Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00656 and PFR28_00657 are separated by 285 nucleotides PFR28_00657 and PFR28_00658 are separated by 57 nucleotides
PFR28_00656: PFR28_00656 - 2-amino-3-ketobutyrate coenzyme A ligase, at 699,782 to 701,017
_00656
PFR28_00657: PFR28_00657 - Glutathione transferase FosA, at 701,303 to 701,719
_00657
PFR28_00658: PFR28_00658 - hypothetical protein, at 701,777 to 703,210
_00658
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 700.362 kb on + strand, within PFR28_00656 at 700.392 kb on + strand, within PFR28_00656 at 700.392 kb on + strand, within PFR28_00656 at 700.393 kb on - strand, within PFR28_00656 at 700.393 kb on - strand, within PFR28_00656 at 700.393 kb on - strand, within PFR28_00656 at 700.393 kb on - strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.394 kb on + strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.395 kb on - strand, within PFR28_00656 at 700.432 kb on - strand, within PFR28_00656 at 700.449 kb on + strand, within PFR28_00656 at 700.449 kb on + strand, within PFR28_00656 at 700.449 kb on + strand, within PFR28_00656 at 700.449 kb on + strand, within PFR28_00656 at 700.450 kb on - strand, within PFR28_00656 at 700.450 kb on - strand, within PFR28_00656 at 700.450 kb on - strand, within PFR28_00656 at 700.450 kb on - strand, within PFR28_00656 at 700.583 kb on + strand, within PFR28_00656 at 700.583 kb on + strand, within PFR28_00656 at 700.583 kb on + strand, within PFR28_00656 at 700.584 kb on - strand, within PFR28_00656 at 700.818 kb on + strand, within PFR28_00656 at 700.833 kb on + strand, within PFR28_00656 at 700.833 kb on + strand, within PFR28_00656 at 700.869 kb on + strand, within PFR28_00656 at 700.869 kb on + strand, within PFR28_00656 at 700.869 kb on + strand, within PFR28_00656 at 700.869 kb on + strand, within PFR28_00656 at 700.870 kb on - strand, within PFR28_00656 at 700.977 kb on + strand at 700.977 kb on + strand at 700.977 kb on + strand at 700.978 kb on - strand at 701.026 kb on + strand at 701.026 kb on + strand at 701.027 kb on - strand at 701.027 kb on - strand at 701.159 kb on + strand at 701.159 kb on + strand at 701.160 kb on - strand at 701.214 kb on + strand at 701.214 kb on + strand at 701.214 kb on + strand at 701.214 kb on + strand at 701.215 kb on - strand at 701.215 kb on - strand at 701.215 kb on - strand at 701.215 kb on - strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.259 kb on + strand at 701.260 kb on - strand at 701.260 kb on - strand at 701.260 kb on - strand at 701.260 kb on - strand at 701.260 kb on - strand at 701.260 kb on - strand at 701.367 kb on - strand, within PFR28_00657 at 701.417 kb on + strand, within PFR28_00657 at 701.417 kb on + strand, within PFR28_00657 at 701.417 kb on + strand, within PFR28_00657 at 701.417 kb on + strand, within PFR28_00657 at 701.417 kb on + strand, within PFR28_00657 at 701.418 kb on - strand, within PFR28_00657 at 701.418 kb on - strand, within PFR28_00657 at 701.489 kb on + strand, within PFR28_00657 at 701.489 kb on + strand, within PFR28_00657 at 701.490 kb on - strand, within PFR28_00657 at 701.603 kb on + strand, within PFR28_00657 at 701.687 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.798 kb on + strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.799 kb on - strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.800 kb on + strand at 701.801 kb on - strand at 701.801 kb on - strand at 701.801 kb on - strand at 701.801 kb on - strand at 701.801 kb on - strand at 701.801 kb on - strand at 701.866 kb on + strand at 701.894 kb on + strand at 701.895 kb on - strand at 701.984 kb on + strand, within PFR28_00658 at 701.986 kb on + strand, within PFR28_00658 at 701.986 kb on + strand, within PFR28_00658 at 701.986 kb on + strand, within PFR28_00658 at 701.986 kb on + strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 701.987 kb on - strand, within PFR28_00658 at 702.027 kb on + strand, within PFR28_00658 at 702.028 kb on - strand, within PFR28_00658 at 702.028 kb on - strand, within PFR28_00658 at 702.028 kb on - strand, within PFR28_00658 at 702.028 kb on - strand, within PFR28_00658 at 702.028 kb on - strand, within PFR28_00658 at 702.242 kb on + strand, within PFR28_00658 at 702.242 kb on + strand, within PFR28_00658 at 702.242 kb on + strand, within PFR28_00658 at 702.243 kb on - strand, within PFR28_00658 at 702.243 kb on - strand, within PFR28_00658 at 702.243 kb on - strand, within PFR28_00658 at 702.243 kb on - strand, within PFR28_00658 at 702.243 kb on - strand, within PFR28_00658 at 702.353 kb on + strand, within PFR28_00658 at 702.629 kb on + strand, within PFR28_00658 at 702.629 kb on + strand, within PFR28_00658 at 702.630 kb on - strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.659 kb on + strand, within PFR28_00658 at 702.660 kb on - strand, within PFR28_00658 at 702.660 kb on - strand, within PFR28_00658 at 702.660 kb on - strand, within PFR28_00658
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 700,362 + PFR28_00656 0.47 +0.2 700,392 + PFR28_00656 0.49 +0.5 700,392 + PFR28_00656 0.49 -0.5 700,393 - PFR28_00656 0.49 -1.1 700,393 - PFR28_00656 0.49 +0.9 700,393 - PFR28_00656 0.49 -0.4 700,393 - PFR28_00656 0.49 -0.2 700,394 + PFR28_00656 0.50 +0.2 700,394 + PFR28_00656 0.50 -0.6 700,394 + PFR28_00656 0.50 +0.5 700,394 + PFR28_00656 0.50 -1.3 700,394 + PFR28_00656 0.50 +0.0 700,394 + PFR28_00656 0.50 +0.0 700,394 + PFR28_00656 0.50 +0.6 700,394 + PFR28_00656 0.50 +0.4 700,394 + PFR28_00656 0.50 -0.6 700,395 - PFR28_00656 0.50 +0.4 700,395 - PFR28_00656 0.50 +0.4 700,395 - PFR28_00656 0.50 +0.2 700,395 - PFR28_00656 0.50 +1.6 700,395 - PFR28_00656 0.50 +0.5 700,395 - PFR28_00656 0.50 -0.8 700,432 - PFR28_00656 0.53 -0.2 700,449 + PFR28_00656 0.54 -0.9 700,449 + PFR28_00656 0.54 -0.3 700,449 + PFR28_00656 0.54 -0.3 700,449 + PFR28_00656 0.54 -0.6 700,450 - PFR28_00656 0.54 -0.4 700,450 - PFR28_00656 0.54 -0.7 700,450 - PFR28_00656 0.54 -1.4 700,450 - PFR28_00656 0.54 +0.8 700,583 + PFR28_00656 0.65 -0.1 700,583 + PFR28_00656 0.65 +0.5 700,583 + PFR28_00656 0.65 -0.7 700,584 - PFR28_00656 0.65 -3.2 700,818 + PFR28_00656 0.84 +0.7 700,833 + PFR28_00656 0.85 +0.0 700,833 + PFR28_00656 0.85 +0.4 700,869 + PFR28_00656 0.88 -0.2 700,869 + PFR28_00656 0.88 -0.7 700,869 + PFR28_00656 0.88 +0.4 700,869 + PFR28_00656 0.88 -0.1 700,870 - PFR28_00656 0.88 +0.3 700,977 + +0.6 700,977 + +0.2 700,977 + -0.3 700,978 - +0.8 701,026 + -0.8 701,026 + +1.3 701,027 - -0.6 701,027 - +2.0 701,159 + +1.1 701,159 + -0.2 701,160 - +0.2 701,214 + +0.5 701,214 + -0.4 701,214 + +0.4 701,214 + -1.5 701,215 - +1.7 701,215 - +1.8 701,215 - +1.2 701,215 - +0.3 701,259 + -0.2 701,259 + +0.8 701,259 + +0.3 701,259 + +0.0 701,259 + -1.0 701,259 + +0.8 701,259 + -1.2 701,259 + +0.6 701,259 + -1.7 701,260 - +0.0 701,260 - -1.0 701,260 - -0.5 701,260 - +0.8 701,260 - -0.2 701,260 - +0.8 701,367 - PFR28_00657 0.15 +1.4 701,417 + PFR28_00657 0.27 -1.2 701,417 + PFR28_00657 0.27 +1.3 701,417 + PFR28_00657 0.27 -0.5 701,417 + PFR28_00657 0.27 +0.1 701,417 + PFR28_00657 0.27 +1.0 701,418 - PFR28_00657 0.28 +0.6 701,418 - PFR28_00657 0.28 +0.6 701,489 + PFR28_00657 0.45 +0.4 701,489 + PFR28_00657 0.45 +0.1 701,490 - PFR28_00657 0.45 +0.2 701,603 + PFR28_00657 0.72 +1.4 701,687 + -0.5 701,798 + +0.5 701,798 + -0.0 701,798 + +0.7 701,798 + -0.6 701,798 + +0.1 701,798 + +1.8 701,798 + -0.3 701,798 + +0.4 701,798 + -0.6 701,798 + -0.3 701,798 + +0.5 701,798 + +0.7 701,798 + -0.8 701,799 - +0.1 701,799 - -0.5 701,799 - -1.4 701,799 - -0.3 701,799 - +0.0 701,799 - +1.3 701,799 - -0.4 701,799 - -0.5 701,799 - +0.8 701,799 - +0.2 701,799 - +0.5 701,799 - -0.1 701,799 - -1.7 701,799 - +0.3 701,799 - -0.2 701,799 - +0.7 701,799 - -1.5 701,799 - +0.5 701,799 - -0.6 701,799 - -1.9 701,799 - +0.2 701,799 - +0.7 701,799 - +0.2 701,799 - -0.3 701,799 - +0.6 701,799 - +0.0 701,799 - -0.7 701,799 - -0.1 701,799 - -0.2 701,800 + -0.0 701,800 + -0.0 701,800 + +0.6 701,800 + +0.7 701,800 + +0.2 701,800 + +0.2 701,800 + -0.4 701,800 + +0.1 701,800 + +0.5 701,801 - -0.1 701,801 - -1.3 701,801 - +2.6 701,801 - -0.0 701,801 - +0.6 701,801 - -1.4 701,866 + -0.0 701,894 + -0.1 701,895 - -0.4 701,984 + PFR28_00658 0.14 -0.6 701,986 + PFR28_00658 0.15 +0.4 701,986 + PFR28_00658 0.15 +0.5 701,986 + PFR28_00658 0.15 -0.6 701,986 + PFR28_00658 0.15 -0.5 701,987 - PFR28_00658 0.15 +0.8 701,987 - PFR28_00658 0.15 +0.4 701,987 - PFR28_00658 0.15 +0.3 701,987 - PFR28_00658 0.15 +0.7 701,987 - PFR28_00658 0.15 +0.2 701,987 - PFR28_00658 0.15 +0.9 701,987 - PFR28_00658 0.15 +0.4 701,987 - PFR28_00658 0.15 -0.3 701,987 - PFR28_00658 0.15 -0.1 701,987 - PFR28_00658 0.15 +0.1 701,987 - PFR28_00658 0.15 +1.4 701,987 - PFR28_00658 0.15 +0.6 702,027 + PFR28_00658 0.17 +0.4 702,028 - PFR28_00658 0.18 +0.8 702,028 - PFR28_00658 0.18 +0.2 702,028 - PFR28_00658 0.18 -0.6 702,028 - PFR28_00658 0.18 -0.8 702,028 - PFR28_00658 0.18 +2.0 702,242 + PFR28_00658 0.32 +1.2 702,242 + PFR28_00658 0.32 +0.6 702,242 + PFR28_00658 0.32 +0.5 702,243 - PFR28_00658 0.32 +0.6 702,243 - PFR28_00658 0.32 -1.3 702,243 - PFR28_00658 0.32 +0.3 702,243 - PFR28_00658 0.32 -0.0 702,243 - PFR28_00658 0.32 +0.1 702,353 + PFR28_00658 0.40 -0.1 702,629 + PFR28_00658 0.59 -0.6 702,629 + PFR28_00658 0.59 +0.5 702,630 - PFR28_00658 0.59 -2.0 702,659 + PFR28_00658 0.62 -0.9 702,659 + PFR28_00658 0.62 +0.6 702,659 + PFR28_00658 0.62 -0.2 702,659 + PFR28_00658 0.62 +1.0 702,659 + PFR28_00658 0.62 +0.2 702,659 + PFR28_00658 0.62 -0.0 702,659 + PFR28_00658 0.62 -0.0 702,659 + PFR28_00658 0.62 -0.7 702,660 - PFR28_00658 0.62 -0.8 702,660 - PFR28_00658 0.62 -0.0 702,660 - PFR28_00658 0.62 +0.2
Or see this region's nucleotide sequence