Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00426 and PFR28_00427 are separated by 105 nucleotides PFR28_00427 and PFR28_00428 are separated by 532 nucleotides PFR28_00428 and PFR28_00429 are separated by 142 nucleotides
PFR28_00426: PFR28_00426 - hypothetical protein, at 467,147 to 467,995
_00426
PFR28_00427: PFR28_00427 - RNA polymerase sigma factor RpoS, at 468,101 to 469,111
_00427
PFR28_00428: PFR28_00428 - Ferredoxin 1, at 469,644 to 469,967
_00428
PFR28_00429: PFR28_00429 - DNA mismatch repair protein MutS, at 470,110 to 472,689
_00429
Position (kb) 468
469
470 Strain fitness (log2 ratio) -2
-1
0
1
2 at 467.173 kb on + strand at 467.173 kb on + strand at 467.173 kb on + strand at 467.173 kb on + strand at 467.173 kb on + strand at 467.173 kb on + strand at 467.173 kb on + strand at 467.174 kb on - strand at 467.174 kb on - strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.996 kb on + strand at 467.997 kb on - strand at 467.997 kb on - strand at 467.997 kb on - strand at 467.997 kb on - strand at 467.997 kb on - strand at 467.997 kb on - strand at 468.021 kb on + strand at 468.022 kb on - strand at 468.022 kb on - strand at 468.022 kb on - strand at 468.022 kb on - strand at 468.022 kb on - strand at 468.052 kb on + strand at 468.094 kb on + strand at 468.094 kb on + strand at 468.094 kb on + strand at 468.095 kb on - strand at 468.095 kb on - strand at 468.095 kb on - strand at 468.095 kb on - strand at 468.095 kb on - strand at 468.095 kb on - strand at 468.096 kb on + strand at 468.096 kb on + strand at 468.096 kb on + strand at 468.096 kb on + strand at 468.096 kb on + strand at 468.096 kb on + strand at 468.097 kb on - strand at 468.097 kb on - strand at 468.250 kb on + strand, within PFR28_00427 at 468.250 kb on + strand, within PFR28_00427 at 468.250 kb on + strand, within PFR28_00427 at 468.250 kb on + strand, within PFR28_00427 at 468.251 kb on - strand, within PFR28_00427 at 468.251 kb on - strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.259 kb on + strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.260 kb on - strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.263 kb on + strand, within PFR28_00427 at 468.264 kb on - strand, within PFR28_00427 at 468.264 kb on - strand, within PFR28_00427 at 468.264 kb on - strand, within PFR28_00427 at 468.264 kb on - strand, within PFR28_00427 at 468.272 kb on + strand, within PFR28_00427 at 468.272 kb on + strand, within PFR28_00427 at 468.273 kb on - strand, within PFR28_00427 at 468.302 kb on + strand, within PFR28_00427 at 468.302 kb on + strand, within PFR28_00427 at 468.303 kb on - strand, within PFR28_00427 at 468.303 kb on - strand, within PFR28_00427 at 468.303 kb on - strand, within PFR28_00427 at 468.446 kb on + strand, within PFR28_00427 at 468.446 kb on + strand, within PFR28_00427 at 468.446 kb on + strand, within PFR28_00427 at 468.447 kb on - strand, within PFR28_00427 at 468.554 kb on + strand, within PFR28_00427 at 468.554 kb on + strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.555 kb on - strand, within PFR28_00427 at 468.611 kb on - strand, within PFR28_00427 at 468.654 kb on - strand, within PFR28_00427 at 468.654 kb on - strand, within PFR28_00427 at 469.110 kb on - strand at 469.110 kb on - strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.176 kb on + strand at 469.177 kb on - strand at 469.186 kb on + strand at 469.187 kb on - strand at 469.187 kb on - strand at 469.233 kb on + strand at 469.233 kb on + strand at 469.233 kb on + strand at 469.239 kb on + strand at 469.240 kb on - strand at 469.252 kb on + strand at 469.274 kb on + strand at 469.274 kb on + strand at 469.309 kb on + strand at 469.312 kb on - strand at 469.426 kb on + strand at 469.426 kb on + strand at 469.426 kb on + strand at 469.429 kb on + strand at 469.429 kb on + strand at 469.430 kb on - strand at 469.430 kb on - strand at 469.533 kb on + strand at 469.579 kb on + strand at 470.037 kb on - strand at 470.054 kb on - strand at 470.054 kb on - strand at 470.054 kb on - strand at 470.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 467,173 + -0.9 467,173 + +0.4 467,173 + -0.1 467,173 + +0.6 467,173 + +0.9 467,173 + -1.2 467,173 + -0.5 467,174 - +0.6 467,174 - -0.6 467,996 + -1.8 467,996 + +0.1 467,996 + +0.5 467,996 + +0.5 467,996 + +0.4 467,996 + -1.1 467,996 + +1.6 467,996 + +1.6 467,996 + +0.3 467,997 - -0.0 467,997 - -0.8 467,997 - -0.1 467,997 - -1.0 467,997 - +0.8 467,997 - +0.8 468,021 + +0.6 468,022 - -0.7 468,022 - +0.2 468,022 - +0.4 468,022 - +0.3 468,022 - +0.1 468,052 + -0.1 468,094 + +0.2 468,094 + -0.2 468,094 + +0.4 468,095 - -0.5 468,095 - +0.6 468,095 - +0.3 468,095 - -1.7 468,095 - +0.7 468,095 - +1.1 468,096 + -0.0 468,096 + +0.9 468,096 + +0.2 468,096 + -0.0 468,096 + +0.1 468,096 + +0.9 468,097 - +1.1 468,097 - +0.3 468,250 + PFR28_00427 0.15 +0.7 468,250 + PFR28_00427 0.15 +0.3 468,250 + PFR28_00427 0.15 -0.9 468,250 + PFR28_00427 0.15 +0.1 468,251 - PFR28_00427 0.15 +0.5 468,251 - PFR28_00427 0.15 +2.3 468,259 + PFR28_00427 0.16 +1.3 468,259 + PFR28_00427 0.16 -0.5 468,259 + PFR28_00427 0.16 +0.4 468,259 + PFR28_00427 0.16 +0.3 468,259 + PFR28_00427 0.16 -1.0 468,259 + PFR28_00427 0.16 +0.7 468,259 + PFR28_00427 0.16 +0.2 468,259 + PFR28_00427 0.16 +0.4 468,259 + PFR28_00427 0.16 +1.1 468,259 + PFR28_00427 0.16 +0.3 468,259 + PFR28_00427 0.16 -0.3 468,259 + PFR28_00427 0.16 +0.9 468,259 + PFR28_00427 0.16 +0.9 468,259 + PFR28_00427 0.16 +0.7 468,259 + PFR28_00427 0.16 +0.5 468,259 + PFR28_00427 0.16 +1.2 468,259 + PFR28_00427 0.16 +0.6 468,259 + PFR28_00427 0.16 +0.4 468,259 + PFR28_00427 0.16 +0.2 468,259 + PFR28_00427 0.16 +0.3 468,259 + PFR28_00427 0.16 +0.3 468,259 + PFR28_00427 0.16 -0.1 468,259 + PFR28_00427 0.16 -0.1 468,259 + PFR28_00427 0.16 -0.6 468,259 + PFR28_00427 0.16 +0.3 468,259 + PFR28_00427 0.16 -0.7 468,259 + PFR28_00427 0.16 -0.4 468,259 + PFR28_00427 0.16 +0.7 468,259 + PFR28_00427 0.16 +0.7 468,259 + PFR28_00427 0.16 -0.2 468,259 + PFR28_00427 0.16 +1.1 468,259 + PFR28_00427 0.16 +2.5 468,259 + PFR28_00427 0.16 +0.3 468,260 - PFR28_00427 0.16 +0.6 468,260 - PFR28_00427 0.16 -0.4 468,260 - PFR28_00427 0.16 +0.1 468,260 - PFR28_00427 0.16 +0.5 468,260 - PFR28_00427 0.16 +0.5 468,260 - PFR28_00427 0.16 +0.8 468,260 - PFR28_00427 0.16 +0.3 468,260 - PFR28_00427 0.16 +0.8 468,260 - PFR28_00427 0.16 +0.9 468,260 - PFR28_00427 0.16 +1.6 468,260 - PFR28_00427 0.16 +0.5 468,260 - PFR28_00427 0.16 -0.1 468,260 - PFR28_00427 0.16 +0.7 468,260 - PFR28_00427 0.16 -0.1 468,260 - PFR28_00427 0.16 +0.5 468,260 - PFR28_00427 0.16 +0.6 468,260 - PFR28_00427 0.16 -0.1 468,260 - PFR28_00427 0.16 -0.1 468,260 - PFR28_00427 0.16 -0.6 468,260 - PFR28_00427 0.16 -0.3 468,260 - PFR28_00427 0.16 -0.3 468,260 - PFR28_00427 0.16 +0.5 468,260 - PFR28_00427 0.16 +0.2 468,260 - PFR28_00427 0.16 +0.2 468,260 - PFR28_00427 0.16 +0.9 468,260 - PFR28_00427 0.16 -0.2 468,260 - PFR28_00427 0.16 +0.1 468,260 - PFR28_00427 0.16 +0.1 468,263 + PFR28_00427 0.16 +0.2 468,263 + PFR28_00427 0.16 -0.3 468,263 + PFR28_00427 0.16 +1.8 468,263 + PFR28_00427 0.16 +0.4 468,263 + PFR28_00427 0.16 +0.5 468,263 + PFR28_00427 0.16 +0.7 468,263 + PFR28_00427 0.16 +0.7 468,263 + PFR28_00427 0.16 +0.7 468,263 + PFR28_00427 0.16 +1.4 468,263 + PFR28_00427 0.16 +0.5 468,263 + PFR28_00427 0.16 +0.8 468,264 - PFR28_00427 0.16 -0.4 468,264 - PFR28_00427 0.16 +1.4 468,264 - PFR28_00427 0.16 -0.8 468,264 - PFR28_00427 0.16 +0.5 468,272 + PFR28_00427 0.17 +1.6 468,272 + PFR28_00427 0.17 +1.5 468,273 - PFR28_00427 0.17 -0.7 468,302 + PFR28_00427 0.20 +1.4 468,302 + PFR28_00427 0.20 -0.3 468,303 - PFR28_00427 0.20 -1.0 468,303 - PFR28_00427 0.20 +2.1 468,303 - PFR28_00427 0.20 +0.8 468,446 + PFR28_00427 0.34 +0.8 468,446 + PFR28_00427 0.34 +0.3 468,446 + PFR28_00427 0.34 +0.1 468,447 - PFR28_00427 0.34 -0.1 468,554 + PFR28_00427 0.45 +0.1 468,554 + PFR28_00427 0.45 +0.9 468,555 - PFR28_00427 0.45 +0.6 468,555 - PFR28_00427 0.45 -1.1 468,555 - PFR28_00427 0.45 -0.2 468,555 - PFR28_00427 0.45 +0.4 468,555 - PFR28_00427 0.45 +0.8 468,555 - PFR28_00427 0.45 +0.7 468,555 - PFR28_00427 0.45 -0.6 468,555 - PFR28_00427 0.45 -0.1 468,555 - PFR28_00427 0.45 +0.1 468,611 - PFR28_00427 0.50 +0.9 468,654 - PFR28_00427 0.55 +0.4 468,654 - PFR28_00427 0.55 +0.9 469,110 - +0.8 469,110 - +0.0 469,176 + +0.2 469,176 + -0.1 469,176 + +0.5 469,176 + -2.1 469,176 + -0.0 469,176 + -0.0 469,176 + -0.4 469,177 - -0.0 469,186 + -1.0 469,187 - -0.3 469,187 - -0.1 469,233 + -0.1 469,233 + +0.1 469,233 + +0.9 469,239 + +1.2 469,240 - -0.3 469,252 + -1.6 469,274 + +0.1 469,274 + +0.6 469,309 + +1.5 469,312 - +0.2 469,426 + +0.2 469,426 + -1.5 469,426 + -0.7 469,429 + +0.9 469,429 + +1.2 469,430 - +1.0 469,430 - +0.5 469,533 + +0.3 469,579 + -0.1 470,037 - -1.8 470,054 - +0.5 470,054 - +0.8 470,054 - +0.5 470,089 - +1.1
Or see this region's nucleotide sequence