Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3923

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3921 and Echvi_3922 are separated by 55 nucleotidesEchvi_3922 and Echvi_3923 overlap by 81 nucleotidesEchvi_3923 and Echvi_3924 are separated by 212 nucleotidesEchvi_3924 and Echvi_3925 are separated by 184 nucleotides Echvi_3921: Echvi_3921 - TonB-linked outer membrane protein, SusC/RagA family, at 4,695,630 to 4,699,151 _3921 Echvi_3922: Echvi_3922 - hypothetical protein, at 4,699,207 to 4,699,380 _3922 Echvi_3923: Echvi_3923 - Fe2+-dicitrate sensor, membrane component, at 4,699,300 to 4,700,334 _3923 Echvi_3924: Echvi_3924 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,700,547 to 4,701,122 _3924 Echvi_3925: Echvi_3925 - methionine-S-sulfoxide reductase, at 4,701,307 to 4,701,912 _3925 Position (kb) 4699 4700 4701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4698.398 kb on + strand, within Echvi_3921at 4698.399 kb on - strand, within Echvi_3921at 4698.405 kb on + strand, within Echvi_3921at 4698.434 kb on + strand, within Echvi_3921at 4698.434 kb on + strand, within Echvi_3921at 4698.435 kb on - strand, within Echvi_3921at 4698.453 kb on - strand, within Echvi_3921at 4698.467 kb on + strand, within Echvi_3921at 4698.468 kb on - strand, within Echvi_3921at 4698.546 kb on + strand, within Echvi_3921at 4698.546 kb on + strand, within Echvi_3921at 4698.546 kb on + strand, within Echvi_3921at 4698.547 kb on - strand, within Echvi_3921at 4698.547 kb on - strand, within Echvi_3921at 4698.547 kb on - strand, within Echvi_3921at 4698.587 kb on - strand, within Echvi_3921at 4698.603 kb on + strand, within Echvi_3921at 4698.604 kb on - strand, within Echvi_3921at 4698.662 kb on + strand, within Echvi_3921at 4698.744 kb on + strand, within Echvi_3921at 4698.744 kb on + strand, within Echvi_3921at 4698.744 kb on + strand, within Echvi_3921at 4698.744 kb on + strand, within Echvi_3921at 4698.745 kb on - strand, within Echvi_3921at 4698.745 kb on - strand, within Echvi_3921at 4698.758 kb on - strand, within Echvi_3921at 4698.805 kb on + strandat 4698.805 kb on + strandat 4698.806 kb on - strandat 4698.806 kb on - strandat 4698.806 kb on - strandat 4698.806 kb on - strandat 4698.809 kb on + strandat 4698.922 kb on - strandat 4698.922 kb on - strandat 4698.942 kb on - strandat 4698.975 kb on - strandat 4699.018 kb on + strandat 4699.018 kb on + strandat 4699.018 kb on + strandat 4699.018 kb on + strandat 4699.018 kb on + strandat 4699.018 kb on + strandat 4699.019 kb on - strandat 4699.019 kb on - strandat 4699.019 kb on - strandat 4699.019 kb on - strandat 4699.019 kb on - strandat 4699.019 kb on - strandat 4699.062 kb on + strandat 4699.108 kb on + strandat 4699.108 kb on + strandat 4699.152 kb on - strandat 4699.155 kb on + strandat 4699.156 kb on - strandat 4699.156 kb on - strandat 4699.171 kb on - strandat 4699.174 kb on + strandat 4699.230 kb on - strand, within Echvi_3922at 4699.308 kb on + strandat 4699.308 kb on + strandat 4699.327 kb on + strandat 4699.378 kb on + strandat 4699.435 kb on + strand, within Echvi_3923at 4699.436 kb on - strand, within Echvi_3923at 4699.454 kb on + strand, within Echvi_3923at 4699.468 kb on + strand, within Echvi_3923at 4699.500 kb on + strand, within Echvi_3923at 4699.509 kb on + strand, within Echvi_3923at 4699.512 kb on + strand, within Echvi_3923at 4699.512 kb on + strand, within Echvi_3923at 4699.512 kb on + strand, within Echvi_3923at 4699.512 kb on + strand, within Echvi_3923at 4699.513 kb on - strand, within Echvi_3923at 4699.513 kb on - strand, within Echvi_3923at 4699.513 kb on - strand, within Echvi_3923at 4699.542 kb on - strand, within Echvi_3923at 4699.563 kb on + strand, within Echvi_3923at 4699.563 kb on + strand, within Echvi_3923at 4699.563 kb on + strand, within Echvi_3923at 4699.563 kb on + strand, within Echvi_3923at 4699.566 kb on + strand, within Echvi_3923at 4699.577 kb on + strand, within Echvi_3923at 4699.577 kb on + strand, within Echvi_3923at 4699.578 kb on - strand, within Echvi_3923at 4699.599 kb on + strand, within Echvi_3923at 4699.599 kb on + strand, within Echvi_3923at 4699.599 kb on + strand, within Echvi_3923at 4699.599 kb on + strand, within Echvi_3923at 4699.600 kb on - strand, within Echvi_3923at 4699.603 kb on + strand, within Echvi_3923at 4699.604 kb on - strand, within Echvi_3923at 4699.604 kb on - strand, within Echvi_3923at 4699.611 kb on + strand, within Echvi_3923at 4699.612 kb on - strand, within Echvi_3923at 4699.633 kb on - strand, within Echvi_3923at 4699.651 kb on - strand, within Echvi_3923at 4699.663 kb on + strand, within Echvi_3923at 4699.752 kb on + strand, within Echvi_3923at 4699.753 kb on - strand, within Echvi_3923at 4699.753 kb on - strand, within Echvi_3923at 4699.770 kb on + strand, within Echvi_3923at 4699.869 kb on + strand, within Echvi_3923at 4699.870 kb on - strand, within Echvi_3923at 4699.870 kb on - strand, within Echvi_3923at 4699.886 kb on + strand, within Echvi_3923at 4699.888 kb on + strand, within Echvi_3923at 4699.889 kb on - strand, within Echvi_3923at 4699.904 kb on - strand, within Echvi_3923at 4699.998 kb on + strand, within Echvi_3923at 4699.998 kb on + strand, within Echvi_3923at 4699.998 kb on + strand, within Echvi_3923at 4699.998 kb on + strand, within Echvi_3923at 4699.999 kb on - strand, within Echvi_3923at 4699.999 kb on - strand, within Echvi_3923at 4699.999 kb on - strand, within Echvi_3923at 4699.999 kb on - strand, within Echvi_3923at 4700.051 kb on + strand, within Echvi_3923at 4700.135 kb on - strand, within Echvi_3923at 4700.135 kb on - strand, within Echvi_3923at 4700.135 kb on - strand, within Echvi_3923at 4700.210 kb on + strand, within Echvi_3923at 4700.210 kb on + strand, within Echvi_3923at 4700.210 kb on + strandat 4700.211 kb on - strand, within Echvi_3923at 4700.270 kb on - strandat 4700.270 kb on - strandat 4700.317 kb on + strandat 4700.319 kb on + strandat 4700.320 kb on - strandat 4700.320 kb on - strandat 4700.353 kb on - strandat 4700.353 kb on - strandat 4700.359 kb on - strandat 4700.359 kb on - strandat 4700.374 kb on - strandat 4700.490 kb on + strandat 4700.544 kb on + strandat 4700.569 kb on + strandat 4700.594 kb on + strandat 4700.616 kb on + strand, within Echvi_3924at 4700.623 kb on + strand, within Echvi_3924at 4700.623 kb on + strand, within Echvi_3924at 4700.659 kb on - strand, within Echvi_3924at 4700.795 kb on + strand, within Echvi_3924at 4700.796 kb on - strand, within Echvi_3924at 4700.861 kb on - strand, within Echvi_3924at 4700.861 kb on - strand, within Echvi_3924at 4700.864 kb on + strand, within Echvi_3924at 4700.864 kb on + strand, within Echvi_3924at 4700.865 kb on - strand, within Echvi_3924at 4700.867 kb on + strand, within Echvi_3924at 4700.887 kb on - strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.038 kb on + strand, within Echvi_3924at 4701.039 kb on - strand, within Echvi_3924at 4701.039 kb on - strand, within Echvi_3924at 4701.044 kb on - strand, within Echvi_3924at 4701.044 kb on - strand, within Echvi_3924at 4701.068 kb on - strandat 4701.092 kb on + strandat 4701.093 kb on - strandat 4701.093 kb on - strandat 4701.100 kb on + strandat 4701.155 kb on + strandat 4701.159 kb on - strandat 4701.159 kb on - strandat 4701.169 kb on + strandat 4701.176 kb on - strandat 4701.199 kb on - strandat 4701.201 kb on + strandat 4701.201 kb on + strandat 4701.202 kb on - strandat 4701.224 kb on - strandat 4701.244 kb on + strandat 4701.245 kb on - strandat 4701.271 kb on + strandat 4701.272 kb on - strandat 4701.274 kb on + strandat 4701.274 kb on + strandat 4701.275 kb on - strandat 4701.275 kb on - strandat 4701.275 kb on - strandat 4701.294 kb on + strandat 4701.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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4,698,398 + Echvi_3921 0.79 -0.5
4,698,399 - Echvi_3921 0.79 -0.3
4,698,405 + Echvi_3921 0.79 -1.4
4,698,434 + Echvi_3921 0.80 -1.3
4,698,434 + Echvi_3921 0.80 -0.8
4,698,435 - Echvi_3921 0.80 -0.2
4,698,453 - Echvi_3921 0.80 +1.7
4,698,467 + Echvi_3921 0.81 -0.7
4,698,468 - Echvi_3921 0.81 +0.7
4,698,546 + Echvi_3921 0.83 -0.2
4,698,546 + Echvi_3921 0.83 -0.1
4,698,546 + Echvi_3921 0.83 -0.2
4,698,547 - Echvi_3921 0.83 -1.6
4,698,547 - Echvi_3921 0.83 +0.7
4,698,547 - Echvi_3921 0.83 -0.9
4,698,587 - Echvi_3921 0.84 +0.9
4,698,603 + Echvi_3921 0.84 -0.9
4,698,604 - Echvi_3921 0.84 -0.3
4,698,662 + Echvi_3921 0.86 +0.7
4,698,744 + Echvi_3921 0.88 +0.0
4,698,744 + Echvi_3921 0.88 -0.0
4,698,744 + Echvi_3921 0.88 +0.4
4,698,744 + Echvi_3921 0.88 +0.9
4,698,745 - Echvi_3921 0.88 +2.4
4,698,745 - Echvi_3921 0.88 +1.7
4,698,758 - Echvi_3921 0.89 -0.3
4,698,805 + -0.2
4,698,805 + -2.9
4,698,806 - -0.4
4,698,806 - -0.1
4,698,806 - -1.0
4,698,806 - +0.9
4,698,809 + +0.4
4,698,922 - -0.7
4,698,922 - +0.7
4,698,942 - +1.4
4,698,975 - +0.0
4,699,018 + +0.6
4,699,018 + +0.4
4,699,018 + +0.5
4,699,018 + -0.0
4,699,018 + +1.7
4,699,018 + -0.2
4,699,019 - -0.6
4,699,019 - -0.2
4,699,019 - -1.3
4,699,019 - -1.3
4,699,019 - +1.4
4,699,019 - +0.0
4,699,062 + +0.9
4,699,108 + -0.1
4,699,108 + +1.4
4,699,152 - -1.2
4,699,155 + +1.7
4,699,156 - +0.7
4,699,156 - -0.3
4,699,171 - +1.3
4,699,174 + -0.2
4,699,230 - Echvi_3922 0.13 +2.0
4,699,308 + -0.7
4,699,308 + -0.5
4,699,327 + -0.3
4,699,378 + -0.6
4,699,435 + Echvi_3923 0.13 -0.3
4,699,436 - Echvi_3923 0.13 +1.8
4,699,454 + Echvi_3923 0.15 +0.6
4,699,468 + Echvi_3923 0.16 +0.2
4,699,500 + Echvi_3923 0.19 -0.3
4,699,509 + Echvi_3923 0.20 +0.8
4,699,512 + Echvi_3923 0.20 -1.0
4,699,512 + Echvi_3923 0.20 +0.7
4,699,512 + Echvi_3923 0.20 +0.6
4,699,512 + Echvi_3923 0.20 -0.1
4,699,513 - Echvi_3923 0.21 +2.6
4,699,513 - Echvi_3923 0.21 +1.9
4,699,513 - Echvi_3923 0.21 +2.0
4,699,542 - Echvi_3923 0.23 +3.0
4,699,563 + Echvi_3923 0.25 -0.6
4,699,563 + Echvi_3923 0.25 +0.5
4,699,563 + Echvi_3923 0.25 -0.7
4,699,563 + Echvi_3923 0.25 -1.4
4,699,566 + Echvi_3923 0.26 -0.6
4,699,577 + Echvi_3923 0.27 -1.4
4,699,577 + Echvi_3923 0.27 -0.1
4,699,578 - Echvi_3923 0.27 +2.9
4,699,599 + Echvi_3923 0.29 -1.1
4,699,599 + Echvi_3923 0.29 -0.5
4,699,599 + Echvi_3923 0.29 -0.1
4,699,599 + Echvi_3923 0.29 +0.4
4,699,600 - Echvi_3923 0.29 +2.1
4,699,603 + Echvi_3923 0.29 -1.0
4,699,604 - Echvi_3923 0.29 +3.5
4,699,604 - Echvi_3923 0.29 +2.4
4,699,611 + Echvi_3923 0.30 -1.1
4,699,612 - Echvi_3923 0.30 +2.5
4,699,633 - Echvi_3923 0.32 +2.0
4,699,651 - Echvi_3923 0.34 +2.6
4,699,663 + Echvi_3923 0.35 +1.3
4,699,752 + Echvi_3923 0.44 +0.4
4,699,753 - Echvi_3923 0.44 +2.2
4,699,753 - Echvi_3923 0.44 +2.4
4,699,770 + Echvi_3923 0.45 +0.0
4,699,869 + Echvi_3923 0.55 -0.4
4,699,870 - Echvi_3923 0.55 +2.1
4,699,870 - Echvi_3923 0.55 +2.1
4,699,886 + Echvi_3923 0.57 -1.3
4,699,888 + Echvi_3923 0.57 -1.6
4,699,889 - Echvi_3923 0.57 +2.1
4,699,904 - Echvi_3923 0.58 +2.4
4,699,998 + Echvi_3923 0.67 +0.4
4,699,998 + Echvi_3923 0.67 +0.1
4,699,998 + Echvi_3923 0.67 -0.3
4,699,998 + Echvi_3923 0.67 -0.9
4,699,999 - Echvi_3923 0.68 +2.6
4,699,999 - Echvi_3923 0.68 +1.8
4,699,999 - Echvi_3923 0.68 +3.4
4,699,999 - Echvi_3923 0.68 +2.1
4,700,051 + Echvi_3923 0.73 +0.0
4,700,135 - Echvi_3923 0.81 +2.7
4,700,135 - Echvi_3923 0.81 +2.1
4,700,135 - Echvi_3923 0.81 +2.3
4,700,210 + Echvi_3923 0.88 -0.5
4,700,210 + Echvi_3923 0.88 +2.0
4,700,210 + +0.4
4,700,211 - Echvi_3923 0.88 +1.7
4,700,270 - +2.7
4,700,270 - +1.4
4,700,317 + -1.6
4,700,319 + +1.3
4,700,320 - +3.2
4,700,320 - +2.5
4,700,353 - +2.1
4,700,353 - +2.0
4,700,359 - +2.3
4,700,359 - +2.8
4,700,374 - +2.8
4,700,490 + +2.8
4,700,544 + +0.7
4,700,569 + -0.2
4,700,594 + -0.4
4,700,616 + Echvi_3924 0.12 +0.2
4,700,623 + Echvi_3924 0.13 +2.5
4,700,623 + Echvi_3924 0.13 -0.5
4,700,659 - Echvi_3924 0.19 +2.5
4,700,795 + Echvi_3924 0.43 -0.1
4,700,796 - Echvi_3924 0.43 +1.9
4,700,861 - Echvi_3924 0.55 +1.7
4,700,861 - Echvi_3924 0.55 +2.4
4,700,864 + Echvi_3924 0.55 -0.5
4,700,864 + Echvi_3924 0.55 -0.5
4,700,865 - Echvi_3924 0.55 +2.4
4,700,867 + Echvi_3924 0.56 +0.0
4,700,887 - Echvi_3924 0.59 +2.1
4,701,038 + Echvi_3924 0.85 -0.8
4,701,038 + Echvi_3924 0.85 -0.7
4,701,038 + Echvi_3924 0.85 +1.1
4,701,038 + Echvi_3924 0.85 -1.1
4,701,038 + Echvi_3924 0.85 -0.9
4,701,038 + Echvi_3924 0.85 +1.1
4,701,039 - Echvi_3924 0.85 +1.8
4,701,039 - Echvi_3924 0.85 +2.0
4,701,044 - Echvi_3924 0.86 +2.0
4,701,044 - Echvi_3924 0.86 +1.6
4,701,068 - +0.9
4,701,092 + +0.2
4,701,093 - +0.5
4,701,093 - +1.7
4,701,100 + -0.0
4,701,155 + +2.1
4,701,159 - +2.5
4,701,159 - +1.7
4,701,169 + +0.6
4,701,176 - +0.5
4,701,199 - +1.1
4,701,201 + -0.2
4,701,201 + -0.3
4,701,202 - +1.7
4,701,224 - +2.2
4,701,244 + -1.6
4,701,245 - +2.4
4,701,271 + +1.2
4,701,272 - +1.1
4,701,274 + -0.2
4,701,274 + +0.7
4,701,275 - +0.9
4,701,275 - +2.0
4,701,275 - +1.5
4,701,294 + -1.0
4,701,326 + +0.1

Or see this region's nucleotide sequence