Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2940

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2939 and Echvi_2940 are separated by 160 nucleotidesEchvi_2940 and Echvi_2941 are separated by 88 nucleotides Echvi_2939: Echvi_2939 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 3,517,218 to 3,518,075 _2939 Echvi_2940: Echvi_2940 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 3,518,236 to 3,518,991 _2940 Echvi_2941: Echvi_2941 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 3,519,080 to 3,520,426 _2941 Position (kb) 3518 3519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3517.281 kb on + strandat 3517.281 kb on + strandat 3517.304 kb on + strand, within Echvi_2939at 3517.304 kb on + strand, within Echvi_2939at 3517.304 kb on + strand, within Echvi_2939at 3517.378 kb on + strand, within Echvi_2939at 3517.379 kb on - strand, within Echvi_2939at 3517.387 kb on - strand, within Echvi_2939at 3517.387 kb on - strand, within Echvi_2939at 3517.404 kb on - strand, within Echvi_2939at 3517.430 kb on + strand, within Echvi_2939at 3517.430 kb on + strand, within Echvi_2939at 3517.658 kb on - strand, within Echvi_2939at 3517.778 kb on + strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.779 kb on - strand, within Echvi_2939at 3517.826 kb on + strand, within Echvi_2939at 3517.829 kb on - strand, within Echvi_2939at 3518.086 kb on + strandat 3518.086 kb on + strandat 3518.087 kb on - strandat 3518.087 kb on - strandat 3518.092 kb on - strandat 3518.094 kb on + strandat 3518.188 kb on - strandat 3518.216 kb on - strandat 3518.273 kb on + strandat 3518.310 kb on + strandat 3518.311 kb on - strandat 3518.411 kb on + strand, within Echvi_2940at 3518.445 kb on + strand, within Echvi_2940at 3518.598 kb on + strand, within Echvi_2940at 3518.652 kb on + strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.653 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.655 kb on - strand, within Echvi_2940at 3518.679 kb on - strand, within Echvi_2940at 3518.747 kb on - strand, within Echvi_2940at 3518.753 kb on - strand, within Echvi_2940at 3518.835 kb on + strand, within Echvi_2940at 3518.836 kb on - strand, within Echvi_2940at 3518.888 kb on + strand, within Echvi_2940at 3518.889 kb on - strand, within Echvi_2940at 3519.009 kb on + strandat 3519.009 kb on + strandat 3519.013 kb on + strandat 3519.016 kb on - strandat 3519.129 kb on + strandat 3519.178 kb on + strandat 3519.209 kb on + strandat 3519.246 kb on + strand, within Echvi_2941at 3519.247 kb on - strand, within Echvi_2941at 3519.286 kb on + strand, within Echvi_2941at 3519.286 kb on + strand, within Echvi_2941at 3519.287 kb on - strand, within Echvi_2941at 3519.287 kb on - strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.288 kb on + strand, within Echvi_2941at 3519.289 kb on - strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.311 kb on + strand, within Echvi_2941at 3519.312 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.316 kb on - strand, within Echvi_2941at 3519.382 kb on + strand, within Echvi_2941at 3519.511 kb on + strand, within Echvi_2941at 3519.512 kb on - strand, within Echvi_2941at 3519.512 kb on - strand, within Echvi_2941at 3519.530 kb on + strand, within Echvi_2941at 3519.531 kb on - strand, within Echvi_2941at 3519.538 kb on + strand, within Echvi_2941at 3519.630 kb on - strand, within Echvi_2941at 3519.663 kb on + strand, within Echvi_2941at 3519.663 kb on + strand, within Echvi_2941at 3519.664 kb on - strand, within Echvi_2941at 3519.746 kb on - strand, within Echvi_2941at 3519.854 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.939 kb on + strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.940 kb on - strand, within Echvi_2941at 3519.962 kb on + strand, within Echvi_2941at 3519.963 kb on - strand, within Echvi_2941

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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3,517,281 + +0.5
3,517,281 + +1.1
3,517,304 + Echvi_2939 0.10 -1.4
3,517,304 + Echvi_2939 0.10 +1.2
3,517,304 + Echvi_2939 0.10 -0.2
3,517,378 + Echvi_2939 0.19 +0.8
3,517,379 - Echvi_2939 0.19 +0.1
3,517,387 - Echvi_2939 0.20 +0.6
3,517,387 - Echvi_2939 0.20 -0.9
3,517,404 - Echvi_2939 0.22 +0.5
3,517,430 + Echvi_2939 0.25 +0.6
3,517,430 + Echvi_2939 0.25 +1.2
3,517,658 - Echvi_2939 0.51 -1.2
3,517,778 + Echvi_2939 0.65 -0.1
3,517,779 - Echvi_2939 0.65 +0.2
3,517,779 - Echvi_2939 0.65 +2.1
3,517,779 - Echvi_2939 0.65 -0.5
3,517,826 + Echvi_2939 0.71 -0.4
3,517,829 - Echvi_2939 0.71 +1.0
3,518,086 + +0.9
3,518,086 + +1.4
3,518,087 - +1.2
3,518,087 - -0.0
3,518,092 - +1.4
3,518,094 + -0.8
3,518,188 - -0.1
3,518,216 - -1.0
3,518,273 + +0.2
3,518,310 + +0.5
3,518,311 - -1.2
3,518,411 + Echvi_2940 0.23 -0.3
3,518,445 + Echvi_2940 0.28 +1.6
3,518,598 + Echvi_2940 0.48 +0.6
3,518,652 + Echvi_2940 0.55 +1.8
3,518,653 - Echvi_2940 0.55 +0.2
3,518,653 - Echvi_2940 0.55 +0.1
3,518,653 - Echvi_2940 0.55 +0.4
3,518,655 - Echvi_2940 0.55 -1.4
3,518,655 - Echvi_2940 0.55 -0.0
3,518,655 - Echvi_2940 0.55 +0.8
3,518,679 - Echvi_2940 0.59 -0.9
3,518,747 - Echvi_2940 0.68 +0.4
3,518,753 - Echvi_2940 0.68 +0.0
3,518,835 + Echvi_2940 0.79 +0.5
3,518,836 - Echvi_2940 0.79 -0.8
3,518,888 + Echvi_2940 0.86 -0.1
3,518,889 - Echvi_2940 0.86 +0.4
3,519,009 + +0.8
3,519,009 + +0.1
3,519,013 + -0.2
3,519,016 - +0.8
3,519,129 + -0.2
3,519,178 + +0.8
3,519,209 + +0.0
3,519,246 + Echvi_2941 0.12 -0.2
3,519,247 - Echvi_2941 0.12 -3.1
3,519,286 + Echvi_2941 0.15 -0.8
3,519,286 + Echvi_2941 0.15 +0.7
3,519,287 - Echvi_2941 0.15 +1.3
3,519,287 - Echvi_2941 0.15 -1.1
3,519,288 + Echvi_2941 0.15 -1.1
3,519,288 + Echvi_2941 0.15 -0.6
3,519,288 + Echvi_2941 0.15 +0.3
3,519,288 + Echvi_2941 0.15 +0.5
3,519,288 + Echvi_2941 0.15 -0.6
3,519,288 + Echvi_2941 0.15 -0.2
3,519,289 - Echvi_2941 0.16 +0.2
3,519,311 + Echvi_2941 0.17 +1.8
3,519,311 + Echvi_2941 0.17 -1.8
3,519,311 + Echvi_2941 0.17 +1.2
3,519,311 + Echvi_2941 0.17 -0.5
3,519,312 - Echvi_2941 0.17 -0.2
3,519,316 - Echvi_2941 0.18 -0.8
3,519,316 - Echvi_2941 0.18 -1.5
3,519,316 - Echvi_2941 0.18 -0.5
3,519,382 + Echvi_2941 0.22 -0.2
3,519,511 + Echvi_2941 0.32 +1.2
3,519,512 - Echvi_2941 0.32 +0.5
3,519,512 - Echvi_2941 0.32 +1.0
3,519,530 + Echvi_2941 0.33 -0.2
3,519,531 - Echvi_2941 0.33 +0.5
3,519,538 + Echvi_2941 0.34 -1.1
3,519,630 - Echvi_2941 0.41 -0.4
3,519,663 + Echvi_2941 0.43 -0.2
3,519,663 + Echvi_2941 0.43 +0.1
3,519,664 - Echvi_2941 0.43 -0.5
3,519,746 - Echvi_2941 0.49 +0.3
3,519,854 + Echvi_2941 0.57 -0.2
3,519,939 + Echvi_2941 0.64 -0.2
3,519,939 + Echvi_2941 0.64 -1.1
3,519,939 + Echvi_2941 0.64 +0.9
3,519,940 - Echvi_2941 0.64 +1.8
3,519,940 - Echvi_2941 0.64 -0.7
3,519,940 - Echvi_2941 0.64 -0.6
3,519,962 + Echvi_2941 0.65 -0.2
3,519,963 - Echvi_2941 0.66 +0.6

Or see this region's nucleotide sequence