Strain Fitness in Pseudomonas sp. RS175 around PFR28_00299

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00298 and PFR28_00299 are separated by 40 nucleotidesPFR28_00299 and PFR28_00300 are separated by 1 nucleotides PFR28_00298: PFR28_00298 - Histidine--tRNA ligase, at 324,962 to 326,251 _00298 PFR28_00299: PFR28_00299 - hypothetical protein, at 326,292 to 326,933 _00299 PFR28_00300: PFR28_00300 - Outer membrane protein assembly factor BamB, at 326,935 to 328,077 _00300 Position (kb) 326 327Strain fitness (log2 ratio) -1 0 1at 326.285 kb on + strandat 326.559 kb on + strand, within PFR28_00299at 326.593 kb on + strand, within PFR28_00299at 326.809 kb on + strand, within PFR28_00299

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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326,285 + -0.2
326,559 + PFR28_00299 0.42 +0.8
326,593 + PFR28_00299 0.47 +0.3
326,809 + PFR28_00299 0.81 +0.0

Or see this region's nucleotide sequence