Strain Fitness in Pseudomonas sp. RS175 around PFR28_00559

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00558 and PFR28_00559 are separated by 119 nucleotidesPFR28_00559 and PFR28_00560 are separated by 234 nucleotides PFR28_00558: PFR28_00558 - hypothetical protein, at 596,613 to 597,575 _00558 PFR28_00559: PFR28_00559 - ECF RNA polymerase sigma factor SigE, at 597,695 to 598,213 _00559 PFR28_00560: PFR28_00560 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 598,448 to 599,449 _00560 Position (kb) 597 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1at 596.707 kb on + strandat 596.707 kb on + strandat 596.707 kb on + strandat 596.708 kb on - strandat 596.708 kb on - strandat 596.708 kb on - strandat 596.767 kb on + strand, within PFR28_00558at 596.768 kb on - strand, within PFR28_00558at 596.768 kb on - strand, within PFR28_00558at 596.770 kb on + strand, within PFR28_00558at 596.770 kb on + strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.771 kb on - strand, within PFR28_00558at 596.791 kb on - strand, within PFR28_00558at 596.791 kb on - strand, within PFR28_00558at 596.791 kb on - strand, within PFR28_00558at 596.791 kb on - strand, within PFR28_00558at 596.791 kb on - strand, within PFR28_00558at 597.106 kb on + strand, within PFR28_00558at 597.106 kb on + strand, within PFR28_00558at 597.376 kb on - strand, within PFR28_00558at 597.376 kb on - strand, within PFR28_00558at 597.376 kb on - strand, within PFR28_00558at 597.613 kb on - strandat 597.637 kb on - strandat 597.688 kb on + strandat 597.688 kb on + strandat 597.689 kb on - strandat 597.766 kb on + strand, within PFR28_00559at 597.766 kb on + strand, within PFR28_00559at 597.767 kb on - strand, within PFR28_00559at 597.804 kb on + strand, within PFR28_00559at 598.067 kb on - strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.098 kb on + strand, within PFR28_00559at 598.099 kb on - strand, within PFR28_00559at 598.144 kb on + strand, within PFR28_00559at 598.144 kb on + strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.145 kb on - strand, within PFR28_00559at 598.171 kb on + strandat 598.171 kb on + strandat 598.171 kb on + strandat 598.172 kb on - strandat 598.251 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.406 kb on + strandat 598.407 kb on - strandat 598.407 kb on - strandat 598.477 kb on + strandat 598.478 kb on - strandat 598.515 kb on + strandat 598.515 kb on + strandat 598.516 kb on - strandat 598.526 kb on + strandat 598.526 kb on + strandat 598.526 kb on + strandat 598.527 kb on - strandat 598.624 kb on + strand, within PFR28_00560at 598.624 kb on + strand, within PFR28_00560at 598.625 kb on - strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.626 kb on + strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.627 kb on - strand, within PFR28_00560at 598.718 kb on + strand, within PFR28_00560at 598.719 kb on - strand, within PFR28_00560at 598.858 kb on - strand, within PFR28_00560at 598.872 kb on + strand, within PFR28_00560at 598.873 kb on - strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.902 kb on + strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 598.903 kb on - strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.046 kb on + strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.047 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560at 599.114 kb on - strand, within PFR28_00560

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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596,707 + -2.8
596,707 + +1.2
596,707 + -0.1
596,708 - -2.2
596,708 - -1.5
596,708 - -0.8
596,767 + PFR28_00558 0.16 -0.1
596,768 - PFR28_00558 0.16 +0.8
596,768 - PFR28_00558 0.16 +0.8
596,770 + PFR28_00558 0.16 +0.7
596,770 + PFR28_00558 0.16 +1.4
596,771 - PFR28_00558 0.16 -2.9
596,771 - PFR28_00558 0.16 -1.0
596,771 - PFR28_00558 0.16 -0.1
596,771 - PFR28_00558 0.16 +0.1
596,771 - PFR28_00558 0.16 +0.0
596,771 - PFR28_00558 0.16 -0.2
596,791 - PFR28_00558 0.18 +0.5
596,791 - PFR28_00558 0.18 -1.0
596,791 - PFR28_00558 0.18 +1.1
596,791 - PFR28_00558 0.18 -0.6
596,791 - PFR28_00558 0.18 -0.0
597,106 + PFR28_00558 0.51 +0.0
597,106 + PFR28_00558 0.51 -0.4
597,376 - PFR28_00558 0.79 +0.5
597,376 - PFR28_00558 0.79 -0.1
597,376 - PFR28_00558 0.79 +0.2
597,613 - -0.5
597,637 - +1.5
597,688 + -0.1
597,688 + -1.1
597,689 - +0.5
597,766 + PFR28_00559 0.14 +1.0
597,766 + PFR28_00559 0.14 +0.1
597,767 - PFR28_00559 0.14 +1.2
597,804 + PFR28_00559 0.21 +0.4
598,067 - PFR28_00559 0.72 +0.0
598,098 + PFR28_00559 0.78 +0.3
598,098 + PFR28_00559 0.78 +1.0
598,098 + PFR28_00559 0.78 -0.3
598,099 - PFR28_00559 0.78 +0.1
598,144 + PFR28_00559 0.87 -0.1
598,144 + PFR28_00559 0.87 -0.0
598,145 - PFR28_00559 0.87 +0.3
598,145 - PFR28_00559 0.87 +1.2
598,145 - PFR28_00559 0.87 +0.2
598,145 - PFR28_00559 0.87 +0.0
598,145 - PFR28_00559 0.87 +0.1
598,171 + -1.5
598,171 + -1.8
598,171 + +0.1
598,172 - -0.4
598,251 + -1.7
598,406 + -0.9
598,406 + +0.1
598,406 + -0.3
598,406 + -1.0
598,406 + -0.5
598,407 - +0.6
598,407 - +0.2
598,477 + -0.9
598,478 - +1.1
598,515 + -1.2
598,515 + +0.0
598,516 - +0.3
598,526 + -0.7
598,526 + -0.9
598,526 + -0.2
598,527 - -0.2
598,624 + PFR28_00560 0.18 -1.0
598,624 + PFR28_00560 0.18 -0.2
598,625 - PFR28_00560 0.18 +0.8
598,626 + PFR28_00560 0.18 -0.1
598,626 + PFR28_00560 0.18 -1.0
598,626 + PFR28_00560 0.18 -1.0
598,626 + PFR28_00560 0.18 -2.1
598,626 + PFR28_00560 0.18 -1.1
598,626 + PFR28_00560 0.18 -0.3
598,626 + PFR28_00560 0.18 -0.8
598,626 + PFR28_00560 0.18 -0.8
598,626 + PFR28_00560 0.18 -1.0
598,627 - PFR28_00560 0.18 -0.5
598,627 - PFR28_00560 0.18 +0.1
598,627 - PFR28_00560 0.18 -0.5
598,627 - PFR28_00560 0.18 -0.1
598,627 - PFR28_00560 0.18 +0.6
598,718 + PFR28_00560 0.27 -1.2
598,719 - PFR28_00560 0.27 -2.7
598,858 - PFR28_00560 0.41 -1.5
598,872 + PFR28_00560 0.42 -0.3
598,873 - PFR28_00560 0.42 -0.4
598,902 + PFR28_00560 0.45 +0.8
598,902 + PFR28_00560 0.45 +0.2
598,902 + PFR28_00560 0.45 -0.3
598,902 + PFR28_00560 0.45 -1.0
598,903 - PFR28_00560 0.45 -0.2
598,903 - PFR28_00560 0.45 -1.5
598,903 - PFR28_00560 0.45 +0.3
598,903 - PFR28_00560 0.45 -2.5
598,903 - PFR28_00560 0.45 -1.1
598,903 - PFR28_00560 0.45 +0.2
598,903 - PFR28_00560 0.45 -0.4
599,046 + PFR28_00560 0.60 -0.1
599,046 + PFR28_00560 0.60 -1.8
599,046 + PFR28_00560 0.60 -0.8
599,046 + PFR28_00560 0.60 -0.4
599,046 + PFR28_00560 0.60 -0.5
599,046 + PFR28_00560 0.60 -1.1
599,046 + PFR28_00560 0.60 -0.4
599,047 - PFR28_00560 0.60 -1.0
599,047 - PFR28_00560 0.60 -0.0
599,047 - PFR28_00560 0.60 +0.1
599,047 - PFR28_00560 0.60 -1.1
599,047 - PFR28_00560 0.60 -0.1
599,047 - PFR28_00560 0.60 -0.3
599,114 - PFR28_00560 0.66 +0.8
599,114 - PFR28_00560 0.66 +0.1

Or see this region's nucleotide sequence