Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00471 and PFR28_00472 are separated by 83 nucleotides PFR28_00472 and PFR28_00473 are separated by 8 nucleotides PFR28_00473 and PFR28_00474 are separated by 43 nucleotides
PFR28_00471: PFR28_00471 - Nicotinamide-nucleotide amidohydrolase PncC, at 506,412 to 506,912
_00471
PFR28_00472: PFR28_00472 - Protein RecA, at 506,996 to 508,048
_00472
PFR28_00473: PFR28_00473 - Regulatory protein RecX, at 508,057 to 508,524
_00473
PFR28_00474: PFR28_00474 - hypothetical protein, at 508,568 to 509,686
_00474
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.030 kb on + strand at 506.030 kb on + strand at 506.031 kb on - strand at 506.031 kb on - strand at 506.031 kb on - strand at 506.125 kb on + strand at 506.125 kb on + strand at 506.126 kb on - strand at 506.126 kb on - strand at 506.126 kb on - strand at 506.126 kb on - strand at 506.126 kb on - strand at 506.161 kb on + strand at 506.161 kb on + strand at 506.162 kb on - strand at 506.162 kb on - strand at 506.203 kb on + strand at 506.277 kb on - strand at 506.277 kb on - strand at 506.277 kb on - strand at 506.278 kb on + strand at 506.278 kb on + strand at 506.279 kb on - strand at 506.279 kb on - strand at 506.279 kb on - strand at 506.279 kb on - strand at 506.279 kb on - strand at 506.300 kb on + strand at 506.300 kb on + strand at 506.301 kb on - strand at 506.301 kb on - strand at 506.375 kb on + strand at 506.375 kb on + strand at 506.571 kb on + strand, within PFR28_00471 at 506.571 kb on + strand, within PFR28_00471 at 506.571 kb on + strand, within PFR28_00471 at 506.572 kb on - strand, within PFR28_00471 at 506.572 kb on - strand, within PFR28_00471 at 506.572 kb on - strand, within PFR28_00471 at 506.572 kb on - strand, within PFR28_00471 at 506.864 kb on - strand at 506.981 kb on + strand at 506.981 kb on + strand at 506.981 kb on + strand at 506.981 kb on + strand at 506.982 kb on - strand at 506.994 kb on + strand at 507.101 kb on - strand at 507.186 kb on - strand, within PFR28_00472 at 507.442 kb on - strand, within PFR28_00472 at 507.446 kb on - strand, within PFR28_00472 at 507.446 kb on - strand, within PFR28_00472 at 507.644 kb on + strand, within PFR28_00472 at 507.644 kb on + strand, within PFR28_00472 at 507.645 kb on - strand, within PFR28_00472 at 507.797 kb on + strand, within PFR28_00472 at 507.798 kb on - strand, within PFR28_00472 at 507.863 kb on + strand, within PFR28_00472 at 507.863 kb on + strand, within PFR28_00472 at 507.869 kb on + strand, within PFR28_00472 at 508.042 kb on + strand at 508.042 kb on + strand at 508.043 kb on - strand at 508.043 kb on - strand at 508.068 kb on - strand at 508.074 kb on + strand at 508.416 kb on - strand, within PFR28_00473 at 508.462 kb on + strand, within PFR28_00473 at 508.463 kb on - strand, within PFR28_00473 at 508.472 kb on - strand, within PFR28_00473 at 508.537 kb on + strand at 508.538 kb on - strand at 508.538 kb on - strand at 508.562 kb on - strand at 508.750 kb on - strand, within PFR28_00474 at 508.750 kb on - strand, within PFR28_00474 at 508.885 kb on + strand, within PFR28_00474 at 508.885 kb on + strand, within PFR28_00474 at 508.886 kb on - strand, within PFR28_00474 at 508.886 kb on - strand, within PFR28_00474 at 508.886 kb on - strand, within PFR28_00474 at 508.890 kb on + strand, within PFR28_00474 at 508.891 kb on - strand, within PFR28_00474 at 508.891 kb on - strand, within PFR28_00474 at 508.891 kb on - strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.929 kb on + strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.930 kb on - strand, within PFR28_00474 at 508.931 kb on + strand, within PFR28_00474 at 508.931 kb on + strand, within PFR28_00474 at 508.931 kb on + strand, within PFR28_00474 at 508.931 kb on + strand, within PFR28_00474 at 508.931 kb on + strand, within PFR28_00474 at 508.932 kb on - strand, within PFR28_00474 at 508.968 kb on + strand, within PFR28_00474 at 508.968 kb on + strand, within PFR28_00474 at 508.969 kb on - strand, within PFR28_00474 at 509.042 kb on + strand, within PFR28_00474 at 509.042 kb on + strand, within PFR28_00474 at 509.043 kb on - strand, within PFR28_00474 at 509.043 kb on - strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.045 kb on + strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.046 kb on - strand, within PFR28_00474 at 509.048 kb on + strand, within PFR28_00474 at 509.048 kb on + strand, within PFR28_00474
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 506,030 + +1.2 506,030 + +1.4 506,031 - -0.1 506,031 - +0.8 506,031 - -1.7 506,125 + -1.1 506,125 + +0.8 506,126 - -0.2 506,126 - +0.6 506,126 - +0.1 506,126 - +0.3 506,126 - -0.0 506,161 + +0.1 506,161 + -1.0 506,162 - +0.1 506,162 - -1.4 506,203 + +0.1 506,277 - -0.6 506,277 - -1.4 506,277 - -2.6 506,278 + -1.3 506,278 + -0.6 506,279 - +0.4 506,279 - +0.4 506,279 - -0.1 506,279 - -0.1 506,279 - -0.7 506,300 + +0.5 506,300 + +0.7 506,301 - +0.8 506,301 - +2.5 506,375 + -2.2 506,375 + +1.1 506,571 + PFR28_00471 0.32 +1.3 506,571 + PFR28_00471 0.32 -0.5 506,571 + PFR28_00471 0.32 -0.6 506,572 - PFR28_00471 0.32 +0.6 506,572 - PFR28_00471 0.32 -1.2 506,572 - PFR28_00471 0.32 -0.3 506,572 - PFR28_00471 0.32 -0.7 506,864 - +1.2 506,981 + -0.3 506,981 + -0.9 506,981 + +0.2 506,981 + -0.5 506,982 - -1.3 506,994 + -0.0 507,101 - -0.3 507,186 - PFR28_00472 0.18 +1.5 507,442 - PFR28_00472 0.42 -1.0 507,446 - PFR28_00472 0.43 -0.3 507,446 - PFR28_00472 0.43 -2.4 507,644 + PFR28_00472 0.62 -1.7 507,644 + PFR28_00472 0.62 -1.1 507,645 - PFR28_00472 0.62 -1.7 507,797 + PFR28_00472 0.76 -1.5 507,798 - PFR28_00472 0.76 -0.4 507,863 + PFR28_00472 0.82 -2.2 507,863 + PFR28_00472 0.82 -0.6 507,869 + PFR28_00472 0.83 -0.1 508,042 + +1.0 508,042 + +0.1 508,043 - -3.0 508,043 - -0.1 508,068 - +0.9 508,074 + -1.1 508,416 - PFR28_00473 0.77 +0.7 508,462 + PFR28_00473 0.87 -1.3 508,463 - PFR28_00473 0.87 -1.6 508,472 - PFR28_00473 0.89 +0.7 508,537 + -0.9 508,538 - +1.5 508,538 - +0.9 508,562 - +0.3 508,750 - PFR28_00474 0.16 +0.5 508,750 - PFR28_00474 0.16 +0.5 508,885 + PFR28_00474 0.28 -0.8 508,885 + PFR28_00474 0.28 +0.1 508,886 - PFR28_00474 0.28 +0.1 508,886 - PFR28_00474 0.28 -0.1 508,886 - PFR28_00474 0.28 -0.2 508,890 + PFR28_00474 0.29 -0.4 508,891 - PFR28_00474 0.29 -0.9 508,891 - PFR28_00474 0.29 +0.5 508,891 - PFR28_00474 0.29 +0.3 508,929 + PFR28_00474 0.32 -0.3 508,929 + PFR28_00474 0.32 -1.0 508,929 + PFR28_00474 0.32 +0.3 508,929 + PFR28_00474 0.32 +0.7 508,929 + PFR28_00474 0.32 -0.5 508,929 + PFR28_00474 0.32 -0.1 508,930 - PFR28_00474 0.32 -1.1 508,930 - PFR28_00474 0.32 +0.1 508,930 - PFR28_00474 0.32 -0.5 508,930 - PFR28_00474 0.32 -0.6 508,930 - PFR28_00474 0.32 +0.1 508,930 - PFR28_00474 0.32 -0.3 508,930 - PFR28_00474 0.32 -0.5 508,930 - PFR28_00474 0.32 -0.2 508,931 + PFR28_00474 0.32 +0.6 508,931 + PFR28_00474 0.32 +0.2 508,931 + PFR28_00474 0.32 +0.6 508,931 + PFR28_00474 0.32 +0.8 508,931 + PFR28_00474 0.32 +0.1 508,932 - PFR28_00474 0.33 -0.1 508,968 + PFR28_00474 0.36 -0.2 508,968 + PFR28_00474 0.36 -0.9 508,969 - PFR28_00474 0.36 +0.2 509,042 + PFR28_00474 0.42 +0.6 509,042 + PFR28_00474 0.42 -0.4 509,043 - PFR28_00474 0.42 +0.4 509,043 - PFR28_00474 0.42 +0.3 509,045 + PFR28_00474 0.43 +0.4 509,045 + PFR28_00474 0.43 +0.6 509,045 + PFR28_00474 0.43 -1.3 509,045 + PFR28_00474 0.43 -0.5 509,045 + PFR28_00474 0.43 -1.8 509,045 + PFR28_00474 0.43 -1.2 509,045 + PFR28_00474 0.43 -0.5 509,046 - PFR28_00474 0.43 -0.4 509,046 - PFR28_00474 0.43 +0.6 509,046 - PFR28_00474 0.43 -0.2 509,046 - PFR28_00474 0.43 +0.1 509,046 - PFR28_00474 0.43 +0.2 509,046 - PFR28_00474 0.43 -1.9 509,046 - PFR28_00474 0.43 +0.3 509,046 - PFR28_00474 0.43 +0.6 509,048 + PFR28_00474 0.43 +0.3 509,048 + PFR28_00474 0.43 -0.8
Or see this region's nucleotide sequence