Experiment: m.b. Aluminum chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1898 and Echvi_1899 are separated by 34 nucleotides Echvi_1899 and Echvi_1900 are separated by 356 nucleotides Echvi_1900 and Echvi_1901 are separated by 59 nucleotides
Echvi_1898: Echvi_1898 - Signal transduction histidine kinase, at 2,225,021 to 2,226,856
_1898
Echvi_1899: Echvi_1899 - hypothetical protein, at 2,226,891 to 2,228,789
_1899
Echvi_1900: Echvi_1900 - nitrite reductase [NAD(P)H], small subunit, at 2,229,146 to 2,229,523
_1900
Echvi_1901: Echvi_1901 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 2,229,583 to 2,232,078
_1901
Position (kb)
2226
2227
2228
2229 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2225.920 kb on - strand, within Echvi_1898 at 2226.003 kb on + strand at 2226.004 kb on - strand, within Echvi_1898 at 2226.041 kb on - strand, within Echvi_1898 at 2226.042 kb on + strand, within Echvi_1898 at 2226.043 kb on - strand, within Echvi_1898 at 2226.071 kb on + strand, within Echvi_1898 at 2226.081 kb on + strand, within Echvi_1898 at 2226.150 kb on - strand, within Echvi_1898 at 2226.239 kb on + strand, within Echvi_1898 at 2226.239 kb on + strand, within Echvi_1898 at 2226.252 kb on - strand, within Echvi_1898 at 2226.275 kb on + strand, within Echvi_1898 at 2226.275 kb on + strand, within Echvi_1898 at 2226.375 kb on - strand, within Echvi_1898 at 2226.443 kb on - strand, within Echvi_1898 at 2226.506 kb on + strand, within Echvi_1898 at 2226.540 kb on - strand, within Echvi_1898 at 2226.589 kb on - strand, within Echvi_1898 at 2226.630 kb on - strand, within Echvi_1898 at 2226.636 kb on + strand, within Echvi_1898 at 2226.749 kb on - strand at 2226.781 kb on - strand at 2226.781 kb on - strand at 2226.836 kb on - strand at 2226.885 kb on + strand at 2226.885 kb on + strand at 2226.885 kb on + strand at 2226.918 kb on - strand at 2226.921 kb on + strand at 2226.922 kb on - strand at 2226.940 kb on + strand at 2226.941 kb on - strand at 2226.945 kb on + strand at 2226.950 kb on + strand at 2226.954 kb on - strand at 2226.954 kb on - strand at 2226.954 kb on - strand at 2226.959 kb on + strand at 2226.960 kb on - strand at 2226.960 kb on - strand at 2226.965 kb on + strand at 2226.965 kb on + strand at 2226.966 kb on - strand at 2226.990 kb on - strand at 2227.009 kb on - strand at 2227.028 kb on + strand at 2227.029 kb on - strand at 2227.030 kb on + strand at 2227.030 kb on + strand at 2227.031 kb on - strand at 2227.182 kb on - strand, within Echvi_1899 at 2227.203 kb on - strand, within Echvi_1899 at 2227.209 kb on - strand, within Echvi_1899 at 2227.229 kb on + strand, within Echvi_1899 at 2227.252 kb on + strand, within Echvi_1899 at 2227.358 kb on - strand, within Echvi_1899 at 2227.358 kb on - strand, within Echvi_1899 at 2227.359 kb on + strand, within Echvi_1899 at 2227.365 kb on - strand, within Echvi_1899 at 2227.365 kb on - strand, within Echvi_1899 at 2227.463 kb on + strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.464 kb on - strand, within Echvi_1899 at 2227.480 kb on + strand, within Echvi_1899 at 2227.488 kb on - strand, within Echvi_1899 at 2227.521 kb on + strand, within Echvi_1899 at 2227.558 kb on - strand, within Echvi_1899 at 2227.588 kb on - strand, within Echvi_1899 at 2227.644 kb on + strand, within Echvi_1899 at 2227.655 kb on - strand, within Echvi_1899 at 2227.655 kb on - strand, within Echvi_1899 at 2227.680 kb on + strand, within Echvi_1899 at 2227.707 kb on + strand, within Echvi_1899 at 2227.708 kb on - strand, within Echvi_1899 at 2227.713 kb on + strand, within Echvi_1899 at 2227.713 kb on + strand, within Echvi_1899 at 2227.714 kb on - strand, within Echvi_1899 at 2227.714 kb on - strand, within Echvi_1899 at 2227.764 kb on - strand, within Echvi_1899 at 2227.813 kb on + strand, within Echvi_1899 at 2227.814 kb on - strand, within Echvi_1899 at 2227.814 kb on - strand, within Echvi_1899 at 2227.821 kb on - strand, within Echvi_1899 at 2227.821 kb on - strand, within Echvi_1899 at 2227.891 kb on - strand, within Echvi_1899 at 2227.900 kb on + strand, within Echvi_1899 at 2227.901 kb on - strand, within Echvi_1899 at 2227.901 kb on - strand, within Echvi_1899 at 2227.901 kb on - strand, within Echvi_1899 at 2227.903 kb on - strand, within Echvi_1899 at 2227.934 kb on + strand, within Echvi_1899 at 2227.954 kb on + strand, within Echvi_1899 at 2227.954 kb on + strand, within Echvi_1899 at 2227.954 kb on + strand, within Echvi_1899 at 2227.955 kb on - strand, within Echvi_1899 at 2227.955 kb on - strand, within Echvi_1899 at 2227.955 kb on - strand, within Echvi_1899 at 2227.956 kb on + strand, within Echvi_1899 at 2227.956 kb on + strand, within Echvi_1899 at 2227.957 kb on - strand, within Echvi_1899 at 2227.957 kb on - strand, within Echvi_1899 at 2228.050 kb on - strand, within Echvi_1899 at 2228.054 kb on + strand, within Echvi_1899 at 2228.054 kb on + strand, within Echvi_1899 at 2228.054 kb on + strand, within Echvi_1899 at 2228.073 kb on + strand, within Echvi_1899 at 2228.073 kb on + strand, within Echvi_1899 at 2228.074 kb on - strand, within Echvi_1899 at 2228.077 kb on + strand, within Echvi_1899 at 2228.078 kb on - strand, within Echvi_1899 at 2228.103 kb on - strand, within Echvi_1899 at 2228.104 kb on + strand, within Echvi_1899 at 2228.104 kb on + strand, within Echvi_1899 at 2228.105 kb on - strand, within Echvi_1899 at 2228.139 kb on + strand, within Echvi_1899 at 2228.195 kb on + strand, within Echvi_1899 at 2228.195 kb on + strand, within Echvi_1899 at 2228.199 kb on - strand, within Echvi_1899 at 2228.199 kb on - strand, within Echvi_1899 at 2228.332 kb on - strand, within Echvi_1899 at 2228.347 kb on - strand, within Echvi_1899 at 2228.360 kb on - strand, within Echvi_1899 at 2228.396 kb on - strand, within Echvi_1899 at 2228.416 kb on - strand, within Echvi_1899 at 2228.433 kb on + strand, within Echvi_1899 at 2228.452 kb on + strand, within Echvi_1899 at 2228.453 kb on - strand, within Echvi_1899 at 2228.453 kb on - strand, within Echvi_1899 at 2228.530 kb on - strand, within Echvi_1899 at 2228.540 kb on + strand, within Echvi_1899 at 2228.540 kb on + strand, within Echvi_1899 at 2228.540 kb on + strand, within Echvi_1899 at 2228.541 kb on - strand, within Echvi_1899 at 2228.541 kb on - strand, within Echvi_1899 at 2228.542 kb on + strand, within Echvi_1899 at 2228.543 kb on - strand, within Echvi_1899 at 2228.543 kb on - strand, within Echvi_1899 at 2228.543 kb on - strand, within Echvi_1899 at 2228.548 kb on + strand, within Echvi_1899 at 2228.576 kb on + strand, within Echvi_1899 at 2228.638 kb on + strand at 2228.639 kb on - strand at 2228.673 kb on + strand at 2228.769 kb on + strand at 2228.769 kb on + strand at 2228.770 kb on - strand at 2228.770 kb on - strand at 2228.820 kb on - strand at 2228.886 kb on + strand at 2228.961 kb on + strand at 2229.012 kb on - strand at 2229.025 kb on + strand at 2229.031 kb on + strand at 2229.031 kb on + strand at 2229.031 kb on + strand at 2229.031 kb on + strand at 2229.034 kb on + strand at 2229.034 kb on + strand at 2229.034 kb on + strand at 2229.035 kb on - strand at 2229.035 kb on - strand at 2229.035 kb on - strand at 2229.037 kb on + strand at 2229.037 kb on + strand at 2229.040 kb on + strand at 2229.093 kb on + strand at 2229.094 kb on - strand at 2229.094 kb on - strand at 2229.094 kb on - strand at 2229.148 kb on - strand at 2229.165 kb on + strand at 2229.165 kb on + strand at 2229.165 kb on + strand at 2229.166 kb on - strand at 2229.166 kb on - strand at 2229.196 kb on - strand, within Echvi_1900 at 2229.247 kb on - strand, within Echvi_1900 at 2229.275 kb on + strand, within Echvi_1900 at 2229.275 kb on + strand, within Echvi_1900 at 2229.280 kb on + strand, within Echvi_1900 at 2229.281 kb on - strand, within Echvi_1900 at 2229.281 kb on - strand, within Echvi_1900 at 2229.293 kb on + strand, within Echvi_1900 at 2229.412 kb on - strand, within Echvi_1900 at 2229.501 kb on + strand at 2229.553 kb on + strand at 2229.631 kb on + strand at 2229.681 kb on + strand at 2229.722 kb on + strand at 2229.722 kb on + strand at 2229.722 kb on + strand at 2229.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM remove 2,225,920 - Echvi_1898 0.49 +0.1 2,226,003 + -0.7 2,226,004 - Echvi_1898 0.54 -0.1 2,226,041 - Echvi_1898 0.56 -1.6 2,226,042 + Echvi_1898 0.56 +1.9 2,226,043 - Echvi_1898 0.56 -2.2 2,226,071 + Echvi_1898 0.57 +0.9 2,226,081 + Echvi_1898 0.58 -0.8 2,226,150 - Echvi_1898 0.61 +1.6 2,226,239 + Echvi_1898 0.66 -0.4 2,226,239 + Echvi_1898 0.66 +0.3 2,226,252 - Echvi_1898 0.67 +1.5 2,226,275 + Echvi_1898 0.68 -1.5 2,226,275 + Echvi_1898 0.68 -0.7 2,226,375 - Echvi_1898 0.74 +0.5 2,226,443 - Echvi_1898 0.77 +0.1 2,226,506 + Echvi_1898 0.81 +0.0 2,226,540 - Echvi_1898 0.83 -1.7 2,226,589 - Echvi_1898 0.85 -0.2 2,226,630 - Echvi_1898 0.88 -0.2 2,226,636 + Echvi_1898 0.88 -0.7 2,226,749 - +0.1 2,226,781 - -0.6 2,226,781 - -0.3 2,226,836 - +1.4 2,226,885 + -0.5 2,226,885 + -0.3 2,226,885 + -1.1 2,226,918 - +1.6 2,226,921 + +2.9 2,226,922 - +1.1 2,226,940 + +0.3 2,226,941 - +1.7 2,226,945 + -0.6 2,226,950 + +0.9 2,226,954 - +1.2 2,226,954 - +0.4 2,226,954 - +0.9 2,226,959 + -1.9 2,226,960 - +1.4 2,226,960 - +1.9 2,226,965 + -1.1 2,226,965 + -1.1 2,226,966 - +0.9 2,226,990 - +2.0 2,227,009 - +1.9 2,227,028 + -0.1 2,227,029 - +1.2 2,227,030 + -2.4 2,227,030 + +0.9 2,227,031 - +1.4 2,227,182 - Echvi_1899 0.15 +1.1 2,227,203 - Echvi_1899 0.16 +2.3 2,227,209 - Echvi_1899 0.17 +0.6 2,227,229 + Echvi_1899 0.18 -1.0 2,227,252 + Echvi_1899 0.19 -1.1 2,227,358 - Echvi_1899 0.25 +0.3 2,227,358 - Echvi_1899 0.25 +1.3 2,227,359 + Echvi_1899 0.25 -0.1 2,227,365 - Echvi_1899 0.25 +1.3 2,227,365 - Echvi_1899 0.25 +2.0 2,227,463 + Echvi_1899 0.30 -1.2 2,227,464 - Echvi_1899 0.30 +0.8 2,227,464 - Echvi_1899 0.30 +1.1 2,227,464 - Echvi_1899 0.30 +1.4 2,227,464 - Echvi_1899 0.30 +1.5 2,227,464 - Echvi_1899 0.30 +0.8 2,227,464 - Echvi_1899 0.30 +0.8 2,227,480 + Echvi_1899 0.31 -2.0 2,227,488 - Echvi_1899 0.31 +0.7 2,227,521 + Echvi_1899 0.33 +1.5 2,227,558 - Echvi_1899 0.35 +0.1 2,227,588 - Echvi_1899 0.37 +0.5 2,227,644 + Echvi_1899 0.40 +0.3 2,227,655 - Echvi_1899 0.40 +0.1 2,227,655 - Echvi_1899 0.40 +2.1 2,227,680 + Echvi_1899 0.42 -0.5 2,227,707 + Echvi_1899 0.43 +0.9 2,227,708 - Echvi_1899 0.43 +2.0 2,227,713 + Echvi_1899 0.43 -0.1 2,227,713 + Echvi_1899 0.43 +2.1 2,227,714 - Echvi_1899 0.43 -0.1 2,227,714 - Echvi_1899 0.43 +0.6 2,227,764 - Echvi_1899 0.46 -0.4 2,227,813 + Echvi_1899 0.49 +3.7 2,227,814 - Echvi_1899 0.49 -1.7 2,227,814 - Echvi_1899 0.49 +0.5 2,227,821 - Echvi_1899 0.49 +0.0 2,227,821 - Echvi_1899 0.49 +0.1 2,227,891 - Echvi_1899 0.53 -0.1 2,227,900 + Echvi_1899 0.53 +0.3 2,227,901 - Echvi_1899 0.53 -2.0 2,227,901 - Echvi_1899 0.53 -0.5 2,227,901 - Echvi_1899 0.53 +0.3 2,227,903 - Echvi_1899 0.53 +0.9 2,227,934 + Echvi_1899 0.55 -2.5 2,227,954 + Echvi_1899 0.56 +0.2 2,227,954 + Echvi_1899 0.56 -0.1 2,227,954 + Echvi_1899 0.56 -0.9 2,227,955 - Echvi_1899 0.56 +0.4 2,227,955 - Echvi_1899 0.56 +2.3 2,227,955 - Echvi_1899 0.56 -0.5 2,227,956 + Echvi_1899 0.56 -0.9 2,227,956 + Echvi_1899 0.56 +0.5 2,227,957 - Echvi_1899 0.56 +2.3 2,227,957 - Echvi_1899 0.56 +0.1 2,228,050 - Echvi_1899 0.61 -0.1 2,228,054 + Echvi_1899 0.61 -0.4 2,228,054 + Echvi_1899 0.61 -0.0 2,228,054 + Echvi_1899 0.61 +0.3 2,228,073 + Echvi_1899 0.62 -0.7 2,228,073 + Echvi_1899 0.62 +1.4 2,228,074 - Echvi_1899 0.62 +0.1 2,228,077 + Echvi_1899 0.62 -0.7 2,228,078 - Echvi_1899 0.63 +0.3 2,228,103 - Echvi_1899 0.64 +0.9 2,228,104 + Echvi_1899 0.64 +0.2 2,228,104 + Echvi_1899 0.64 +0.7 2,228,105 - Echvi_1899 0.64 +1.4 2,228,139 + Echvi_1899 0.66 -0.4 2,228,195 + Echvi_1899 0.69 +0.4 2,228,195 + Echvi_1899 0.69 -1.5 2,228,199 - Echvi_1899 0.69 +0.9 2,228,199 - Echvi_1899 0.69 -0.7 2,228,332 - Echvi_1899 0.76 -1.1 2,228,347 - Echvi_1899 0.77 +0.5 2,228,360 - Echvi_1899 0.77 -0.7 2,228,396 - Echvi_1899 0.79 +0.5 2,228,416 - Echvi_1899 0.80 +0.4 2,228,433 + Echvi_1899 0.81 -0.9 2,228,452 + Echvi_1899 0.82 -1.1 2,228,453 - Echvi_1899 0.82 -2.2 2,228,453 - Echvi_1899 0.82 +0.1 2,228,530 - Echvi_1899 0.86 +2.2 2,228,540 + Echvi_1899 0.87 -0.1 2,228,540 + Echvi_1899 0.87 +0.9 2,228,540 + Echvi_1899 0.87 +1.5 2,228,541 - Echvi_1899 0.87 -2.2 2,228,541 - Echvi_1899 0.87 -0.9 2,228,542 + Echvi_1899 0.87 +0.7 2,228,543 - Echvi_1899 0.87 -1.1 2,228,543 - Echvi_1899 0.87 -1.2 2,228,543 - Echvi_1899 0.87 +2.3 2,228,548 + Echvi_1899 0.87 -0.2 2,228,576 + Echvi_1899 0.89 +0.8 2,228,638 + -1.2 2,228,639 - -1.3 2,228,673 + -0.6 2,228,769 + +1.1 2,228,769 + -0.9 2,228,770 - +0.4 2,228,770 - +0.6 2,228,820 - +0.5 2,228,886 + -0.7 2,228,961 + +0.6 2,229,012 - +1.9 2,229,025 + -0.7 2,229,031 + -0.1 2,229,031 + -0.1 2,229,031 + -0.6 2,229,031 + -0.1 2,229,034 + +1.2 2,229,034 + +0.1 2,229,034 + +0.5 2,229,035 - -0.4 2,229,035 - +0.6 2,229,035 - +0.3 2,229,037 + +0.1 2,229,037 + -0.2 2,229,040 + +1.7 2,229,093 + -0.6 2,229,094 - +0.9 2,229,094 - +0.4 2,229,094 - +1.1 2,229,148 - +0.9 2,229,165 + +0.1 2,229,165 + -1.2 2,229,165 + +0.3 2,229,166 - +0.6 2,229,166 - +0.9 2,229,196 - Echvi_1900 0.13 +0.7 2,229,247 - Echvi_1900 0.27 +0.6 2,229,275 + Echvi_1900 0.34 +0.1 2,229,275 + Echvi_1900 0.34 +0.3 2,229,280 + Echvi_1900 0.35 -0.3 2,229,281 - Echvi_1900 0.36 +1.9 2,229,281 - Echvi_1900 0.36 +0.3 2,229,293 + Echvi_1900 0.39 -0.1 2,229,412 - Echvi_1900 0.70 -0.5 2,229,501 + -0.3 2,229,553 + +0.3 2,229,631 + -0.1 2,229,681 + -1.7 2,229,722 + +1.3 2,229,722 + -0.8 2,229,722 + +2.3 2,229,723 - +0.5
Or see this region's nucleotide sequence