Strain Fitness in Pseudomonas sp. RS175 around PFR28_00162

Experiment: sn-glycero-3-phosphocholine (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00161 and PFR28_00162 are separated by 44 nucleotidesPFR28_00162 and PFR28_00163 are separated by 152 nucleotides PFR28_00161: PFR28_00161 - Metalloprotease TldD, at 188,366 to 189,808 _00161 PFR28_00162: PFR28_00162 - hypothetical protein, at 189,853 to 190,377 _00162 PFR28_00163: PFR28_00163 - Metalloprotease PmbA, at 190,530 to 191,876 _00163 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 188.907 kb on + strand, within PFR28_00161at 188.908 kb on - strand, within PFR28_00161at 188.992 kb on + strand, within PFR28_00161at 188.992 kb on + strand, within PFR28_00161at 188.993 kb on - strand, within PFR28_00161at 189.005 kb on + strand, within PFR28_00161at 189.006 kb on - strand, within PFR28_00161at 189.006 kb on - strand, within PFR28_00161at 189.200 kb on + strand, within PFR28_00161at 189.201 kb on - strand, within PFR28_00161at 189.201 kb on - strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.353 kb on + strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.354 kb on - strand, within PFR28_00161at 189.422 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.458 kb on + strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.459 kb on - strand, within PFR28_00161at 189.518 kb on + strand, within PFR28_00161at 189.518 kb on + strand, within PFR28_00161at 189.519 kb on - strand, within PFR28_00161at 189.519 kb on - strand, within PFR28_00161at 189.519 kb on - strand, within PFR28_00161at 189.546 kb on + strand, within PFR28_00161at 189.546 kb on + strand, within PFR28_00161at 189.546 kb on + strand, within PFR28_00161at 189.546 kb on + strand, within PFR28_00161at 189.547 kb on - strand, within PFR28_00161at 189.547 kb on - strand, within PFR28_00161at 189.590 kb on + strand, within PFR28_00161at 189.591 kb on - strand, within PFR28_00161at 189.715 kb on + strandat 189.715 kb on + strandat 189.715 kb on + strandat 189.715 kb on + strandat 189.716 kb on - strandat 189.716 kb on - strandat 189.716 kb on - strandat 189.716 kb on - strandat 189.785 kb on - strandat 189.893 kb on + strandat 189.893 kb on + strandat 189.893 kb on + strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.894 kb on - strandat 189.906 kb on + strand, within PFR28_00162at 189.906 kb on + strand, within PFR28_00162at 189.907 kb on - strand, within PFR28_00162at 190.082 kb on + strand, within PFR28_00162at 190.082 kb on + strand, within PFR28_00162at 190.082 kb on + strand, within PFR28_00162at 190.082 kb on + strand, within PFR28_00162at 190.082 kb on + strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.083 kb on - strand, within PFR28_00162at 190.349 kb on + strandat 190.349 kb on + strandat 190.409 kb on + strandat 190.410 kb on - strandat 190.463 kb on - strandat 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.734 kb on + strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 190.735 kb on - strand, within PFR28_00163at 191.003 kb on + strand, within PFR28_00163at 191.067 kb on + strand, within PFR28_00163at 191.068 kb on - strand, within PFR28_00163at 191.136 kb on + strand, within PFR28_00163at 191.137 kb on - strand, within PFR28_00163at 191.137 kb on - strand, within PFR28_00163at 191.142 kb on + strand, within PFR28_00163

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Per-strain Table

Position Strand Gene LocusTag Fraction sn-glycero-3-phosphocholine (C) 10 mM
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188,907 + PFR28_00161 0.37 +0.2
188,908 - PFR28_00161 0.38 -0.2
188,992 + PFR28_00161 0.43 +0.0
188,992 + PFR28_00161 0.43 +0.5
188,993 - PFR28_00161 0.43 +0.0
189,005 + PFR28_00161 0.44 +0.0
189,006 - PFR28_00161 0.44 -0.5
189,006 - PFR28_00161 0.44 -0.2
189,200 + PFR28_00161 0.58 +0.0
189,201 - PFR28_00161 0.58 +0.5
189,201 - PFR28_00161 0.58 +0.1
189,353 + PFR28_00161 0.68 -0.7
189,353 + PFR28_00161 0.68 -0.7
189,353 + PFR28_00161 0.68 +0.1
189,353 + PFR28_00161 0.68 +0.1
189,353 + PFR28_00161 0.68 -1.3
189,353 + PFR28_00161 0.68 -1.4
189,353 + PFR28_00161 0.68 -0.0
189,354 - PFR28_00161 0.68 -0.2
189,354 - PFR28_00161 0.68 +1.0
189,354 - PFR28_00161 0.68 -1.6
189,354 - PFR28_00161 0.68 +0.5
189,354 - PFR28_00161 0.68 -0.9
189,354 - PFR28_00161 0.68 -0.4
189,354 - PFR28_00161 0.68 -1.7
189,422 + PFR28_00161 0.73 +0.5
189,458 + PFR28_00161 0.76 +0.1
189,458 + PFR28_00161 0.76 +1.0
189,458 + PFR28_00161 0.76 -0.4
189,458 + PFR28_00161 0.76 -0.7
189,458 + PFR28_00161 0.76 -0.1
189,458 + PFR28_00161 0.76 -0.5
189,458 + PFR28_00161 0.76 -0.5
189,458 + PFR28_00161 0.76 +0.0
189,458 + PFR28_00161 0.76 +0.2
189,458 + PFR28_00161 0.76 -2.7
189,458 + PFR28_00161 0.76 -0.5
189,458 + PFR28_00161 0.76 -2.4
189,458 + PFR28_00161 0.76 -0.3
189,459 - PFR28_00161 0.76 -1.0
189,459 - PFR28_00161 0.76 +1.3
189,459 - PFR28_00161 0.76 -0.3
189,459 - PFR28_00161 0.76 +0.8
189,459 - PFR28_00161 0.76 -0.4
189,459 - PFR28_00161 0.76 -0.7
189,459 - PFR28_00161 0.76 +0.4
189,459 - PFR28_00161 0.76 +0.0
189,459 - PFR28_00161 0.76 -2.2
189,459 - PFR28_00161 0.76 +0.9
189,459 - PFR28_00161 0.76 -0.1
189,459 - PFR28_00161 0.76 -1.4
189,459 - PFR28_00161 0.76 -0.9
189,459 - PFR28_00161 0.76 -0.5
189,459 - PFR28_00161 0.76 +0.0
189,459 - PFR28_00161 0.76 -1.2
189,459 - PFR28_00161 0.76 +0.7
189,459 - PFR28_00161 0.76 -1.0
189,518 + PFR28_00161 0.80 -1.5
189,518 + PFR28_00161 0.80 -0.8
189,519 - PFR28_00161 0.80 -1.1
189,519 - PFR28_00161 0.80 +0.7
189,519 - PFR28_00161 0.80 +0.5
189,546 + PFR28_00161 0.82 -0.4
189,546 + PFR28_00161 0.82 +1.6
189,546 + PFR28_00161 0.82 -0.4
189,546 + PFR28_00161 0.82 -0.7
189,547 - PFR28_00161 0.82 +0.9
189,547 - PFR28_00161 0.82 +0.0
189,590 + PFR28_00161 0.85 -2.5
189,591 - PFR28_00161 0.85 -0.9
189,715 + +0.5
189,715 + +0.5
189,715 + -0.6
189,715 + +1.5
189,716 - +0.3
189,716 - -1.0
189,716 - -0.9
189,716 - -1.0
189,785 - +0.7
189,893 + +0.6
189,893 + +1.0
189,893 + -0.5
189,894 - +1.7
189,894 - -1.6
189,894 - -2.2
189,894 - +0.0
189,894 - -0.2
189,894 - -1.2
189,894 - -0.3
189,894 - -0.5
189,894 - +1.6
189,894 - -1.9
189,906 + PFR28_00162 0.10 +0.5
189,906 + PFR28_00162 0.10 +0.7
189,907 - PFR28_00162 0.10 +0.5
190,082 + PFR28_00162 0.44 +0.2
190,082 + PFR28_00162 0.44 +0.7
190,082 + PFR28_00162 0.44 +0.4
190,082 + PFR28_00162 0.44 +0.7
190,082 + PFR28_00162 0.44 -0.1
190,083 - PFR28_00162 0.44 -0.2
190,083 - PFR28_00162 0.44 +1.2
190,083 - PFR28_00162 0.44 -0.3
190,083 - PFR28_00162 0.44 +0.3
190,083 - PFR28_00162 0.44 +0.1
190,083 - PFR28_00162 0.44 +0.3
190,349 + +1.8
190,349 + +0.2
190,409 + +0.1
190,410 - +0.0
190,463 - -0.3
190,734 + PFR28_00163 0.15 -0.1
190,734 + PFR28_00163 0.15 -0.7
190,734 + PFR28_00163 0.15 +0.2
190,734 + PFR28_00163 0.15 -1.5
190,734 + PFR28_00163 0.15 +0.9
190,734 + PFR28_00163 0.15 +0.1
190,734 + PFR28_00163 0.15 -0.1
190,734 + PFR28_00163 0.15 +1.2
190,734 + PFR28_00163 0.15 -0.4
190,734 + PFR28_00163 0.15 -2.4
190,734 + PFR28_00163 0.15 -0.2
190,734 + PFR28_00163 0.15 -0.6
190,735 - PFR28_00163 0.15 -0.6
190,735 - PFR28_00163 0.15 -0.3
190,735 - PFR28_00163 0.15 -2.4
190,735 - PFR28_00163 0.15 +1.2
190,735 - PFR28_00163 0.15 +0.0
190,735 - PFR28_00163 0.15 -0.4
190,735 - PFR28_00163 0.15 -0.3
191,003 + PFR28_00163 0.35 -1.1
191,067 + PFR28_00163 0.40 +0.2
191,068 - PFR28_00163 0.40 +0.7
191,136 + PFR28_00163 0.45 +0.5
191,137 - PFR28_00163 0.45 +2.0
191,137 - PFR28_00163 0.45 +1.5
191,142 + PFR28_00163 0.45 -0.0

Or see this region's nucleotide sequence