Strain Fitness in Pseudomonas sp. RS175 around PFR28_00633

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00632 and PFR28_00633 are separated by 260 nucleotidesPFR28_00633 and PFR28_00634 are separated by 205 nucleotides PFR28_00632: PFR28_00632 - putative efflux pump periplasmic linker TtgA, at 676,167 to 677,324 _00632 PFR28_00633: PFR28_00633 - HTH-type transcriptional regulator TtgR, at 677,585 to 678,217 _00633 PFR28_00634: PFR28_00634 - hypothetical protein, at 678,423 to 678,929 _00634 Position (kb) 677 678 679Strain fitness (log2 ratio) -2 -1 0 1 2at 676.612 kb on + strand, within PFR28_00632at 676.612 kb on + strand, within PFR28_00632at 676.613 kb on - strand, within PFR28_00632at 676.613 kb on - strand, within PFR28_00632at 676.738 kb on + strand, within PFR28_00632at 676.738 kb on + strand, within PFR28_00632at 676.738 kb on + strand, within PFR28_00632at 676.738 kb on + strand, within PFR28_00632at 676.738 kb on + strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.739 kb on - strand, within PFR28_00632at 676.846 kb on + strand, within PFR28_00632at 676.846 kb on + strand, within PFR28_00632at 676.847 kb on - strand, within PFR28_00632at 676.859 kb on - strand, within PFR28_00632at 676.927 kb on + strand, within PFR28_00632at 676.927 kb on + strand, within PFR28_00632at 676.927 kb on + strand, within PFR28_00632at 676.927 kb on + strand, within PFR28_00632at 676.928 kb on - strand, within PFR28_00632at 676.928 kb on - strand, within PFR28_00632at 676.928 kb on - strand, within PFR28_00632at 676.928 kb on - strand, within PFR28_00632at 676.970 kb on - strand, within PFR28_00632at 676.970 kb on - strand, within PFR28_00632at 677.032 kb on + strand, within PFR28_00632at 677.033 kb on - strand, within PFR28_00632at 677.033 kb on - strand, within PFR28_00632at 677.053 kb on + strand, within PFR28_00632at 677.054 kb on - strand, within PFR28_00632at 677.054 kb on - strand, within PFR28_00632at 677.054 kb on - strand, within PFR28_00632at 677.255 kb on + strandat 677.255 kb on + strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.256 kb on - strandat 677.395 kb on + strandat 677.398 kb on + strandat 677.398 kb on + strandat 677.398 kb on + strandat 677.398 kb on + strandat 677.398 kb on + strandat 677.399 kb on - strandat 677.399 kb on - strandat 677.419 kb on + strandat 677.419 kb on + strandat 677.420 kb on - strandat 677.420 kb on - strandat 677.423 kb on + strandat 677.423 kb on + strandat 677.423 kb on + strandat 677.424 kb on - strandat 677.424 kb on - strandat 677.424 kb on - strandat 677.424 kb on - strandat 677.424 kb on - strandat 677.424 kb on - strandat 677.454 kb on + strandat 677.455 kb on - strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.489 kb on + strandat 677.545 kb on + strandat 677.545 kb on + strandat 677.546 kb on - strandat 677.729 kb on + strand, within PFR28_00633at 677.729 kb on + strand, within PFR28_00633at 677.729 kb on + strand, within PFR28_00633at 677.729 kb on + strand, within PFR28_00633at 677.729 kb on + strand, within PFR28_00633at 677.730 kb on - strand, within PFR28_00633at 677.730 kb on - strand, within PFR28_00633at 677.730 kb on - strand, within PFR28_00633at 677.730 kb on - strand, within PFR28_00633at 677.777 kb on - strand, within PFR28_00633at 677.777 kb on - strand, within PFR28_00633at 677.929 kb on + strand, within PFR28_00633at 677.930 kb on - strand, within PFR28_00633at 677.930 kb on - strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.092 kb on + strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.093 kb on - strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.094 kb on + strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.095 kb on - strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.096 kb on + strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.097 kb on - strand, within PFR28_00633at 678.110 kb on + strand, within PFR28_00633at 678.229 kb on + strandat 678.251 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.370 kb on + strandat 678.371 kb on - strandat 678.371 kb on - strandat 678.371 kb on - strandat 678.371 kb on - strandat 678.419 kb on + strandat 678.420 kb on - strandat 678.420 kb on - strandat 678.420 kb on - strandat 678.425 kb on - strandat 678.449 kb on - strandat 678.449 kb on - strandat 678.497 kb on + strand, within PFR28_00634at 678.497 kb on + strand, within PFR28_00634at 678.498 kb on - strand, within PFR28_00634at 678.498 kb on - strand, within PFR28_00634at 678.498 kb on - strand, within PFR28_00634at 678.499 kb on + strand, within PFR28_00634at 678.518 kb on - strand, within PFR28_00634at 678.721 kb on + strand, within PFR28_00634at 678.830 kb on + strand, within PFR28_00634at 678.831 kb on - strand, within PFR28_00634at 678.831 kb on - strand, within PFR28_00634at 678.831 kb on - strand, within PFR28_00634at 678.858 kb on - strand, within PFR28_00634at 678.894 kb on + strandat 678.932 kb on + strandat 678.969 kb on + strandat 678.969 kb on + strandat 678.970 kb on - strandat 678.970 kb on - strandat 678.974 kb on - strandat 678.979 kb on + strandat 678.980 kb on - strandat 679.023 kb on - strandat 679.062 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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676,612 + PFR28_00632 0.38 +0.8
676,612 + PFR28_00632 0.38 -0.5
676,613 - PFR28_00632 0.39 -0.8
676,613 - PFR28_00632 0.39 +0.7
676,738 + PFR28_00632 0.49 +1.2
676,738 + PFR28_00632 0.49 +0.3
676,738 + PFR28_00632 0.49 -0.3
676,738 + PFR28_00632 0.49 -0.4
676,738 + PFR28_00632 0.49 -0.7
676,739 - PFR28_00632 0.49 +2.2
676,739 - PFR28_00632 0.49 +0.7
676,739 - PFR28_00632 0.49 +0.8
676,739 - PFR28_00632 0.49 -0.4
676,739 - PFR28_00632 0.49 +0.6
676,739 - PFR28_00632 0.49 +0.0
676,739 - PFR28_00632 0.49 -0.1
676,739 - PFR28_00632 0.49 +0.4
676,739 - PFR28_00632 0.49 -0.9
676,846 + PFR28_00632 0.59 -0.2
676,846 + PFR28_00632 0.59 +1.0
676,847 - PFR28_00632 0.59 -2.2
676,859 - PFR28_00632 0.60 +0.0
676,927 + PFR28_00632 0.66 +0.4
676,927 + PFR28_00632 0.66 +0.7
676,927 + PFR28_00632 0.66 +0.1
676,927 + PFR28_00632 0.66 +0.1
676,928 - PFR28_00632 0.66 +0.3
676,928 - PFR28_00632 0.66 -0.0
676,928 - PFR28_00632 0.66 +0.1
676,928 - PFR28_00632 0.66 -0.3
676,970 - PFR28_00632 0.69 +0.0
676,970 - PFR28_00632 0.69 +0.3
677,032 + PFR28_00632 0.75 -0.1
677,033 - PFR28_00632 0.75 +0.3
677,033 - PFR28_00632 0.75 -0.4
677,053 + PFR28_00632 0.77 +0.4
677,054 - PFR28_00632 0.77 +1.3
677,054 - PFR28_00632 0.77 +0.7
677,054 - PFR28_00632 0.77 +0.6
677,255 + +1.1
677,255 + +1.4
677,256 - +2.6
677,256 - +0.7
677,256 - +0.4
677,256 - +1.1
677,256 - +0.6
677,256 - -0.7
677,256 - -0.3
677,395 + -1.0
677,398 + +0.4
677,398 + +0.2
677,398 + +0.4
677,398 + +0.2
677,398 + +0.0
677,399 - -1.2
677,399 - -1.5
677,419 + -0.6
677,419 + +0.5
677,420 - +1.4
677,420 - -0.6
677,423 + +0.4
677,423 + -1.2
677,423 + +0.7
677,424 - -0.7
677,424 - -1.7
677,424 - -1.8
677,424 - -0.9
677,424 - -2.5
677,424 - -1.7
677,454 + +0.3
677,455 - -2.7
677,489 + -1.2
677,489 + -0.3
677,489 + +0.8
677,489 + +0.5
677,489 + -0.4
677,489 + +0.1
677,489 + -1.0
677,545 + +0.3
677,545 + -1.0
677,546 - +0.4
677,729 + PFR28_00633 0.23 -0.6
677,729 + PFR28_00633 0.23 -0.9
677,729 + PFR28_00633 0.23 -1.2
677,729 + PFR28_00633 0.23 -1.2
677,729 + PFR28_00633 0.23 -0.4
677,730 - PFR28_00633 0.23 -0.4
677,730 - PFR28_00633 0.23 -0.6
677,730 - PFR28_00633 0.23 -1.6
677,730 - PFR28_00633 0.23 -1.1
677,777 - PFR28_00633 0.30 -1.0
677,777 - PFR28_00633 0.30 -0.1
677,929 + PFR28_00633 0.54 -1.4
677,930 - PFR28_00633 0.55 -0.3
677,930 - PFR28_00633 0.55 -1.3
678,092 + PFR28_00633 0.80 -0.5
678,092 + PFR28_00633 0.80 -1.2
678,092 + PFR28_00633 0.80 -0.8
678,092 + PFR28_00633 0.80 -0.0
678,092 + PFR28_00633 0.80 -0.4
678,092 + PFR28_00633 0.80 -1.2
678,092 + PFR28_00633 0.80 -0.6
678,092 + PFR28_00633 0.80 -0.8
678,093 - PFR28_00633 0.80 -1.4
678,093 - PFR28_00633 0.80 -0.3
678,093 - PFR28_00633 0.80 -1.9
678,093 - PFR28_00633 0.80 -0.9
678,093 - PFR28_00633 0.80 -0.8
678,093 - PFR28_00633 0.80 -1.5
678,093 - PFR28_00633 0.80 -1.2
678,093 - PFR28_00633 0.80 +0.8
678,093 - PFR28_00633 0.80 -1.6
678,094 + PFR28_00633 0.80 -0.5
678,094 + PFR28_00633 0.80 -1.3
678,094 + PFR28_00633 0.80 -0.8
678,094 + PFR28_00633 0.80 -0.5
678,094 + PFR28_00633 0.80 +0.3
678,094 + PFR28_00633 0.80 -1.0
678,095 - PFR28_00633 0.81 -1.0
678,095 - PFR28_00633 0.81 +0.0
678,095 - PFR28_00633 0.81 -0.3
678,095 - PFR28_00633 0.81 +0.2
678,095 - PFR28_00633 0.81 -1.6
678,095 - PFR28_00633 0.81 -2.2
678,095 - PFR28_00633 0.81 -0.9
678,095 - PFR28_00633 0.81 -1.5
678,096 + PFR28_00633 0.81 -1.3
678,096 + PFR28_00633 0.81 -1.6
678,096 + PFR28_00633 0.81 -0.6
678,096 + PFR28_00633 0.81 -0.3
678,096 + PFR28_00633 0.81 -0.4
678,096 + PFR28_00633 0.81 -0.8
678,096 + PFR28_00633 0.81 -1.0
678,096 + PFR28_00633 0.81 -0.8
678,096 + PFR28_00633 0.81 -0.6
678,096 + PFR28_00633 0.81 +0.0
678,096 + PFR28_00633 0.81 -0.5
678,096 + PFR28_00633 0.81 -1.8
678,097 - PFR28_00633 0.81 +0.6
678,097 - PFR28_00633 0.81 -2.2
678,097 - PFR28_00633 0.81 -1.9
678,097 - PFR28_00633 0.81 -0.6
678,097 - PFR28_00633 0.81 -0.7
678,097 - PFR28_00633 0.81 +0.1
678,097 - PFR28_00633 0.81 -1.5
678,097 - PFR28_00633 0.81 -0.6
678,097 - PFR28_00633 0.81 -0.5
678,097 - PFR28_00633 0.81 +0.2
678,097 - PFR28_00633 0.81 -0.7
678,097 - PFR28_00633 0.81 -0.6
678,097 - PFR28_00633 0.81 -0.9
678,097 - PFR28_00633 0.81 -1.0
678,110 + PFR28_00633 0.83 +0.2
678,229 + +0.7
678,251 + +0.7
678,370 + -1.1
678,370 + +0.2
678,370 + +0.4
678,370 + +0.5
678,370 + -0.3
678,370 + -0.4
678,370 + -0.6
678,371 - +1.8
678,371 - -0.6
678,371 - -2.6
678,371 - -0.9
678,419 + -0.9
678,420 - +1.0
678,420 - +0.1
678,420 - -0.2
678,425 - -1.5
678,449 - +0.5
678,449 - -0.8
678,497 + PFR28_00634 0.15 +0.1
678,497 + PFR28_00634 0.15 +0.6
678,498 - PFR28_00634 0.15 -1.3
678,498 - PFR28_00634 0.15 +0.2
678,498 - PFR28_00634 0.15 -0.4
678,499 + PFR28_00634 0.15 +0.1
678,518 - PFR28_00634 0.19 +0.6
678,721 + PFR28_00634 0.59 -0.1
678,830 + PFR28_00634 0.80 +2.2
678,831 - PFR28_00634 0.80 -0.3
678,831 - PFR28_00634 0.80 -0.2
678,831 - PFR28_00634 0.80 +0.7
678,858 - PFR28_00634 0.86 +1.0
678,894 + -1.9
678,932 + -0.9
678,969 + +0.0
678,969 + -0.0
678,970 - -1.5
678,970 - +0.6
678,974 - -1.1
678,979 + +0.4
678,980 - -1.5
679,023 - +0.6
679,062 - -0.6

Or see this region's nucleotide sequence