Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00324 and PFR28_00325 are separated by 12 nucleotides PFR28_00325 and PFR28_00326 are separated by 203 nucleotides
PFR28_00324: PFR28_00324 - hypothetical protein, at 354,095 to 355,309
_00324
PFR28_00325: PFR28_00325 - Inner membrane protein YpjD, at 355,322 to 356,134
_00325
PFR28_00326: PFR28_00326 - Signal recognition particle protein, at 356,338 to 357,714
_00326
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.413 kb on + strand, within PFR28_00324 at 354.413 kb on + strand, within PFR28_00324 at 354.413 kb on + strand, within PFR28_00324 at 354.510 kb on + strand, within PFR28_00324 at 354.510 kb on + strand, within PFR28_00324 at 354.510 kb on + strand, within PFR28_00324 at 354.510 kb on + strand, within PFR28_00324 at 354.510 kb on + strand, within PFR28_00324 at 354.511 kb on - strand, within PFR28_00324 at 354.511 kb on - strand, within PFR28_00324 at 354.511 kb on - strand, within PFR28_00324 at 354.511 kb on - strand, within PFR28_00324 at 354.533 kb on + strand, within PFR28_00324 at 354.534 kb on - strand, within PFR28_00324 at 354.534 kb on - strand, within PFR28_00324 at 354.534 kb on - strand, within PFR28_00324 at 354.613 kb on + strand, within PFR28_00324 at 354.881 kb on + strand, within PFR28_00324 at 354.881 kb on + strand, within PFR28_00324 at 354.882 kb on - strand, within PFR28_00324 at 354.882 kb on - strand, within PFR28_00324 at 354.882 kb on - strand, within PFR28_00324 at 354.918 kb on + strand, within PFR28_00324 at 355.006 kb on - strand, within PFR28_00324 at 355.006 kb on - strand, within PFR28_00324 at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.232 kb on + strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.233 kb on - strand at 355.274 kb on + strand at 355.303 kb on + strand at 355.303 kb on + strand at 355.304 kb on - strand at 355.304 kb on - strand at 355.304 kb on - strand at 355.327 kb on + strand at 355.327 kb on + strand at 355.327 kb on + strand at 355.327 kb on + strand at 355.328 kb on - strand at 355.328 kb on - strand at 355.338 kb on + strand at 355.338 kb on + strand at 355.339 kb on - strand at 355.365 kb on + strand at 355.414 kb on + strand, within PFR28_00325 at 355.415 kb on - strand, within PFR28_00325 at 355.968 kb on + strand, within PFR28_00325 at 355.968 kb on + strand, within PFR28_00325 at 355.968 kb on + strand, within PFR28_00325 at 355.969 kb on - strand, within PFR28_00325 at 355.969 kb on - strand, within PFR28_00325 at 356.065 kb on - strand at 356.083 kb on - strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.134 kb on + strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.135 kb on - strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.175 kb on + strand at 356.176 kb on - strand at 356.176 kb on - strand at 356.176 kb on - strand at 356.176 kb on - strand at 356.176 kb on - strand at 356.176 kb on - strand at 356.189 kb on + strand at 356.190 kb on - strand at 356.190 kb on - strand at 356.217 kb on + strand at 356.217 kb on + strand at 356.237 kb on + strand at 356.237 kb on + strand at 356.237 kb on + strand at 356.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 354,413 + PFR28_00324 0.26 -0.4 354,413 + PFR28_00324 0.26 +0.5 354,413 + PFR28_00324 0.26 +0.2 354,510 + PFR28_00324 0.34 +2.6 354,510 + PFR28_00324 0.34 -0.5 354,510 + PFR28_00324 0.34 +0.5 354,510 + PFR28_00324 0.34 -0.6 354,510 + PFR28_00324 0.34 +0.9 354,511 - PFR28_00324 0.34 +0.2 354,511 - PFR28_00324 0.34 -0.1 354,511 - PFR28_00324 0.34 +0.8 354,511 - PFR28_00324 0.34 +0.6 354,533 + PFR28_00324 0.36 +0.1 354,534 - PFR28_00324 0.36 -0.1 354,534 - PFR28_00324 0.36 +0.5 354,534 - PFR28_00324 0.36 -1.0 354,613 + PFR28_00324 0.43 -0.0 354,881 + PFR28_00324 0.65 +1.0 354,881 + PFR28_00324 0.65 -0.2 354,882 - PFR28_00324 0.65 +0.5 354,882 - PFR28_00324 0.65 +0.3 354,882 - PFR28_00324 0.65 +0.8 354,918 + PFR28_00324 0.68 +0.1 355,006 - PFR28_00324 0.75 +0.3 355,006 - PFR28_00324 0.75 -0.7 355,232 + +0.4 355,232 + -0.8 355,232 + -0.3 355,232 + +0.0 355,232 + +1.3 355,232 + -0.4 355,232 + -1.7 355,232 + -0.8 355,233 - +0.5 355,233 - +0.6 355,233 - +0.8 355,233 - +0.1 355,233 - -0.7 355,233 - +0.6 355,233 - -0.4 355,233 - +0.0 355,274 + -0.0 355,303 + +0.5 355,303 + -0.3 355,304 - +1.2 355,304 - +0.5 355,304 - +0.9 355,327 + -0.7 355,327 + -0.7 355,327 + -1.0 355,327 + -2.4 355,328 - -0.4 355,328 - -1.2 355,338 + +0.2 355,338 + -0.8 355,339 - -1.7 355,365 + -0.8 355,414 + PFR28_00325 0.11 -0.8 355,415 - PFR28_00325 0.11 -1.4 355,968 + PFR28_00325 0.79 -2.7 355,968 + PFR28_00325 0.79 -0.4 355,968 + PFR28_00325 0.79 -1.3 355,969 - PFR28_00325 0.80 -1.3 355,969 - PFR28_00325 0.80 -2.0 356,065 - +0.2 356,083 - -0.4 356,134 + -0.3 356,134 + -1.5 356,134 + -1.6 356,134 + -1.6 356,134 + -1.5 356,134 + -1.5 356,134 + +0.2 356,134 + -0.8 356,134 + -3.0 356,134 + -1.7 356,134 + +0.3 356,134 + -1.5 356,134 + -2.5 356,134 + -0.4 356,134 + -1.0 356,135 - -0.8 356,135 - -1.3 356,135 - -0.9 356,135 - -1.0 356,135 - -0.6 356,135 - -1.6 356,135 - -1.0 356,135 - -1.2 356,175 + -1.0 356,175 + +0.1 356,175 + -1.2 356,175 + -1.6 356,175 + -1.0 356,175 + -2.2 356,175 + -1.3 356,175 + -0.5 356,176 - -2.0 356,176 - +0.2 356,176 - -1.4 356,176 - -0.3 356,176 - -3.4 356,176 - -2.7 356,189 + -1.4 356,190 - -1.7 356,190 - -0.6 356,217 + +0.5 356,217 + -0.1 356,237 + +0.5 356,237 + +0.8 356,237 + -1.3 356,239 + -0.4
Or see this region's nucleotide sequence