Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4093

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4091 and Echvi_4092 are separated by 12 nucleotidesEchvi_4092 and Echvi_4093 are separated by 6 nucleotidesEchvi_4093 and Echvi_4094 overlap by 20 nucleotidesEchvi_4094 and Echvi_4095 are separated by 5 nucleotidesEchvi_4095 and Echvi_4096 are separated by 3 nucleotides Echvi_4091: Echvi_4091 - hypothetical protein, at 4,909,977 to 4,910,714 _4091 Echvi_4092: Echvi_4092 - hypothetical protein, at 4,910,727 to 4,911,584 _4092 Echvi_4093: Echvi_4093 - Bacteroides conjugative transposon TraM protein, at 4,911,591 to 4,912,769 _4093 Echvi_4094: Echvi_4094 - hypothetical protein, at 4,912,750 to 4,913,049 _4094 Echvi_4095: Echvi_4095 - Bacteroides conjugative transposon TraK protein, at 4,913,055 to 4,913,672 _4095 Echvi_4096: Echvi_4096 - Bacteroides conjugative transposon TraJ protein, at 4,913,676 to 4,914,695 _4096 Position (kb) 4911 4912 4913Strain fitness (log2 ratio) -2 -1 0 1 2at 4910.672 kb on - strandat 4910.689 kb on - strandat 4910.728 kb on + strandat 4910.728 kb on + strandat 4910.729 kb on - strandat 4910.779 kb on - strandat 4910.931 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.186 kb on + strand, within Echvi_4092at 4911.187 kb on - strand, within Echvi_4092at 4911.189 kb on - strand, within Echvi_4092at 4911.232 kb on - strand, within Echvi_4092at 4911.236 kb on + strand, within Echvi_4092at 4911.251 kb on + strand, within Echvi_4092at 4911.268 kb on + strand, within Echvi_4092at 4911.269 kb on - strand, within Echvi_4092at 4911.356 kb on + strand, within Echvi_4092at 4911.479 kb on - strand, within Echvi_4092at 4911.503 kb on + strandat 4911.503 kb on + strandat 4911.505 kb on + strandat 4911.505 kb on + strandat 4911.506 kb on - strandat 4911.506 kb on - strandat 4911.506 kb on - strandat 4911.506 kb on - strandat 4911.506 kb on - strandat 4911.547 kb on - strandat 4911.631 kb on - strandat 4911.747 kb on + strand, within Echvi_4093at 4911.747 kb on + strand, within Echvi_4093at 4911.748 kb on - strand, within Echvi_4093at 4911.871 kb on - strand, within Echvi_4093at 4911.939 kb on + strand, within Echvi_4093at 4912.022 kb on - strand, within Echvi_4093at 4912.088 kb on - strand, within Echvi_4093at 4912.227 kb on + strand, within Echvi_4093at 4912.497 kb on + strand, within Echvi_4093at 4912.610 kb on + strand, within Echvi_4093at 4912.647 kb on + strand, within Echvi_4093at 4912.801 kb on - strand, within Echvi_4094at 4912.964 kb on + strand, within Echvi_4094at 4912.965 kb on - strand, within Echvi_4094at 4912.965 kb on - strand, within Echvi_4094at 4913.222 kb on - strand, within Echvi_4095at 4913.240 kb on - strand, within Echvi_4095at 4913.259 kb on + strand, within Echvi_4095at 4913.260 kb on - strand, within Echvi_4095at 4913.338 kb on + strand, within Echvi_4095at 4913.506 kb on - strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.528 kb on - strand, within Echvi_4095at 4913.528 kb on - strand, within Echvi_4095at 4913.529 kb on + strand, within Echvi_4095at 4913.530 kb on - strand, within Echvi_4095at 4913.629 kb on - strandat 4913.629 kb on - strandat 4913.629 kb on - strandat 4913.652 kb on - strandat 4913.677 kb on + strandat 4913.677 kb on + strandat 4913.678 kb on - strandat 4913.679 kb on + strandat 4913.736 kb on + strandat 4913.736 kb on + strandat 4913.736 kb on + strandat 4913.737 kb on - strandat 4913.738 kb on + strandat 4913.757 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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4,910,672 - +0.6
4,910,689 - -0.2
4,910,728 + -2.2
4,910,728 + -0.0
4,910,729 - -0.9
4,910,779 - -0.6
4,910,931 + Echvi_4092 0.24 -0.0
4,911,186 + Echvi_4092 0.53 -0.0
4,911,186 + Echvi_4092 0.53 -1.2
4,911,186 + Echvi_4092 0.53 -0.2
4,911,186 + Echvi_4092 0.53 +1.2
4,911,186 + Echvi_4092 0.53 +0.4
4,911,186 + Echvi_4092 0.53 -0.2
4,911,187 - Echvi_4092 0.54 +0.3
4,911,189 - Echvi_4092 0.54 +0.6
4,911,232 - Echvi_4092 0.59 -0.2
4,911,236 + Echvi_4092 0.59 +0.3
4,911,251 + Echvi_4092 0.61 -1.8
4,911,268 + Echvi_4092 0.63 -0.3
4,911,269 - Echvi_4092 0.63 +0.4
4,911,356 + Echvi_4092 0.73 +0.0
4,911,479 - Echvi_4092 0.88 -0.0
4,911,503 + +0.7
4,911,503 + +0.6
4,911,505 + -1.3
4,911,505 + +0.1
4,911,506 - +0.3
4,911,506 - +0.1
4,911,506 - +0.6
4,911,506 - -0.7
4,911,506 - +0.0
4,911,547 - -0.4
4,911,631 - +0.4
4,911,747 + Echvi_4093 0.13 -2.7
4,911,747 + Echvi_4093 0.13 +0.1
4,911,748 - Echvi_4093 0.13 -0.5
4,911,871 - Echvi_4093 0.24 -0.3
4,911,939 + Echvi_4093 0.30 -1.0
4,912,022 - Echvi_4093 0.37 -0.7
4,912,088 - Echvi_4093 0.42 -1.0
4,912,227 + Echvi_4093 0.54 -1.0
4,912,497 + Echvi_4093 0.77 -0.2
4,912,610 + Echvi_4093 0.86 +0.4
4,912,647 + Echvi_4093 0.90 -1.0
4,912,801 - Echvi_4094 0.17 +0.5
4,912,964 + Echvi_4094 0.71 -0.7
4,912,965 - Echvi_4094 0.72 -1.0
4,912,965 - Echvi_4094 0.72 +0.2
4,913,222 - Echvi_4095 0.27 +0.2
4,913,240 - Echvi_4095 0.30 -0.6
4,913,259 + Echvi_4095 0.33 -1.0
4,913,260 - Echvi_4095 0.33 -0.6
4,913,338 + Echvi_4095 0.46 +0.2
4,913,506 - Echvi_4095 0.73 +0.4
4,913,525 + Echvi_4095 0.76 -0.8
4,913,525 + Echvi_4095 0.76 +0.5
4,913,525 + Echvi_4095 0.76 +0.8
4,913,525 + Echvi_4095 0.76 -0.6
4,913,526 - Echvi_4095 0.76 +1.3
4,913,526 - Echvi_4095 0.76 -0.8
4,913,526 - Echvi_4095 0.76 +0.6
4,913,528 - Echvi_4095 0.77 -0.5
4,913,528 - Echvi_4095 0.77 -0.0
4,913,529 + Echvi_4095 0.77 +0.1
4,913,530 - Echvi_4095 0.77 -2.0
4,913,629 - +0.3
4,913,629 - +0.5
4,913,629 - -0.4
4,913,652 - +0.1
4,913,677 + -1.7
4,913,677 + -0.6
4,913,678 - +0.8
4,913,679 + -0.4
4,913,736 + -1.2
4,913,736 + +2.2
4,913,736 + -0.8
4,913,737 - +0.5
4,913,738 + +1.6
4,913,757 + -1.0

Or see this region's nucleotide sequence