Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2956

Experiment: m.b. Aluminum chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_2954 and Echvi_2955 are separated by 63 nucleotidesEchvi_2955 and Echvi_2956 are separated by 160 nucleotidesEchvi_2956 and Echvi_2957 are separated by 34 nucleotides Echvi_2954: Echvi_2954 - Nucleoside permease, at 3,531,092 to 3,532,378 _2954 Echvi_2955: Echvi_2955 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,532,442 to 3,532,879 _2955 Echvi_2956: Echvi_2956 - hypothetical protein, at 3,533,040 to 3,533,309 _2956 Echvi_2957: Echvi_2957 - phosphoenolpyruvate carboxykinase (ATP), at 3,533,344 to 3,534,942 _2957 Position (kb) 3533 3534Strain fitness (log2 ratio) -2 -1 0 1at 3532.082 kb on - strand, within Echvi_2954at 3532.177 kb on - strand, within Echvi_2954at 3532.340 kb on - strandat 3532.376 kb on + strandat 3532.399 kb on - strandat 3532.399 kb on - strandat 3532.436 kb on + strandat 3532.443 kb on + strandat 3532.443 kb on + strandat 3532.443 kb on + strandat 3532.443 kb on + strandat 3532.444 kb on - strandat 3532.496 kb on + strand, within Echvi_2955at 3532.500 kb on - strand, within Echvi_2955at 3532.625 kb on + strand, within Echvi_2955at 3532.678 kb on + strand, within Echvi_2955at 3532.678 kb on + strand, within Echvi_2955at 3532.679 kb on - strand, within Echvi_2955at 3532.757 kb on - strand, within Echvi_2955at 3532.768 kb on - strand, within Echvi_2955at 3532.768 kb on - strand, within Echvi_2955at 3532.790 kb on + strand, within Echvi_2955at 3533.013 kb on + strandat 3533.031 kb on + strandat 3533.035 kb on + strandat 3533.045 kb on + strandat 3533.046 kb on - strandat 3533.122 kb on + strand, within Echvi_2956at 3533.122 kb on + strand, within Echvi_2956at 3533.122 kb on + strand, within Echvi_2956at 3533.199 kb on + strand, within Echvi_2956at 3533.199 kb on + strand, within Echvi_2956at 3533.199 kb on + strand, within Echvi_2956at 3533.200 kb on - strand, within Echvi_2956at 3533.200 kb on - strand, within Echvi_2956at 3533.225 kb on + strand, within Echvi_2956at 3533.258 kb on - strand, within Echvi_2956at 3533.345 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
remove
3,532,082 - Echvi_2954 0.77 -1.4
3,532,177 - Echvi_2954 0.84 -0.6
3,532,340 - -0.5
3,532,376 + -0.3
3,532,399 - +0.3
3,532,399 - -0.8
3,532,436 + -0.3
3,532,443 + -1.9
3,532,443 + -0.3
3,532,443 + -0.3
3,532,443 + +1.4
3,532,444 - +1.2
3,532,496 + Echvi_2955 0.12 -1.6
3,532,500 - Echvi_2955 0.13 -1.3
3,532,625 + Echvi_2955 0.42 +0.5
3,532,678 + Echvi_2955 0.54 -0.0
3,532,678 + Echvi_2955 0.54 -1.1
3,532,679 - Echvi_2955 0.54 +1.5
3,532,757 - Echvi_2955 0.72 -0.4
3,532,768 - Echvi_2955 0.74 +0.7
3,532,768 - Echvi_2955 0.74 +0.5
3,532,790 + Echvi_2955 0.79 +0.4
3,533,013 + -1.1
3,533,031 + -0.4
3,533,035 + -0.2
3,533,045 + +0.2
3,533,046 - -0.3
3,533,122 + Echvi_2956 0.30 +0.3
3,533,122 + Echvi_2956 0.30 -0.5
3,533,122 + Echvi_2956 0.30 +0.6
3,533,199 + Echvi_2956 0.59 +1.2
3,533,199 + Echvi_2956 0.59 -0.8
3,533,199 + Echvi_2956 0.59 -0.3
3,533,200 - Echvi_2956 0.59 -1.1
3,533,200 - Echvi_2956 0.59 +0.2
3,533,225 + Echvi_2956 0.69 +1.6
3,533,258 - Echvi_2956 0.81 +0.5
3,533,345 + -1.2

Or see this region's nucleotide sequence