Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1446

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1445 and Echvi_1446 are separated by 313 nucleotidesEchvi_1446 and Echvi_1447 are separated by 19 nucleotidesEchvi_1447 and Echvi_1448 are separated by 262 nucleotides Echvi_1445: Echvi_1445 - peptide chain release factor 1, at 1,658,087 to 1,659,163 _1445 Echvi_1446: Echvi_1446 - Protein of unknown function (DUF3365)., at 1,659,477 to 1,660,130 _1446 Echvi_1447: Echvi_1447 - hypothetical protein, at 1,660,150 to 1,660,779 _1447 Echvi_1448: Echvi_1448 - 3-hydroxyanthranilate 3,4-dioxygenase, at 1,661,042 to 1,661,554 _1448 Position (kb) 1659 1660 1661Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1659.149 kb on + strandat 1659.164 kb on - strandat 1659.275 kb on + strandat 1659.354 kb on - strandat 1659.364 kb on + strandat 1659.446 kb on + strandat 1659.447 kb on - strandat 1659.459 kb on - strandat 1659.460 kb on + strandat 1659.461 kb on - strandat 1659.531 kb on - strandat 1659.690 kb on - strand, within Echvi_1446at 1659.728 kb on + strand, within Echvi_1446at 1659.850 kb on + strand, within Echvi_1446at 1659.864 kb on + strand, within Echvi_1446at 1659.865 kb on - strand, within Echvi_1446at 1659.865 kb on - strand, within Echvi_1446at 1659.933 kb on + strand, within Echvi_1446at 1659.933 kb on + strand, within Echvi_1446at 1659.934 kb on - strand, within Echvi_1446at 1659.934 kb on - strand, within Echvi_1446at 1659.935 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.033 kb on + strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.034 kb on - strand, within Echvi_1446at 1660.035 kb on + strand, within Echvi_1446at 1660.046 kb on + strand, within Echvi_1446at 1660.047 kb on - strand, within Echvi_1446at 1660.066 kb on + strandat 1660.067 kb on - strandat 1660.128 kb on + strandat 1660.216 kb on - strand, within Echvi_1447at 1660.237 kb on + strand, within Echvi_1447at 1660.409 kb on - strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.496 kb on + strand, within Echvi_1447at 1660.497 kb on - strand, within Echvi_1447at 1660.497 kb on - strand, within Echvi_1447at 1660.553 kb on + strand, within Echvi_1447at 1660.554 kb on - strand, within Echvi_1447at 1660.565 kb on - strand, within Echvi_1447at 1660.604 kb on - strand, within Echvi_1447at 1660.646 kb on - strand, within Echvi_1447at 1660.646 kb on - strand, within Echvi_1447at 1660.706 kb on + strand, within Echvi_1447at 1660.706 kb on + strand, within Echvi_1447at 1660.707 kb on - strand, within Echvi_1447at 1660.780 kb on + strandat 1660.781 kb on - strandat 1660.805 kb on - strandat 1660.805 kb on - strandat 1660.816 kb on + strandat 1660.817 kb on - strandat 1660.846 kb on + strandat 1660.847 kb on + strandat 1660.847 kb on + strandat 1660.848 kb on - strandat 1660.848 kb on - strandat 1660.851 kb on + strandat 1660.851 kb on + strandat 1660.851 kb on + strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.852 kb on - strandat 1660.859 kb on - strandat 1660.865 kb on + strandat 1660.896 kb on - strandat 1660.896 kb on - strandat 1660.906 kb on + strandat 1660.927 kb on + strandat 1660.927 kb on + strandat 1660.951 kb on - strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.961 kb on + strandat 1660.962 kb on - strandat 1661.130 kb on - strand, within Echvi_1448at 1661.130 kb on - strand, within Echvi_1448

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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1,659,149 + -0.3
1,659,164 - +1.0
1,659,275 + +0.3
1,659,354 - +1.4
1,659,364 + -1.2
1,659,446 + -2.6
1,659,447 - -0.2
1,659,459 - +0.1
1,659,460 + +1.5
1,659,461 - +1.3
1,659,531 - +0.8
1,659,690 - Echvi_1446 0.33 -0.1
1,659,728 + Echvi_1446 0.38 -0.0
1,659,850 + Echvi_1446 0.57 +0.3
1,659,864 + Echvi_1446 0.59 +0.0
1,659,865 - Echvi_1446 0.59 -0.6
1,659,865 - Echvi_1446 0.59 -0.4
1,659,933 + Echvi_1446 0.70 -2.8
1,659,933 + Echvi_1446 0.70 -0.6
1,659,934 - Echvi_1446 0.70 +1.4
1,659,934 - Echvi_1446 0.70 +0.2
1,659,935 + Echvi_1446 0.70 -0.9
1,660,033 + Echvi_1446 0.85 -2.9
1,660,033 + Echvi_1446 0.85 -2.1
1,660,033 + Echvi_1446 0.85 -0.5
1,660,033 + Echvi_1446 0.85 +0.7
1,660,033 + Echvi_1446 0.85 -0.2
1,660,034 - Echvi_1446 0.85 -0.7
1,660,034 - Echvi_1446 0.85 +0.5
1,660,034 - Echvi_1446 0.85 -1.5
1,660,034 - Echvi_1446 0.85 -1.0
1,660,034 - Echvi_1446 0.85 +1.3
1,660,034 - Echvi_1446 0.85 -0.7
1,660,035 + Echvi_1446 0.85 -1.9
1,660,046 + Echvi_1446 0.87 +0.5
1,660,047 - Echvi_1446 0.87 +0.3
1,660,066 + +0.1
1,660,067 - -1.5
1,660,128 + -0.6
1,660,216 - Echvi_1447 0.10 +0.6
1,660,237 + Echvi_1447 0.14 -0.4
1,660,409 - Echvi_1447 0.41 -0.5
1,660,496 + Echvi_1447 0.55 +1.4
1,660,496 + Echvi_1447 0.55 -0.2
1,660,496 + Echvi_1447 0.55 +0.1
1,660,496 + Echvi_1447 0.55 -0.9
1,660,496 + Echvi_1447 0.55 -0.6
1,660,497 - Echvi_1447 0.55 -0.3
1,660,497 - Echvi_1447 0.55 +0.3
1,660,553 + Echvi_1447 0.64 +0.7
1,660,554 - Echvi_1447 0.64 -0.2
1,660,565 - Echvi_1447 0.66 +0.7
1,660,604 - Echvi_1447 0.72 -0.4
1,660,646 - Echvi_1447 0.79 -0.9
1,660,646 - Echvi_1447 0.79 -1.7
1,660,706 + Echvi_1447 0.88 +2.2
1,660,706 + Echvi_1447 0.88 +1.0
1,660,707 - Echvi_1447 0.88 -2.1
1,660,780 + +0.2
1,660,781 - +2.4
1,660,805 - +1.0
1,660,805 - +0.3
1,660,816 + +0.2
1,660,817 - +1.2
1,660,846 + +1.4
1,660,847 + +1.4
1,660,847 + +0.4
1,660,848 - -0.5
1,660,848 - +1.7
1,660,851 + -0.5
1,660,851 + +0.7
1,660,851 + +0.4
1,660,852 - -0.9
1,660,852 - -0.8
1,660,852 - -3.1
1,660,852 - +1.9
1,660,852 - -0.3
1,660,859 - -0.2
1,660,865 + -0.0
1,660,896 - -1.5
1,660,896 - -0.7
1,660,906 + -0.3
1,660,927 + +0.6
1,660,927 + -0.0
1,660,951 - -0.6
1,660,961 + +0.5
1,660,961 + -1.1
1,660,961 + +0.9
1,660,961 + -0.7
1,660,962 - -0.0
1,661,130 - Echvi_1448 0.17 +1.0
1,661,130 - Echvi_1448 0.17 +1.5

Or see this region's nucleotide sequence