Experiment: sn-glycero-3-phosphocholine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00195 and PFR28_00196 are separated by 0 nucleotides PFR28_00196 and PFR28_00197 are separated by 360 nucleotides PFR28_00197 and PFR28_00198 are separated by 107 nucleotides
PFR28_00195: PFR28_00195 - putative acyltransferase YihG, at 219,874 to 220,782
_00195
PFR28_00196: PFR28_00196 - Phosphate acetyltransferase, at 220,783 to 222,882
_00196
PFR28_00197: PFR28_00197 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD, at 223,243 to 223,728
_00197
PFR28_00198: PFR28_00198 - Thioredoxin/glutathione peroxidase BtuE, at 223,836 to 224,318
_00198
Position (kb) 220
221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 219.969 kb on - strand, within PFR28_00195 at 219.986 kb on + strand, within PFR28_00195 at 219.986 kb on + strand, within PFR28_00195 at 219.987 kb on - strand, within PFR28_00195 at 219.987 kb on - strand, within PFR28_00195 at 220.012 kb on + strand, within PFR28_00195 at 220.106 kb on - strand, within PFR28_00195 at 220.106 kb on - strand, within PFR28_00195 at 220.184 kb on + strand, within PFR28_00195 at 220.466 kb on + strand, within PFR28_00195 at 220.466 kb on + strand, within PFR28_00195 at 220.466 kb on + strand, within PFR28_00195 at 220.466 kb on + strand, within PFR28_00195 at 220.467 kb on - strand, within PFR28_00195 at 220.467 kb on - strand, within PFR28_00195 at 220.467 kb on - strand, within PFR28_00195 at 220.467 kb on - strand, within PFR28_00195 at 220.518 kb on - strand, within PFR28_00195 at 220.529 kb on + strand, within PFR28_00195 at 220.530 kb on - strand, within PFR28_00195 at 220.530 kb on - strand, within PFR28_00195 at 220.784 kb on + strand at 220.784 kb on + strand at 220.784 kb on + strand at 220.784 kb on + strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.785 kb on - strand at 220.788 kb on + strand at 220.788 kb on + strand at 220.789 kb on - strand at 220.789 kb on - strand at 220.789 kb on - strand at 220.835 kb on + strand at 220.836 kb on - strand at 220.836 kb on - strand at 221.057 kb on + strand, within PFR28_00196 at 221.165 kb on + strand, within PFR28_00196 at 221.165 kb on + strand, within PFR28_00196 at 221.165 kb on + strand, within PFR28_00196 at 221.165 kb on + strand, within PFR28_00196 at 221.166 kb on - strand, within PFR28_00196 at 221.166 kb on - strand, within PFR28_00196 at 221.283 kb on - strand, within PFR28_00196 at 221.283 kb on - strand, within PFR28_00196 at 221.534 kb on + strand, within PFR28_00196 at 221.535 kb on - strand, within PFR28_00196 at 221.684 kb on - strand, within PFR28_00196 at 221.684 kb on - strand, within PFR28_00196 at 221.924 kb on + strand, within PFR28_00196 at 221.924 kb on + strand, within PFR28_00196 at 221.924 kb on + strand, within PFR28_00196 at 221.924 kb on + strand, within PFR28_00196 at 221.924 kb on + strand, within PFR28_00196 at 221.925 kb on - strand, within PFR28_00196 at 221.925 kb on - strand, within PFR28_00196 at 221.925 kb on - strand, within PFR28_00196 at 222.110 kb on - strand, within PFR28_00196 at 222.110 kb on - strand, within PFR28_00196 at 222.189 kb on - strand, within PFR28_00196 at 222.457 kb on + strand, within PFR28_00196 at 222.457 kb on + strand, within PFR28_00196 at 222.457 kb on + strand, within PFR28_00196 at 222.458 kb on - strand, within PFR28_00196 at 222.458 kb on - strand, within PFR28_00196 at 222.536 kb on + strand, within PFR28_00196 at 222.536 kb on + strand, within PFR28_00196 at 222.810 kb on + strand at 222.894 kb on - strand at 222.894 kb on - strand at 222.894 kb on - strand at 222.925 kb on + strand at 223.010 kb on + strand at 223.011 kb on - strand at 223.201 kb on - strand at 223.223 kb on + strand at 223.223 kb on + strand at 223.223 kb on + strand at 223.223 kb on + strand at 223.261 kb on - strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.279 kb on + strand at 223.280 kb on - strand at 223.280 kb on - strand at 223.280 kb on - strand at 223.281 kb on + strand at 223.281 kb on + strand at 223.281 kb on + strand at 223.281 kb on + strand at 223.281 kb on + strand at 223.282 kb on - strand at 223.282 kb on - strand at 223.282 kb on - strand at 223.342 kb on + strand, within PFR28_00197 at 223.342 kb on + strand, within PFR28_00197 at 223.343 kb on - strand, within PFR28_00197 at 223.343 kb on - strand, within PFR28_00197 at 223.362 kb on + strand, within PFR28_00197 at 223.363 kb on - strand, within PFR28_00197 at 223.444 kb on + strand, within PFR28_00197 at 223.444 kb on + strand, within PFR28_00197 at 223.453 kb on + strand, within PFR28_00197 at 223.739 kb on - strand at 223.739 kb on - strand at 223.857 kb on - strand at 223.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM remove 219,969 - PFR28_00195 0.10 -0.2 219,986 + PFR28_00195 0.12 +1.2 219,986 + PFR28_00195 0.12 +0.9 219,987 - PFR28_00195 0.12 -0.1 219,987 - PFR28_00195 0.12 -0.2 220,012 + PFR28_00195 0.15 +0.8 220,106 - PFR28_00195 0.26 +2.0 220,106 - PFR28_00195 0.26 -0.9 220,184 + PFR28_00195 0.34 -0.2 220,466 + PFR28_00195 0.65 -0.1 220,466 + PFR28_00195 0.65 -3.2 220,466 + PFR28_00195 0.65 +0.1 220,466 + PFR28_00195 0.65 -2.5 220,467 - PFR28_00195 0.65 +1.5 220,467 - PFR28_00195 0.65 +0.4 220,467 - PFR28_00195 0.65 -0.0 220,467 - PFR28_00195 0.65 -1.4 220,518 - PFR28_00195 0.71 +0.4 220,529 + PFR28_00195 0.72 -0.8 220,530 - PFR28_00195 0.72 +0.9 220,530 - PFR28_00195 0.72 +0.6 220,784 + +0.0 220,784 + -0.5 220,784 + +0.9 220,784 + -0.6 220,785 - +1.5 220,785 - +0.5 220,785 - -1.1 220,785 - -0.6 220,785 - -1.2 220,785 - -0.5 220,785 - +1.0 220,785 - -0.4 220,785 - -1.7 220,785 - -0.0 220,785 - -0.1 220,788 + -0.3 220,788 + -0.8 220,789 - -0.0 220,789 - -0.6 220,789 - -0.5 220,835 + -0.1 220,836 - -2.1 220,836 - +1.5 221,057 + PFR28_00196 0.13 -1.0 221,165 + PFR28_00196 0.18 -1.1 221,165 + PFR28_00196 0.18 -1.9 221,165 + PFR28_00196 0.18 -0.1 221,165 + PFR28_00196 0.18 -1.5 221,166 - PFR28_00196 0.18 -1.9 221,166 - PFR28_00196 0.18 -1.1 221,283 - PFR28_00196 0.24 -0.9 221,283 - PFR28_00196 0.24 -0.6 221,534 + PFR28_00196 0.36 +1.2 221,535 - PFR28_00196 0.36 -0.3 221,684 - PFR28_00196 0.43 +0.5 221,684 - PFR28_00196 0.43 +0.2 221,924 + PFR28_00196 0.54 +0.9 221,924 + PFR28_00196 0.54 -1.8 221,924 + PFR28_00196 0.54 +0.5 221,924 + PFR28_00196 0.54 -0.4 221,924 + PFR28_00196 0.54 -2.9 221,925 - PFR28_00196 0.54 -0.8 221,925 - PFR28_00196 0.54 -1.8 221,925 - PFR28_00196 0.54 -0.7 222,110 - PFR28_00196 0.63 -0.9 222,110 - PFR28_00196 0.63 -1.4 222,189 - PFR28_00196 0.67 -1.1 222,457 + PFR28_00196 0.80 -0.7 222,457 + PFR28_00196 0.80 -1.1 222,457 + PFR28_00196 0.80 -0.1 222,458 - PFR28_00196 0.80 -2.7 222,458 - PFR28_00196 0.80 -0.1 222,536 + PFR28_00196 0.83 -0.1 222,536 + PFR28_00196 0.83 -0.9 222,810 + -1.5 222,894 - +0.7 222,894 - +0.0 222,894 - +0.3 222,925 + +0.1 223,010 + +0.9 223,011 - -0.3 223,201 - +1.4 223,223 + -0.8 223,223 + +0.3 223,223 + +0.3 223,223 + +0.5 223,261 - -0.3 223,279 + -0.4 223,279 + +0.3 223,279 + +0.6 223,279 + +0.7 223,279 + +0.1 223,279 + +0.9 223,279 + -1.5 223,280 - +2.2 223,280 - +0.5 223,280 - -0.5 223,281 + +0.3 223,281 + +0.4 223,281 + -1.1 223,281 + -0.9 223,281 + +1.0 223,282 - -1.9 223,282 - -0.2 223,282 - -0.5 223,342 + PFR28_00197 0.20 +0.7 223,342 + PFR28_00197 0.20 +1.3 223,343 - PFR28_00197 0.21 -0.4 223,343 - PFR28_00197 0.21 -0.1 223,362 + PFR28_00197 0.24 -0.5 223,363 - PFR28_00197 0.25 +0.2 223,444 + PFR28_00197 0.41 +0.3 223,444 + PFR28_00197 0.41 -0.0 223,453 + PFR28_00197 0.43 +0.3 223,739 - -1.2 223,739 - -0.4 223,857 - +0.2 223,857 - +0.2
Or see this region's nucleotide sequence