + -0.3 731,183 - -1.1 731,183 - -0.2 731,183 - -0.7 731,183 - -0.4 731,183 - -1.5 731,183 - +0.9 731,183 - -1.8 731,284 + PFR28_00689 0.11 -1.7 731,284 + PFR28_00689 0.11 -0.5 731,284 + PFR28_00689 0.11 -0.9 731,284 + PFR28_00689 0.11 -0.3 731,284 + PFR28_00689 0.11 -1.4 731,284 + PFR28_00689 0.11 -0.1 731,285 - PFR28_00689 0.11 -1.5 731,285 - PFR28_00689 0.11 -1.8 731,285 - PFR28_00689 0.11 -2.3 731,285 - PFR28_00689 0.11 -0.4 731,285 - PFR28_00689 0.11 -0.6 731,285 - PFR28_00689 0.11 -1.3 731,285 - PFR28_00689 0.11 -1.4 731,285 - PFR28_00689 0.11 -1.4 731,288 + PFR28_00689 0.11 -0.9 731,288 + PFR28_00689 0.11 -0.9 731,288 + PFR28_00689 0.11 -2.1 731,289 - PFR28_00689 0.11 -0.5 731,289 - PFR28_00689 0.11 -1.6 731,289 - PFR28_00689 0.11 -0.8 731,289 - PFR28_00689 0.11 -1.0 731,289 - PFR28_00689 0.11 -0.2 731,289 - PFR28_00689 0.11 -0.5 731,294 - PFR28_00689 0.11 -0.4 731,294 - PFR28_00689 0.11 -1.2 731,294 - PFR28_00689 0.11 -0.8 731,294 - PFR28_00689 0.11 -0.8 731,378 - PFR28_00689 0.17 -1.1 731,378 - PFR28_00689 0.17 -0.3 731,533 + PFR28_00689 0.26 -1.5 731,534 - PFR28_00689 0.26 -1.4 731,614 + PFR28_00689 0.31 -1.0 731,614 + PFR28_00689 0.31 -0.7 731,615 - PFR28_00689 0.31 -1.2 731,615 - PFR28_00689 0.31 -0.6 731,615 - PFR28_00689 0.31 -0.5 731,671 + PFR28_00689 0.35 -0.0 731,671 + PFR28_00689 0.35 -1.1 731,740 + PFR28_00689 0.39 -1.7 731,740 + PFR28_00689 0.39 -1.7 731,740 + PFR28_00689 0.39 -0.4 731,741 - PFR28_00689 0.39 -1.1 731,797 + PFR28_00689 0.43 +0.0 731,797 + PFR28_00689 0.43 -0.6 731,798 - PFR28_00689 0.43 -0.4 731,798 - PFR28_00689 0.43 -1.3 731,981 - PFR28_00689 0.54 -0.4 731,981 - PFR28_00689 0.54 -0.8 732,086 + PFR28_00689 0.60 -0.0 732,086 + PFR28_00689 0.60 -1.9 732,086 + PFR28_00689 0.60 -2.3 732,086 + PFR28_00689 0.60 -1.6 732,086 + PFR28_00689 0.60 -0.8 732,086 + PFR28_00689 0.60 -0.2 732,087 - PFR28_00689 0.60 +0.8 732,087 - PFR28_00689 0.60 -2.8 732,087 - PFR28_00689 0.60 -0.7 732,087 - PFR28_00689 0.60 -0.8 732,087 - PFR28_00689 0.60 +0.0 732,088 + PFR28_00689 0.61 -1.0 732,088 + PFR28_00689 0.61 -2.1 732,088 + PFR28_00689 0.61 +0.1 732,088 + PFR28_00689 0.61 -1.3 732,088 + PFR28_00689 0.61 -2.3 732,089 - PFR28_00689 0.61 -2.5 732,089 - PFR28_00689 0.61 -0.5 732,089 - PFR28_00689 0.61 +1.3 732,089 - PFR28_00689 0.61 -0.2 732,094 + PFR28_00689 0.61 -0.5 732,094 + PFR28_00689 0.61 -0.8 732,095 - PFR28_00689 0.61 -1.5 732,142 + PFR28_00689 0.64 -0.4 732,142 + PFR28_00689 0.64 -1.2 732,142 + PFR28_00689 0.64 -0.0 732,142 + PFR28_00689 0.64 -0.7 732,142 + PFR28_00689 0.64 -1.3 732,142 + PFR28_00689 0.64 -0.7 732,143 - PFR28_00689 0.64 -3.0 732,143 - PFR28_00689 0.64 -0.4 732,143 - PFR28_00689 0.64 -0.3 732,147 - PFR28_00689 0.64 -0.6 732,178 + PFR28_00689 0.66 -1.0 732,178 + PFR28_00689 0.66 -1.3 732,178 + PFR28_00689 0.66 +0.1 732,178 + PFR28_00689 0.66 +0.4 732,178 + PFR28_00689 0.66 -1.3 732,178 + PFR28_00689 0.66 -0.8 732,178 + PFR28_00689 0.66 -0.9 732,178 + PFR28_00689 0.66 -0.4 732,178 + PFR28_00689 0.66 +0.4 732,178 + PFR28_00689 0.66 -0.4 732,179 - PFR28_00689 0.66 +0.2 732,179 - PFR28_00689 0.66 -0.5 732,179 - PFR28_00689 0.66 -0.7 732,179 - PFR28_00689 0.66 -0.9 732,179 - PFR28_00689 0.66 -0.7 732,179 - PFR28_00689 0.66 -0.5 732,179 - PFR28_00689 0.66 -1.9 732,179 - PFR28_00689 0.66 -0.0 732,179 - PFR28_00689 0.66 -0.6 732,179 - PFR28_00689 0.66 -1.9 732,179 - PFR28_00689 0.66 -0.4 732,179 - PFR28_00689 0.66 -0.5 732,179 - PFR28_00689 0.66 -2.0 732,179 - PFR28_00689 0.66 -0.0 732,179 - PFR28_00689 0.66 -2.3 732,483 + PFR28_00689 0.85 -1.0 732,484 - PFR28_00689 0.85 -1.1 732,484 - PFR28_00689 0.85 -2.7 732,484 - PFR28_00689 0.85 -3.0 732,712 + -1.3 732,713 - -0.8 732,713 - -1.4 732,713 - -0.5 732,713 - -0.8 732,713 - -2.6 732,713 - -0.1 732,713 - -0.3 732,810 + +0.3 732,810 + +0.1 732,810 + -0.3 732,810 + +0.7 732,811 - -0.2 732,811 - +0.3 732,811 - +1.5 732,813 + +1.0 732,813 + -0.3 732,813 + +0.2 732,813 + -0.9 732,813 + +1.0 732,813 + +0.4 732,813 + -1.9 732,813 + +0.2 732,813 + +0.2 732,813 + +0.0 732,813 + +4.6 732,813 + -0.7 732,813 + +0.2 732,813 + -0.8 732,813 + +1.8 732,813 + +0.9 732,813 + +0.6 732,813 + -0.4 732,813 + -0.4 732,813 + +0.1 732,813 + -1.3 732,813 + -1.1 732,813 + -0.4 732,813 + -0.6 732,813 + -2.6 732,813 + +0.6 732,814 - 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Or see this region's nucleotide sequence