Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1278

Experiment: m.b. Aluminum chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1276 and Echvi_1277 are separated by 250 nucleotidesEchvi_1277 and Echvi_1278 are separated by 108 nucleotidesEchvi_1278 and Echvi_1279 are separated by 7 nucleotides Echvi_1276: Echvi_1276 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 1,464,489 to 1,465,415 _1276 Echvi_1277: Echvi_1277 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,465,666 to 1,466,169 _1277 Echvi_1278: Echvi_1278 - Periplasmic protease, at 1,466,278 to 1,467,450 _1278 Echvi_1279: Echvi_1279 - Glycerol kinase, at 1,467,458 to 1,468,960 _1279 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1465.405 kb on - strandat 1465.405 kb on - strandat 1465.442 kb on + strandat 1465.463 kb on + strandat 1465.464 kb on - strandat 1465.483 kb on + strandat 1465.483 kb on + strandat 1465.483 kb on + strandat 1465.484 kb on - strandat 1465.484 kb on - strandat 1465.487 kb on + strandat 1465.488 kb on - strandat 1465.488 kb on - strandat 1465.493 kb on + strandat 1465.494 kb on - strandat 1465.494 kb on - strandat 1465.495 kb on + strandat 1465.496 kb on - strandat 1465.496 kb on - strandat 1465.498 kb on + strandat 1465.498 kb on + strandat 1465.499 kb on - strandat 1465.539 kb on - strandat 1465.583 kb on + strandat 1465.587 kb on + strandat 1465.587 kb on + strandat 1465.587 kb on + strandat 1465.588 kb on - strandat 1465.588 kb on - strandat 1465.588 kb on - strandat 1465.590 kb on - strandat 1465.590 kb on - strandat 1465.590 kb on - strandat 1465.591 kb on + strandat 1465.591 kb on + strandat 1465.697 kb on - strandat 1465.697 kb on - strandat 1465.803 kb on + strand, within Echvi_1277at 1465.815 kb on - strand, within Echvi_1277at 1465.827 kb on - strand, within Echvi_1277at 1465.955 kb on + strand, within Echvi_1277at 1465.955 kb on + strand, within Echvi_1277at 1465.956 kb on - strand, within Echvi_1277at 1466.034 kb on + strand, within Echvi_1277at 1466.035 kb on - strand, within Echvi_1277at 1466.101 kb on + strand, within Echvi_1277at 1466.102 kb on - strand, within Echvi_1277at 1466.102 kb on - strand, within Echvi_1277at 1466.157 kb on - strandat 1466.157 kb on - strandat 1466.163 kb on + strandat 1466.163 kb on + strandat 1466.181 kb on - strandat 1466.191 kb on + strandat 1466.191 kb on + strandat 1466.194 kb on - strandat 1466.194 kb on - strandat 1466.194 kb on - strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.217 kb on + strandat 1466.218 kb on - strandat 1466.263 kb on - strandat 1466.300 kb on + strandat 1466.300 kb on + strandat 1466.319 kb on - strandat 1466.355 kb on + strandat 1466.355 kb on + strandat 1466.356 kb on - strandat 1466.356 kb on - strandat 1466.410 kb on + strand, within Echvi_1278at 1466.410 kb on + strand, within Echvi_1278at 1466.411 kb on - strand, within Echvi_1278at 1466.412 kb on + strand, within Echvi_1278at 1466.424 kb on + strand, within Echvi_1278at 1466.550 kb on + strand, within Echvi_1278at 1466.566 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.569 kb on + strand, within Echvi_1278at 1466.570 kb on - strand, within Echvi_1278at 1466.587 kb on + strand, within Echvi_1278at 1466.588 kb on - strand, within Echvi_1278at 1466.608 kb on + strand, within Echvi_1278at 1466.654 kb on - strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.665 kb on + strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.666 kb on - strand, within Echvi_1278at 1466.905 kb on - strand, within Echvi_1278at 1466.909 kb on - strand, within Echvi_1278at 1466.923 kb on - strand, within Echvi_1278at 1466.972 kb on - strand, within Echvi_1278at 1467.036 kb on + strand, within Echvi_1278at 1467.037 kb on - strand, within Echvi_1278at 1467.060 kb on + strand, within Echvi_1278at 1467.060 kb on + strand, within Echvi_1278at 1467.061 kb on - strand, within Echvi_1278at 1467.061 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.085 kb on - strand, within Echvi_1278at 1467.152 kb on + strand, within Echvi_1278at 1467.153 kb on - strand, within Echvi_1278at 1467.153 kb on - strand, within Echvi_1278at 1467.159 kb on + strand, within Echvi_1278at 1467.159 kb on + strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.160 kb on - strand, within Echvi_1278at 1467.163 kb on + strand, within Echvi_1278at 1467.163 kb on + strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.164 kb on - strand, within Echvi_1278at 1467.173 kb on + strand, within Echvi_1278at 1467.189 kb on + strand, within Echvi_1278at 1467.189 kb on + strand, within Echvi_1278at 1467.190 kb on - strand, within Echvi_1278at 1467.218 kb on + strand, within Echvi_1278at 1467.219 kb on - strand, within Echvi_1278at 1467.255 kb on + strand, within Echvi_1278at 1467.265 kb on - strand, within Echvi_1278at 1467.265 kb on - strand, within Echvi_1278at 1467.297 kb on + strand, within Echvi_1278at 1467.371 kb on - strandat 1467.444 kb on - strandat 1467.449 kb on - strandat 1467.505 kb on - strandat 1467.515 kb on + strandat 1467.616 kb on - strand, within Echvi_1279at 1467.922 kb on - strand, within Echvi_1279at 1468.050 kb on + strand, within Echvi_1279at 1468.050 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.088 kb on + strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.089 kb on - strand, within Echvi_1279at 1468.111 kb on + strand, within Echvi_1279at 1468.330 kb on + strand, within Echvi_1279at 1468.413 kb on + strand, within Echvi_1279at 1468.442 kb on + strand, within Echvi_1279

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
remove
1,465,405 - -0.3
1,465,405 - -0.0
1,465,442 + +0.1
1,465,463 + +0.4
1,465,464 - +2.5
1,465,483 + +0.8
1,465,483 + -0.3
1,465,483 + +1.0
1,465,484 - -0.5
1,465,484 - +1.0
1,465,487 + +0.4
1,465,488 - +0.6
1,465,488 - -1.7
1,465,493 + -0.8
1,465,494 - +0.5
1,465,494 - -1.3
1,465,495 + +0.6
1,465,496 - -0.1
1,465,496 - +1.7
1,465,498 + -0.7
1,465,498 + +1.6
1,465,499 - +0.7
1,465,539 - +1.0
1,465,583 + -0.9
1,465,587 + -0.6
1,465,587 + -0.8
1,465,587 + -0.1
1,465,588 - +0.4
1,465,588 - +0.4
1,465,588 - -0.6
1,465,590 - -0.0
1,465,590 - -1.6
1,465,590 - -0.5
1,465,591 + -0.7
1,465,591 + +1.1
1,465,697 - -0.0
1,465,697 - -0.3
1,465,803 + Echvi_1277 0.27 -1.9
1,465,815 - Echvi_1277 0.30 +1.1
1,465,827 - Echvi_1277 0.32 +2.0
1,465,955 + Echvi_1277 0.57 +0.6
1,465,955 + Echvi_1277 0.57 -0.6
1,465,956 - Echvi_1277 0.58 -1.5
1,466,034 + Echvi_1277 0.73 +0.8
1,466,035 - Echvi_1277 0.73 +1.4
1,466,101 + Echvi_1277 0.86 +0.6
1,466,102 - Echvi_1277 0.87 +0.3
1,466,102 - Echvi_1277 0.87 +0.8
1,466,157 - +1.2
1,466,157 - -1.8
1,466,163 + +2.0
1,466,163 + +0.0
1,466,181 - +0.8
1,466,191 + -0.2
1,466,191 + -0.7
1,466,194 - +1.4
1,466,194 - -0.6
1,466,194 - -2.2
1,466,217 + +0.6
1,466,217 + +0.7
1,466,217 + +0.6
1,466,217 + -0.3
1,466,218 - -1.0
1,466,263 - -3.1
1,466,300 + -0.3
1,466,300 + +0.9
1,466,319 - +0.3
1,466,355 + +0.5
1,466,355 + +0.8
1,466,356 - -0.7
1,466,356 - +2.0
1,466,410 + Echvi_1278 0.11 -0.6
1,466,410 + Echvi_1278 0.11 +1.2
1,466,411 - Echvi_1278 0.11 -2.8
1,466,412 + Echvi_1278 0.11 -1.3
1,466,424 + Echvi_1278 0.12 -0.6
1,466,550 + Echvi_1278 0.23 -1.1
1,466,566 + Echvi_1278 0.25 -0.3
1,466,569 + Echvi_1278 0.25 -0.1
1,466,569 + Echvi_1278 0.25 +0.3
1,466,569 + Echvi_1278 0.25 -0.8
1,466,570 - Echvi_1278 0.25 +0.3
1,466,587 + Echvi_1278 0.26 -0.6
1,466,588 - Echvi_1278 0.26 -0.4
1,466,608 + Echvi_1278 0.28 +1.5
1,466,654 - Echvi_1278 0.32 -1.3
1,466,665 + Echvi_1278 0.33 +1.3
1,466,665 + Echvi_1278 0.33 +0.2
1,466,665 + Echvi_1278 0.33 +0.3
1,466,666 - Echvi_1278 0.33 +0.2
1,466,666 - Echvi_1278 0.33 +0.8
1,466,666 - Echvi_1278 0.33 +1.3
1,466,905 - Echvi_1278 0.53 -0.0
1,466,909 - Echvi_1278 0.54 +1.5
1,466,923 - Echvi_1278 0.55 -1.0
1,466,972 - Echvi_1278 0.59 -0.6
1,467,036 + Echvi_1278 0.65 +1.6
1,467,037 - Echvi_1278 0.65 +0.1
1,467,060 + Echvi_1278 0.67 -1.2
1,467,060 + Echvi_1278 0.67 +1.2
1,467,061 - Echvi_1278 0.67 +0.5
1,467,061 - Echvi_1278 0.67 +3.0
1,467,085 - Echvi_1278 0.69 -1.6
1,467,085 - Echvi_1278 0.69 -0.6
1,467,085 - Echvi_1278 0.69 +2.2
1,467,152 + Echvi_1278 0.75 +0.4
1,467,153 - Echvi_1278 0.75 -1.7
1,467,153 - Echvi_1278 0.75 -0.7
1,467,159 + Echvi_1278 0.75 +0.3
1,467,159 + Echvi_1278 0.75 +0.0
1,467,160 - Echvi_1278 0.75 -0.4
1,467,160 - Echvi_1278 0.75 +1.7
1,467,160 - Echvi_1278 0.75 +0.5
1,467,163 + Echvi_1278 0.75 -0.6
1,467,163 + Echvi_1278 0.75 +0.2
1,467,164 - Echvi_1278 0.76 -0.3
1,467,164 - Echvi_1278 0.76 +0.8
1,467,164 - Echvi_1278 0.76 +0.7
1,467,164 - Echvi_1278 0.76 -0.5
1,467,164 - Echvi_1278 0.76 -0.0
1,467,173 + Echvi_1278 0.76 +0.8
1,467,189 + Echvi_1278 0.78 -1.2
1,467,189 + Echvi_1278 0.78 -0.1
1,467,190 - Echvi_1278 0.78 +0.1
1,467,218 + Echvi_1278 0.80 -0.7
1,467,219 - Echvi_1278 0.80 -2.1
1,467,255 + Echvi_1278 0.83 -0.2
1,467,265 - Echvi_1278 0.84 +0.2
1,467,265 - Echvi_1278 0.84 -1.0
1,467,297 + Echvi_1278 0.87 -2.0
1,467,371 - +0.8
1,467,444 - +0.4
1,467,449 - +0.1
1,467,505 - +0.7
1,467,515 + -0.0
1,467,616 - Echvi_1279 0.11 +0.6
1,467,922 - Echvi_1279 0.31 +0.1
1,468,050 + Echvi_1279 0.39 -0.9
1,468,050 + Echvi_1279 0.39 -1.8
1,468,088 + Echvi_1279 0.42 +0.5
1,468,088 + Echvi_1279 0.42 +0.2
1,468,088 + Echvi_1279 0.42 -0.9
1,468,088 + Echvi_1279 0.42 -0.0
1,468,088 + Echvi_1279 0.42 +0.4
1,468,089 - Echvi_1279 0.42 -0.1
1,468,089 - Echvi_1279 0.42 +0.1
1,468,089 - Echvi_1279 0.42 -1.7
1,468,089 - Echvi_1279 0.42 -0.2
1,468,089 - Echvi_1279 0.42 +0.1
1,468,111 + Echvi_1279 0.43 -1.9
1,468,330 + Echvi_1279 0.58 +0.6
1,468,413 + Echvi_1279 0.64 -0.7
1,468,442 + Echvi_1279 0.65 -0.3

Or see this region's nucleotide sequence