Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00329 and PFR28_00330 are separated by 9 nucleotides PFR28_00330 and PFR28_00331 are separated by 131 nucleotides PFR28_00331 and PFR28_00332 are separated by 169 nucleotides
PFR28_00329: PFR28_00329 - tRNA (guanine-N(1)-)-methyltransferase, at 358,739 to 359,527
_00329
PFR28_00330: PFR28_00330 - 50S ribosomal protein L19, at 359,537 to 359,887
_00330
PFR28_00331: PFR28_00331 - Tyrosine recombinase XerD, at 360,019 to 360,915
_00331
PFR28_00332: PFR28_00332 - Thiol:disulfide interchange protein DsbC, at 361,085 to 361,816
_00332
Position (kb) 360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.485 kb on + strand at 359.485 kb on + strand at 359.485 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.885 kb on + strand at 359.966 kb on + strand at 359.967 kb on - strand at 359.967 kb on - strand at 359.967 kb on - strand at 360.018 kb on + strand at 360.018 kb on + strand at 360.019 kb on - strand at 360.019 kb on - strand at 360.019 kb on - strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.044 kb on + strand at 360.045 kb on - strand at 360.268 kb on + strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.269 kb on - strand, within PFR28_00331 at 360.274 kb on + strand, within PFR28_00331 at 360.351 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.448 kb on + strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.449 kb on - strand, within PFR28_00331 at 360.581 kb on + strand, within PFR28_00331 at 360.595 kb on + strand, within PFR28_00331 at 360.595 kb on + strand, within PFR28_00331 at 360.699 kb on + strand, within PFR28_00331 at 360.828 kb on + strand at 360.829 kb on - strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.853 kb on + strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.854 kb on - strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.991 kb on + strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.992 kb on - strand at 360.998 kb on + strand at 360.999 kb on - strand at 360.999 kb on - strand at 360.999 kb on - strand at 361.168 kb on + strand, within PFR28_00332 at 361.244 kb on + strand, within PFR28_00332 at 361.244 kb on + strand, within PFR28_00332 at 361.277 kb on + strand, within PFR28_00332 at 361.278 kb on - strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.298 kb on + strand, within PFR28_00332 at 361.299 kb on - strand, within PFR28_00332 at 361.299 kb on - strand, within PFR28_00332 at 361.421 kb on + strand, within PFR28_00332 at 361.481 kb on + strand, within PFR28_00332 at 361.482 kb on - strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.541 kb on + strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.542 kb on - strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.713 kb on + strand, within PFR28_00332 at 361.714 kb on - strand, within PFR28_00332 at 361.714 kb on - strand, within PFR28_00332 at 361.727 kb on - strand, within PFR28_00332 at 361.758 kb on + strand at 361.769 kb on + strand at 361.769 kb on + strand at 361.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 359,485 + +0.3 359,485 + +1.2 359,485 + +0.5 359,885 + -0.2 359,885 + -0.4 359,885 + +0.3 359,885 + -0.1 359,885 + +0.5 359,885 + +2.5 359,885 + -0.3 359,885 + -2.4 359,885 + +0.3 359,885 + -0.7 359,966 + -0.1 359,967 - -0.3 359,967 - -0.9 359,967 - -0.7 360,018 + +0.8 360,018 + +0.8 360,019 - +0.5 360,019 - -0.1 360,019 - -1.3 360,044 + +1.1 360,044 + +0.8 360,044 + -0.1 360,044 + -1.8 360,045 - -0.7 360,268 + PFR28_00331 0.28 -0.5 360,269 - PFR28_00331 0.28 -2.2 360,269 - PFR28_00331 0.28 -2.1 360,269 - PFR28_00331 0.28 +0.5 360,274 + PFR28_00331 0.28 +1.2 360,351 + PFR28_00331 0.37 -0.5 360,448 + PFR28_00331 0.48 -2.2 360,448 + PFR28_00331 0.48 -1.1 360,448 + PFR28_00331 0.48 -0.6 360,448 + PFR28_00331 0.48 +0.9 360,448 + PFR28_00331 0.48 -2.0 360,449 - PFR28_00331 0.48 -1.4 360,449 - PFR28_00331 0.48 -2.0 360,449 - PFR28_00331 0.48 -2.5 360,449 - PFR28_00331 0.48 -0.5 360,581 + PFR28_00331 0.63 -3.0 360,595 + PFR28_00331 0.64 -1.1 360,595 + PFR28_00331 0.64 +1.8 360,699 + PFR28_00331 0.76 +0.7 360,828 + -0.5 360,829 - +0.3 360,853 + -0.7 360,853 + -2.2 360,853 + -1.6 360,853 + +2.5 360,853 + +1.3 360,853 + -2.1 360,853 + -0.1 360,853 + +1.6 360,853 + -2.0 360,853 + +0.0 360,853 + -1.3 360,853 + +0.2 360,853 + -1.3 360,853 + -0.8 360,854 - -1.0 360,854 - -0.6 360,854 - -1.3 360,854 - -0.7 360,854 - +0.2 360,854 - -0.7 360,854 - +0.0 360,991 + -0.2 360,991 + -0.8 360,991 + -0.5 360,991 + -0.6 360,991 + -0.7 360,991 + -1.0 360,991 + -0.5 360,991 + -0.8 360,992 - -0.2 360,992 - -1.1 360,992 - -0.8 360,992 - -0.2 360,992 - +0.8 360,992 - +1.5 360,992 - -1.3 360,992 - -0.2 360,992 - +0.2 360,998 + -1.0 360,999 - -1.5 360,999 - -0.8 360,999 - -1.4 361,168 + PFR28_00332 0.11 -0.3 361,244 + PFR28_00332 0.22 -0.1 361,244 + PFR28_00332 0.22 +0.3 361,277 + PFR28_00332 0.26 -1.2 361,278 - PFR28_00332 0.26 -1.0 361,298 + PFR28_00332 0.29 +0.4 361,298 + PFR28_00332 0.29 -0.1 361,298 + PFR28_00332 0.29 -0.2 361,298 + PFR28_00332 0.29 -0.2 361,298 + PFR28_00332 0.29 -0.1 361,298 + PFR28_00332 0.29 +0.6 361,298 + PFR28_00332 0.29 -0.3 361,299 - PFR28_00332 0.29 -0.8 361,299 - PFR28_00332 0.29 -2.0 361,421 + PFR28_00332 0.46 -0.3 361,481 + PFR28_00332 0.54 -0.7 361,482 - PFR28_00332 0.54 +0.5 361,541 + PFR28_00332 0.62 +0.2 361,541 + PFR28_00332 0.62 +0.3 361,541 + PFR28_00332 0.62 -0.6 361,542 - PFR28_00332 0.62 -0.7 361,542 - PFR28_00332 0.62 -0.6 361,542 - PFR28_00332 0.62 -0.3 361,542 - PFR28_00332 0.62 -0.7 361,542 - PFR28_00332 0.62 -1.5 361,542 - PFR28_00332 0.62 -0.5 361,713 + PFR28_00332 0.86 -0.7 361,713 + PFR28_00332 0.86 -0.3 361,713 + PFR28_00332 0.86 -0.1 361,713 + PFR28_00332 0.86 -0.2 361,713 + PFR28_00332 0.86 -0.6 361,714 - PFR28_00332 0.86 -1.3 361,714 - PFR28_00332 0.86 -0.7 361,727 - PFR28_00332 0.88 -0.8 361,758 + -0.5 361,769 + +0.1 361,769 + -0.8 361,889 + +0.5
Or see this region's nucleotide sequence