Experiment: gluconate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3479 and Atu3480 are separated by 1 nucleotides Atu3480 and Atu3481 overlap by 11 nucleotides Atu3481 and Atu3482 are separated by 140 nucleotides
Atu3479: Atu3479 - 3-methylcrotonyl-CoA carboxylase subunit alpha, at 527,314 to 529,305
Atu3479
Atu3480: Atu3480 - hydroxymethylglutaryl-CoA lyase, at 529,307 to 530,233
Atu3480
Atu3481: Atu3481 - enoyl-CoA hydratase, at 530,223 to 530,999
Atu3481
Atu3482: Atu3482 - pantoate--beta-alanine ligase, at 531,140 to 532,018
Atu3482
Position (kb) 529
530
531 Strain fitness (log2 ratio) -1
0
1 at 528.490 kb on + strand, within Atu3479 at 528.707 kb on + strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.840 kb on - strand, within Atu3479 at 528.859 kb on - strand, within Atu3479 at 528.871 kb on + strand, within Atu3479 at 528.949 kb on - strand, within Atu3479 at 528.970 kb on + strand, within Atu3479 at 528.976 kb on + strand, within Atu3479 at 529.088 kb on + strand, within Atu3479 at 529.268 kb on + strand at 529.276 kb on - strand at 529.447 kb on - strand, within Atu3480 at 529.447 kb on - strand, within Atu3480 at 529.518 kb on - strand, within Atu3480 at 529.530 kb on - strand, within Atu3480 at 529.672 kb on - strand, within Atu3480 at 529.693 kb on + strand, within Atu3480 at 529.816 kb on - strand, within Atu3480 at 529.877 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.938 kb on + strand, within Atu3480 at 529.982 kb on + strand, within Atu3480 at 530.036 kb on - strand, within Atu3480 at 530.206 kb on + strand at 530.493 kb on + strand, within Atu3481 at 530.520 kb on + strand, within Atu3481 at 530.533 kb on + strand, within Atu3481 at 530.703 kb on - strand, within Atu3481 at 530.737 kb on + strand, within Atu3481 at 530.786 kb on + strand, within Atu3481 at 530.993 kb on + strand at 531.060 kb on - strand at 531.092 kb on + strand at 531.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction gluconate (C) remove 528,490 + Atu3479 0.59 -0.4 528,707 + Atu3479 0.70 -0.2 528,840 - Atu3479 0.77 -0.0 528,840 - Atu3479 0.77 +0.6 528,859 - Atu3479 0.78 +0.0 528,871 + Atu3479 0.78 -0.4 528,949 - Atu3479 0.82 -0.8 528,970 + Atu3479 0.83 +1.2 528,976 + Atu3479 0.83 +0.3 529,088 + Atu3479 0.89 -0.2 529,268 + -1.0 529,276 - +0.6 529,447 - Atu3480 0.15 +0.2 529,447 - Atu3480 0.15 +0.0 529,518 - Atu3480 0.23 -0.0 529,530 - Atu3480 0.24 +0.1 529,672 - Atu3480 0.39 +0.0 529,693 + Atu3480 0.42 +0.2 529,816 - Atu3480 0.55 +0.1 529,877 + Atu3480 0.61 -0.6 529,938 + Atu3480 0.68 +0.7 529,938 + Atu3480 0.68 +0.6 529,982 + Atu3480 0.73 -0.0 530,036 - Atu3480 0.79 +0.9 530,206 + -0.2 530,493 + Atu3481 0.35 -1.2 530,520 + Atu3481 0.38 -0.3 530,533 + Atu3481 0.40 +0.3 530,703 - Atu3481 0.62 +0.3 530,737 + Atu3481 0.66 -0.5 530,786 + Atu3481 0.72 +0.0 530,993 + -0.0 531,060 - +0.3 531,092 + +0.0 531,223 + -1.6
Or see this region's nucleotide sequence