Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00365 and PFR28_00366 are separated by 48 nucleotides PFR28_00366 and PFR28_00367 are separated by 339 nucleotides PFR28_00367 and PFR28_00368 are separated by 276 nucleotides
PFR28_00365: PFR28_00365 - Peptidoglycan-associated lipoprotein, at 399,849 to 400,640
_00365
PFR28_00366: PFR28_00366 - hypothetical protein, at 400,689 to 401,105
_00366
PFR28_00367: PFR28_00367 - hypothetical protein, at 401,445 to 401,789
_00367
PFR28_00368: PFR28_00368 - Phosphoenolpyruvate carboxylase, at 402,066 to 404,696
_00368
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.534 kb on + strand, within PFR28_00365 at 400.535 kb on - strand, within PFR28_00365 at 400.640 kb on + strand at 400.640 kb on + strand at 400.640 kb on + strand at 400.640 kb on + strand at 400.640 kb on + strand at 400.640 kb on + strand at 400.640 kb on + strand at 400.641 kb on - strand at 400.641 kb on - strand at 400.641 kb on - strand at 400.641 kb on - strand at 400.641 kb on - strand at 400.656 kb on + strand at 400.656 kb on + strand at 400.656 kb on + strand at 400.657 kb on - strand at 400.657 kb on - strand at 400.657 kb on - strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.669 kb on + strand at 400.670 kb on - strand at 400.670 kb on - strand at 400.670 kb on - strand at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.843 kb on + strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 400.844 kb on - strand, within PFR28_00366 at 401.018 kb on + strand, within PFR28_00366 at 401.084 kb on + strand at 401.084 kb on + strand at 401.084 kb on + strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.085 kb on - strand at 401.090 kb on + strand at 401.090 kb on + strand at 401.090 kb on + strand at 401.090 kb on + strand at 401.091 kb on - strand at 401.091 kb on - strand at 401.091 kb on - strand at 401.186 kb on + strand at 401.187 kb on - strand at 401.190 kb on + strand at 401.190 kb on + strand at 401.191 kb on - strand at 401.191 kb on - strand at 401.207 kb on - strand at 401.213 kb on - strand at 401.459 kb on + strand at 401.536 kb on + strand, within PFR28_00367 at 401.536 kb on + strand, within PFR28_00367 at 401.536 kb on + strand, within PFR28_00367 at 401.537 kb on - strand, within PFR28_00367 at 401.537 kb on - strand, within PFR28_00367 at 401.537 kb on - strand, within PFR28_00367 at 401.537 kb on - strand, within PFR28_00367 at 401.587 kb on + strand, within PFR28_00367 at 401.587 kb on + strand, within PFR28_00367 at 401.587 kb on + strand, within PFR28_00367 at 401.587 kb on + strand, within PFR28_00367 at 401.588 kb on - strand, within PFR28_00367 at 401.588 kb on - strand, within PFR28_00367 at 401.588 kb on - strand, within PFR28_00367 at 401.588 kb on - strand, within PFR28_00367 at 401.665 kb on + strand, within PFR28_00367 at 401.665 kb on + strand, within PFR28_00367 at 401.665 kb on + strand, within PFR28_00367 at 401.666 kb on - strand, within PFR28_00367 at 401.849 kb on + strand at 401.849 kb on + strand at 401.849 kb on + strand at 401.853 kb on + strand at 401.854 kb on - strand at 401.854 kb on - strand at 401.861 kb on + strand at 401.861 kb on + strand at 401.862 kb on - strand at 401.862 kb on - strand at 401.987 kb on + strand at 401.988 kb on - strand at 402.032 kb on + strand at 402.033 kb on - strand at 402.046 kb on + strand at 402.046 kb on + strand at 402.046 kb on + strand at 402.047 kb on - strand at 402.047 kb on - strand at 402.047 kb on - strand at 402.047 kb on - strand at 402.321 kb on + strand at 402.322 kb on - strand at 402.516 kb on + strand, within PFR28_00368 at 402.517 kb on - strand, within PFR28_00368 at 402.723 kb on + strand, within PFR28_00368 at 402.724 kb on - strand, within PFR28_00368
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 400,534 + PFR28_00365 0.86 +0.7 400,535 - PFR28_00365 0.87 -0.5 400,640 + -0.0 400,640 + +0.3 400,640 + -0.8 400,640 + -0.0 400,640 + -0.4 400,640 + -0.2 400,640 + -0.3 400,641 - +0.4 400,641 - -0.3 400,641 - -0.3 400,641 - +0.3 400,641 - -0.2 400,656 + -0.7 400,656 + +0.3 400,656 + -0.1 400,657 - +0.5 400,657 - -0.6 400,657 - -0.1 400,669 + -1.0 400,669 + -0.7 400,669 + -0.5 400,669 + -0.1 400,669 + +0.6 400,669 + -1.5 400,669 + +0.5 400,669 + -0.0 400,670 - -0.2 400,670 - +1.1 400,670 - +0.2 400,843 + PFR28_00366 0.37 -2.1 400,843 + PFR28_00366 0.37 +0.2 400,843 + PFR28_00366 0.37 +0.5 400,843 + PFR28_00366 0.37 +0.7 400,843 + PFR28_00366 0.37 +0.2 400,843 + PFR28_00366 0.37 -1.0 400,843 + PFR28_00366 0.37 -0.8 400,844 - PFR28_00366 0.37 -0.4 400,844 - PFR28_00366 0.37 +0.2 400,844 - PFR28_00366 0.37 +0.8 400,844 - PFR28_00366 0.37 -0.7 400,844 - PFR28_00366 0.37 -0.7 400,844 - PFR28_00366 0.37 +1.0 401,018 + PFR28_00366 0.79 +2.1 401,084 + -0.2 401,084 + +1.8 401,084 + +0.4 401,085 - +0.4 401,085 - -0.8 401,085 - -0.5 401,085 - +0.6 401,085 - -0.3 401,085 - -1.5 401,085 - -0.3 401,090 + +0.5 401,090 + -0.2 401,090 + +1.4 401,090 + -0.5 401,091 - +0.9 401,091 - +0.2 401,091 - +1.0 401,186 + -0.5 401,187 - -0.4 401,190 + +0.2 401,190 + +0.4 401,191 - +0.3 401,191 - -0.3 401,207 - +0.3 401,213 - -0.3 401,459 + +0.4 401,536 + PFR28_00367 0.26 +0.8 401,536 + PFR28_00367 0.26 +0.6 401,536 + PFR28_00367 0.26 +1.0 401,537 - PFR28_00367 0.27 +1.8 401,537 - PFR28_00367 0.27 +1.3 401,537 - PFR28_00367 0.27 +1.1 401,537 - PFR28_00367 0.27 -0.1 401,587 + PFR28_00367 0.41 +1.8 401,587 + PFR28_00367 0.41 -0.5 401,587 + PFR28_00367 0.41 +1.2 401,587 + PFR28_00367 0.41 -0.0 401,588 - PFR28_00367 0.41 +0.2 401,588 - PFR28_00367 0.41 -0.7 401,588 - PFR28_00367 0.41 +0.1 401,588 - PFR28_00367 0.41 -0.6 401,665 + PFR28_00367 0.64 +0.3 401,665 + PFR28_00367 0.64 +1.6 401,665 + PFR28_00367 0.64 -0.3 401,666 - PFR28_00367 0.64 -0.1 401,849 + +2.2 401,849 + -0.5 401,849 + +0.5 401,853 + -0.3 401,854 - -0.6 401,854 - +1.3 401,861 + +0.0 401,861 + +0.1 401,862 - +1.3 401,862 - +0.2 401,987 + -0.2 401,988 - +1.0 402,032 + +0.1 402,033 - -0.8 402,046 + -0.0 402,046 + +0.4 402,046 + +0.3 402,047 - +0.9 402,047 - -0.8 402,047 - -0.3 402,047 - -0.0 402,321 + -0.4 402,322 - +0.0 402,516 + PFR28_00368 0.17 -0.4 402,517 - PFR28_00368 0.17 +0.8 402,723 + PFR28_00368 0.25 -0.8 402,724 - PFR28_00368 0.25 +0.8
Or see this region's nucleotide sequence