Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3950

Experiment: m.b. Aluminum chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3949 and Echvi_3950 are separated by 169 nucleotidesEchvi_3950 and Echvi_3951 are separated by 144 nucleotides Echvi_3949: Echvi_3949 - polyphosphate:nucleotide phosphotransferase, PPK2 family, at 4,733,222 to 4,734,100 _3949 Echvi_3950: Echvi_3950 - Glycine/D-amino acid oxidases (deaminating), at 4,734,270 to 4,735,520 _3950 Echvi_3951: Echvi_3951 - Proline racemase, at 4,735,665 to 4,736,663 _3951 Position (kb) 4734 4735 4736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4733.280 kb on - strandat 4733.290 kb on - strandat 4733.322 kb on + strand, within Echvi_3949at 4733.322 kb on + strand, within Echvi_3949at 4733.322 kb on + strand, within Echvi_3949at 4733.323 kb on - strand, within Echvi_3949at 4733.323 kb on - strand, within Echvi_3949at 4733.323 kb on - strand, within Echvi_3949at 4733.326 kb on + strand, within Echvi_3949at 4733.327 kb on - strand, within Echvi_3949at 4733.327 kb on - strand, within Echvi_3949at 4733.377 kb on + strand, within Echvi_3949at 4733.379 kb on + strand, within Echvi_3949at 4733.379 kb on + strand, within Echvi_3949at 4733.379 kb on + strand, within Echvi_3949at 4733.379 kb on + strand, within Echvi_3949at 4733.380 kb on - strand, within Echvi_3949at 4733.404 kb on + strand, within Echvi_3949at 4733.408 kb on - strand, within Echvi_3949at 4733.425 kb on - strand, within Echvi_3949at 4733.428 kb on - strand, within Echvi_3949at 4733.436 kb on + strand, within Echvi_3949at 4733.437 kb on - strand, within Echvi_3949at 4733.521 kb on + strand, within Echvi_3949at 4733.641 kb on + strand, within Echvi_3949at 4733.660 kb on + strand, within Echvi_3949at 4733.660 kb on + strand, within Echvi_3949at 4733.688 kb on + strand, within Echvi_3949at 4733.688 kb on + strand, within Echvi_3949at 4733.688 kb on + strand, within Echvi_3949at 4733.689 kb on - strand, within Echvi_3949at 4733.715 kb on - strand, within Echvi_3949at 4733.737 kb on + strand, within Echvi_3949at 4733.771 kb on + strand, within Echvi_3949at 4733.771 kb on + strand, within Echvi_3949at 4733.771 kb on + strand, within Echvi_3949at 4733.772 kb on - strand, within Echvi_3949at 4733.772 kb on - strand, within Echvi_3949at 4733.772 kb on - strand, within Echvi_3949at 4733.773 kb on + strand, within Echvi_3949at 4733.775 kb on + strand, within Echvi_3949at 4733.775 kb on + strand, within Echvi_3949at 4733.775 kb on + strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.776 kb on - strand, within Echvi_3949at 4733.791 kb on - strand, within Echvi_3949at 4733.810 kb on - strand, within Echvi_3949at 4733.812 kb on + strand, within Echvi_3949at 4733.812 kb on + strand, within Echvi_3949at 4733.812 kb on + strand, within Echvi_3949at 4733.813 kb on - strand, within Echvi_3949at 4733.813 kb on - strand, within Echvi_3949at 4733.813 kb on - strand, within Echvi_3949at 4733.813 kb on - strand, within Echvi_3949at 4733.831 kb on - strand, within Echvi_3949at 4733.831 kb on - strand, within Echvi_3949at 4733.841 kb on - strand, within Echvi_3949at 4733.854 kb on + strand, within Echvi_3949at 4733.929 kb on + strand, within Echvi_3949at 4733.931 kb on + strand, within Echvi_3949at 4733.932 kb on - strand, within Echvi_3949at 4733.932 kb on - strand, within Echvi_3949at 4733.932 kb on - strand, within Echvi_3949at 4733.932 kb on - strand, within Echvi_3949at 4733.932 kb on - strand, within Echvi_3949at 4733.932 kb on - strandat 4733.932 kb on - strand, within Echvi_3949at 4733.960 kb on + strand, within Echvi_3949at 4733.960 kb on + strand, within Echvi_3949at 4733.970 kb on - strand, within Echvi_3949at 4733.983 kb on + strand, within Echvi_3949at 4734.042 kb on - strandat 4734.042 kb on - strandat 4734.079 kb on - strandat 4734.079 kb on - strandat 4734.117 kb on + strandat 4734.143 kb on + strandat 4734.155 kb on + strandat 4734.155 kb on + strandat 4734.156 kb on - strandat 4734.171 kb on - strandat 4734.171 kb on - strandat 4734.253 kb on + strandat 4734.253 kb on + strandat 4734.253 kb on + strandat 4734.253 kb on + strandat 4734.253 kb on + strandat 4734.254 kb on - strandat 4734.254 kb on - strandat 4734.372 kb on + strandat 4734.373 kb on - strandat 4734.386 kb on + strandat 4734.436 kb on + strand, within Echvi_3950at 4734.436 kb on + strand, within Echvi_3950at 4734.437 kb on - strand, within Echvi_3950at 4734.517 kb on + strand, within Echvi_3950at 4734.518 kb on - strand, within Echvi_3950at 4734.520 kb on + strand, within Echvi_3950at 4734.520 kb on + strand, within Echvi_3950at 4734.521 kb on - strand, within Echvi_3950at 4734.521 kb on - strand, within Echvi_3950at 4734.521 kb on - strand, within Echvi_3950at 4734.529 kb on - strand, within Echvi_3950at 4734.560 kb on + strand, within Echvi_3950at 4734.565 kb on - strand, within Echvi_3950at 4734.656 kb on + strand, within Echvi_3950at 4734.680 kb on + strand, within Echvi_3950at 4734.699 kb on - strand, within Echvi_3950at 4734.700 kb on + strand, within Echvi_3950at 4734.825 kb on + strand, within Echvi_3950at 4734.826 kb on - strand, within Echvi_3950at 4734.866 kb on + strand, within Echvi_3950at 4734.866 kb on + strand, within Echvi_3950at 4734.867 kb on - strand, within Echvi_3950at 4734.867 kb on - strand, within Echvi_3950at 4734.867 kb on - strand, within Echvi_3950at 4734.957 kb on + strand, within Echvi_3950at 4734.999 kb on - strand, within Echvi_3950at 4735.004 kb on + strand, within Echvi_3950at 4735.123 kb on - strand, within Echvi_3950at 4735.166 kb on - strand, within Echvi_3950at 4735.181 kb on - strand, within Echvi_3950at 4735.181 kb on - strand, within Echvi_3950at 4735.188 kb on - strand, within Echvi_3950at 4735.202 kb on - strand, within Echvi_3950at 4735.293 kb on - strand, within Echvi_3950at 4735.294 kb on + strand, within Echvi_3950at 4735.367 kb on + strand, within Echvi_3950at 4735.367 kb on + strand, within Echvi_3950at 4735.368 kb on - strand, within Echvi_3950at 4735.468 kb on + strandat 4735.486 kb on - strandat 4735.486 kb on - strandat 4735.520 kb on + strandat 4735.520 kb on + strandat 4735.521 kb on - strandat 4735.521 kb on - strandat 4735.628 kb on + strandat 4735.632 kb on + strandat 4735.690 kb on + strandat 4735.691 kb on - strandat 4735.691 kb on - strandat 4735.718 kb on + strandat 4735.723 kb on + strandat 4735.723 kb on + strandat 4735.724 kb on - strandat 4735.771 kb on + strand, within Echvi_3951at 4735.771 kb on + strand, within Echvi_3951at 4735.826 kb on - strand, within Echvi_3951at 4735.826 kb on - strand, within Echvi_3951at 4735.860 kb on + strand, within Echvi_3951at 4736.043 kb on - strand, within Echvi_3951at 4736.043 kb on - strand, within Echvi_3951at 4736.044 kb on + strand, within Echvi_3951at 4736.085 kb on - strand, within Echvi_3951at 4736.261 kb on + strand, within Echvi_3951at 4736.262 kb on - strand, within Echvi_3951at 4736.282 kb on + strand, within Echvi_3951at 4736.282 kb on + strand, within Echvi_3951at 4736.282 kb on + strand, within Echvi_3951at 4736.283 kb on - strand, within Echvi_3951at 4736.283 kb on - strand, within Echvi_3951at 4736.334 kb on + strand, within Echvi_3951at 4736.387 kb on + strand, within Echvi_3951at 4736.428 kb on + strand, within Echvi_3951at 4736.429 kb on - strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.489 kb on + strand, within Echvi_3951at 4736.490 kb on - strand, within Echvi_3951at 4736.490 kb on - strand, within Echvi_3951at 4736.490 kb on - strand, within Echvi_3951at 4736.490 kb on - strand, within Echvi_3951at 4736.490 kb on - strand, within Echvi_3951

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
remove
4,733,280 - -0.3
4,733,290 - -0.7
4,733,322 + Echvi_3949 0.11 -0.6
4,733,322 + Echvi_3949 0.11 -0.6
4,733,322 + Echvi_3949 0.11 -0.5
4,733,323 - Echvi_3949 0.11 +1.2
4,733,323 - Echvi_3949 0.11 -1.1
4,733,323 - Echvi_3949 0.11 +0.8
4,733,326 + Echvi_3949 0.12 +0.1
4,733,327 - Echvi_3949 0.12 -1.7
4,733,327 - Echvi_3949 0.12 -2.2
4,733,377 + Echvi_3949 0.18 +0.1
4,733,379 + Echvi_3949 0.18 -2.9
4,733,379 + Echvi_3949 0.18 +0.0
4,733,379 + Echvi_3949 0.18 +0.4
4,733,379 + Echvi_3949 0.18 -0.5
4,733,380 - Echvi_3949 0.18 -1.0
4,733,404 + Echvi_3949 0.21 -1.1
4,733,408 - Echvi_3949 0.21 -0.8
4,733,425 - Echvi_3949 0.23 +0.1
4,733,428 - Echvi_3949 0.23 +0.8
4,733,436 + Echvi_3949 0.24 +0.0
4,733,437 - Echvi_3949 0.24 -1.3
4,733,521 + Echvi_3949 0.34 +1.3
4,733,641 + Echvi_3949 0.48 +0.6
4,733,660 + Echvi_3949 0.50 -0.4
4,733,660 + Echvi_3949 0.50 +0.8
4,733,688 + Echvi_3949 0.53 -1.4
4,733,688 + Echvi_3949 0.53 -1.3
4,733,688 + Echvi_3949 0.53 +2.0
4,733,689 - Echvi_3949 0.53 -0.3
4,733,715 - Echvi_3949 0.56 +0.3
4,733,737 + Echvi_3949 0.59 +0.9
4,733,771 + Echvi_3949 0.62 -1.4
4,733,771 + Echvi_3949 0.62 -2.0
4,733,771 + Echvi_3949 0.62 -0.1
4,733,772 - Echvi_3949 0.63 -1.7
4,733,772 - Echvi_3949 0.63 -0.2
4,733,772 - Echvi_3949 0.63 -1.1
4,733,773 + Echvi_3949 0.63 +0.1
4,733,775 + Echvi_3949 0.63 -0.4
4,733,775 + Echvi_3949 0.63 -2.4
4,733,775 + Echvi_3949 0.63 -0.1
4,733,776 - Echvi_3949 0.63 -2.3
4,733,776 - Echvi_3949 0.63 -0.3
4,733,776 - Echvi_3949 0.63 -0.6
4,733,776 - Echvi_3949 0.63 -0.1
4,733,776 - Echvi_3949 0.63 -0.7
4,733,776 - Echvi_3949 0.63 +0.9
4,733,776 - Echvi_3949 0.63 +0.4
4,733,776 - Echvi_3949 0.63 -0.6
4,733,776 - Echvi_3949 0.63 +0.1
4,733,791 - Echvi_3949 0.65 -0.2
4,733,810 - Echvi_3949 0.67 +0.5
4,733,812 + Echvi_3949 0.67 +0.6
4,733,812 + Echvi_3949 0.67 -1.4
4,733,812 + Echvi_3949 0.67 +0.5
4,733,813 - Echvi_3949 0.67 +1.0
4,733,813 - Echvi_3949 0.67 +0.9
4,733,813 - Echvi_3949 0.67 -0.1
4,733,813 - Echvi_3949 0.67 -2.1
4,733,831 - Echvi_3949 0.69 -0.8
4,733,831 - Echvi_3949 0.69 +1.1
4,733,841 - Echvi_3949 0.70 -0.1
4,733,854 + Echvi_3949 0.72 -1.3
4,733,929 + Echvi_3949 0.80 +1.0
4,733,931 + Echvi_3949 0.81 -1.9
4,733,932 - Echvi_3949 0.81 -0.3
4,733,932 - Echvi_3949 0.81 -0.5
4,733,932 - Echvi_3949 0.81 +1.7
4,733,932 - Echvi_3949 0.81 +0.6
4,733,932 - Echvi_3949 0.81 -0.5
4,733,932 - +2.7
4,733,932 - Echvi_3949 0.81 +0.6
4,733,960 + Echvi_3949 0.84 -0.1
4,733,960 + Echvi_3949 0.84 -1.2
4,733,970 - Echvi_3949 0.85 -0.4
4,733,983 + Echvi_3949 0.87 -1.4
4,734,042 - +0.9
4,734,042 - +0.4
4,734,079 - +0.7
4,734,079 - -1.1
4,734,117 + -0.5
4,734,143 + +1.7
4,734,155 + +1.1
4,734,155 + +0.1
4,734,156 - -0.3
4,734,171 - +0.1
4,734,171 - +1.6
4,734,253 + -0.5
4,734,253 + +0.1
4,734,253 + -0.4
4,734,253 + -1.5
4,734,253 + -1.2
4,734,254 - +0.1
4,734,254 - -0.6
4,734,372 + -1.0
4,734,373 - +0.7
4,734,386 + +1.1
4,734,436 + Echvi_3950 0.13 +0.6
4,734,436 + Echvi_3950 0.13 +0.5
4,734,437 - Echvi_3950 0.13 +0.4
4,734,517 + Echvi_3950 0.20 +0.3
4,734,518 - Echvi_3950 0.20 +0.5
4,734,520 + Echvi_3950 0.20 -0.6
4,734,520 + Echvi_3950 0.20 -0.1
4,734,521 - Echvi_3950 0.20 -1.3
4,734,521 - Echvi_3950 0.20 +1.1
4,734,521 - Echvi_3950 0.20 +1.0
4,734,529 - Echvi_3950 0.21 +0.2
4,734,560 + Echvi_3950 0.23 +1.5
4,734,565 - Echvi_3950 0.24 -1.0
4,734,656 + Echvi_3950 0.31 +1.1
4,734,680 + Echvi_3950 0.33 +0.8
4,734,699 - Echvi_3950 0.34 +0.2
4,734,700 + Echvi_3950 0.34 +0.3
4,734,825 + Echvi_3950 0.44 +1.5
4,734,826 - Echvi_3950 0.44 -1.3
4,734,866 + Echvi_3950 0.48 +1.5
4,734,866 + Echvi_3950 0.48 +0.6
4,734,867 - Echvi_3950 0.48 -0.5
4,734,867 - Echvi_3950 0.48 +0.1
4,734,867 - Echvi_3950 0.48 -0.2
4,734,957 + Echvi_3950 0.55 +0.7
4,734,999 - Echvi_3950 0.58 +0.5
4,735,004 + Echvi_3950 0.59 +0.0
4,735,123 - Echvi_3950 0.68 +0.7
4,735,166 - Echvi_3950 0.72 +0.5
4,735,181 - Echvi_3950 0.73 -0.1
4,735,181 - Echvi_3950 0.73 -0.0
4,735,188 - Echvi_3950 0.73 -1.4
4,735,202 - Echvi_3950 0.75 +0.9
4,735,293 - Echvi_3950 0.82 +1.2
4,735,294 + Echvi_3950 0.82 +0.5
4,735,367 + Echvi_3950 0.88 -0.0
4,735,367 + Echvi_3950 0.88 +0.3
4,735,368 - Echvi_3950 0.88 +1.8
4,735,468 + +2.1
4,735,486 - +0.5
4,735,486 - +0.7
4,735,520 + +1.4
4,735,520 + -1.3
4,735,521 - -0.3
4,735,521 - +0.7
4,735,628 + +0.2
4,735,632 + +0.8
4,735,690 + -0.1
4,735,691 - +1.0
4,735,691 - +0.3
4,735,718 + +0.6
4,735,723 + +0.4
4,735,723 + +1.3
4,735,724 - +1.5
4,735,771 + Echvi_3951 0.11 +0.7
4,735,771 + Echvi_3951 0.11 -0.8
4,735,826 - Echvi_3951 0.16 +0.3
4,735,826 - Echvi_3951 0.16 -0.1
4,735,860 + Echvi_3951 0.20 +0.7
4,736,043 - Echvi_3951 0.38 -0.7
4,736,043 - Echvi_3951 0.38 +0.4
4,736,044 + Echvi_3951 0.38 -0.3
4,736,085 - Echvi_3951 0.42 +0.6
4,736,261 + Echvi_3951 0.60 -0.2
4,736,262 - Echvi_3951 0.60 +0.2
4,736,282 + Echvi_3951 0.62 +0.8
4,736,282 + Echvi_3951 0.62 +0.5
4,736,282 + Echvi_3951 0.62 +0.6
4,736,283 - Echvi_3951 0.62 +1.4
4,736,283 - Echvi_3951 0.62 +0.3
4,736,334 + Echvi_3951 0.67 +1.7
4,736,387 + Echvi_3951 0.72 -0.5
4,736,428 + Echvi_3951 0.76 +0.6
4,736,429 - Echvi_3951 0.76 +0.7
4,736,489 + Echvi_3951 0.82 +0.3
4,736,489 + Echvi_3951 0.82 +0.9
4,736,489 + Echvi_3951 0.82 +1.4
4,736,489 + Echvi_3951 0.82 +0.5
4,736,489 + Echvi_3951 0.82 +0.4
4,736,489 + Echvi_3951 0.82 +0.6
4,736,490 - Echvi_3951 0.83 -0.3
4,736,490 - Echvi_3951 0.83 +1.4
4,736,490 - Echvi_3951 0.83 -0.0
4,736,490 - Echvi_3951 0.83 -1.1
4,736,490 - Echvi_3951 0.83 -0.4

Or see this region's nucleotide sequence