Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1263

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1262 and Echvi_1263 are separated by 2 nucleotidesEchvi_1263 and Echvi_1264 are separated by 312 nucleotidesEchvi_1264 and Echvi_1265 are separated by 226 nucleotides Echvi_1262: Echvi_1262 - asparagine synthase (glutamine-hydrolyzing), at 1,447,288 to 1,449,084 _1262 Echvi_1263: Echvi_1263 - endonuclease III, at 1,449,087 to 1,449,770 _1263 Echvi_1264: Echvi_1264 - hypothetical protein, at 1,450,083 to 1,450,205 _1264 Echvi_1265: Echvi_1265 - hypothetical protein, at 1,450,432 to 1,450,554 _1265 Position (kb) 1449 1450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1448.100 kb on + strand, within Echvi_1262at 1448.102 kb on + strand, within Echvi_1262at 1448.103 kb on - strand, within Echvi_1262at 1448.103 kb on - strand, within Echvi_1262at 1448.216 kb on + strand, within Echvi_1262at 1448.217 kb on - strand, within Echvi_1262at 1448.217 kb on - strand, within Echvi_1262at 1448.217 kb on - strand, within Echvi_1262at 1448.245 kb on - strand, within Echvi_1262at 1448.311 kb on + strand, within Echvi_1262at 1448.311 kb on + strand, within Echvi_1262at 1448.311 kb on + strand, within Echvi_1262at 1448.312 kb on - strand, within Echvi_1262at 1448.332 kb on - strand, within Echvi_1262at 1448.355 kb on + strand, within Echvi_1262at 1448.356 kb on - strand, within Echvi_1262at 1448.402 kb on - strand, within Echvi_1262at 1448.424 kb on + strand, within Echvi_1262at 1448.424 kb on + strand, within Echvi_1262at 1448.425 kb on - strand, within Echvi_1262at 1448.442 kb on + strand, within Echvi_1262at 1448.443 kb on - strand, within Echvi_1262at 1448.443 kb on - strand, within Echvi_1262at 1448.532 kb on + strand, within Echvi_1262at 1448.532 kb on + strand, within Echvi_1262at 1448.533 kb on - strand, within Echvi_1262at 1448.533 kb on - strand, within Echvi_1262at 1448.533 kb on - strand, within Echvi_1262at 1448.534 kb on + strand, within Echvi_1262at 1448.535 kb on - strand, within Echvi_1262at 1448.540 kb on + strand, within Echvi_1262at 1448.540 kb on + strand, within Echvi_1262at 1448.541 kb on - strand, within Echvi_1262at 1448.541 kb on - strand, within Echvi_1262at 1448.642 kb on + strand, within Echvi_1262at 1448.643 kb on - strand, within Echvi_1262at 1448.643 kb on - strand, within Echvi_1262at 1448.643 kb on - strand, within Echvi_1262at 1448.643 kb on - strand, within Echvi_1262at 1448.645 kb on + strand, within Echvi_1262at 1448.720 kb on + strand, within Echvi_1262at 1448.720 kb on + strand, within Echvi_1262at 1448.721 kb on - strand, within Echvi_1262at 1448.777 kb on - strand, within Echvi_1262at 1448.779 kb on + strand, within Echvi_1262at 1448.779 kb on + strand, within Echvi_1262at 1448.852 kb on + strand, within Echvi_1262at 1448.852 kb on + strand, within Echvi_1262at 1448.852 kb on + strand, within Echvi_1262at 1448.853 kb on - strand, within Echvi_1262at 1448.853 kb on - strand, within Echvi_1262at 1449.012 kb on + strandat 1449.013 kb on - strandat 1449.013 kb on - strandat 1449.124 kb on - strandat 1449.124 kb on - strandat 1449.124 kb on - strandat 1449.145 kb on + strandat 1449.145 kb on + strandat 1449.146 kb on - strandat 1449.146 kb on - strandat 1449.149 kb on - strandat 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.204 kb on + strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.205 kb on - strand, within Echvi_1263at 1449.208 kb on + strand, within Echvi_1263at 1449.285 kb on + strand, within Echvi_1263at 1449.365 kb on + strand, within Echvi_1263at 1449.365 kb on + strand, within Echvi_1263at 1449.365 kb on + strand, within Echvi_1263at 1449.365 kb on + strand, within Echvi_1263at 1449.366 kb on - strand, within Echvi_1263at 1449.366 kb on - strand, within Echvi_1263at 1449.366 kb on - strand, within Echvi_1263at 1449.366 kb on - strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.368 kb on + strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.369 kb on - strand, within Echvi_1263at 1449.543 kb on - strand, within Echvi_1263at 1449.544 kb on + strand, within Echvi_1263at 1449.545 kb on - strand, within Echvi_1263at 1449.545 kb on - strand, within Echvi_1263at 1449.566 kb on + strand, within Echvi_1263at 1449.567 kb on - strand, within Echvi_1263at 1449.567 kb on - strand, within Echvi_1263at 1449.623 kb on + strand, within Echvi_1263at 1449.655 kb on - strand, within Echvi_1263at 1449.655 kb on - strand, within Echvi_1263at 1449.655 kb on - strand, within Echvi_1263at 1449.655 kb on - strand, within Echvi_1263at 1449.719 kb on + strandat 1449.719 kb on + strandat 1449.720 kb on - strandat 1449.720 kb on - strandat 1449.741 kb on - strandat 1449.741 kb on - strandat 1449.741 kb on - strandat 1449.741 kb on - strandat 1449.842 kb on - strandat 1449.865 kb on - strandat 1449.946 kb on + strandat 1449.970 kb on + strandat 1449.971 kb on - strandat 1449.971 kb on - strandat 1450.139 kb on + strand, within Echvi_1264at 1450.189 kb on - strand, within Echvi_1264at 1450.189 kb on - strand, within Echvi_1264at 1450.191 kb on - strand, within Echvi_1264at 1450.203 kb on + strandat 1450.234 kb on + strandat 1450.234 kb on + strandat 1450.312 kb on - strandat 1450.320 kb on - strandat 1450.470 kb on + strand, within Echvi_1265at 1450.537 kb on + strand, within Echvi_1265at 1450.537 kb on + strand, within Echvi_1265at 1450.537 kb on + strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.538 kb on - strand, within Echvi_1265at 1450.539 kb on + strand, within Echvi_1265at 1450.539 kb on + strand, within Echvi_1265at 1450.615 kb on + strandat 1450.639 kb on - strandat 1450.639 kb on - strandat 1450.644 kb on + strandat 1450.645 kb on - strandat 1450.645 kb on - strandat 1450.651 kb on - strandat 1450.668 kb on - strandat 1450.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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1,448,100 + Echvi_1262 0.45 -1.2
1,448,102 + Echvi_1262 0.45 +1.0
1,448,103 - Echvi_1262 0.45 +0.2
1,448,103 - Echvi_1262 0.45 -1.3
1,448,216 + Echvi_1262 0.52 +0.3
1,448,217 - Echvi_1262 0.52 +0.2
1,448,217 - Echvi_1262 0.52 +0.5
1,448,217 - Echvi_1262 0.52 -1.7
1,448,245 - Echvi_1262 0.53 +0.2
1,448,311 + Echvi_1262 0.57 -2.5
1,448,311 + Echvi_1262 0.57 +0.3
1,448,311 + Echvi_1262 0.57 +1.5
1,448,312 - Echvi_1262 0.57 +1.4
1,448,332 - Echvi_1262 0.58 -0.4
1,448,355 + Echvi_1262 0.59 +0.1
1,448,356 - Echvi_1262 0.59 -2.3
1,448,402 - Echvi_1262 0.62 -0.5
1,448,424 + Echvi_1262 0.63 +2.0
1,448,424 + Echvi_1262 0.63 -0.6
1,448,425 - Echvi_1262 0.63 -0.3
1,448,442 + Echvi_1262 0.64 +0.1
1,448,443 - Echvi_1262 0.64 +0.2
1,448,443 - Echvi_1262 0.64 +0.3
1,448,532 + Echvi_1262 0.69 -1.0
1,448,532 + Echvi_1262 0.69 -0.8
1,448,533 - Echvi_1262 0.69 -0.8
1,448,533 - Echvi_1262 0.69 -0.6
1,448,533 - Echvi_1262 0.69 +0.7
1,448,534 + Echvi_1262 0.69 +1.0
1,448,535 - Echvi_1262 0.69 +1.3
1,448,540 + Echvi_1262 0.70 +2.4
1,448,540 + Echvi_1262 0.70 +1.1
1,448,541 - Echvi_1262 0.70 -0.3
1,448,541 - Echvi_1262 0.70 +3.0
1,448,642 + Echvi_1262 0.75 -0.0
1,448,643 - Echvi_1262 0.75 -0.3
1,448,643 - Echvi_1262 0.75 -1.6
1,448,643 - Echvi_1262 0.75 +0.8
1,448,643 - Echvi_1262 0.75 -1.4
1,448,645 + Echvi_1262 0.76 -2.3
1,448,720 + Echvi_1262 0.80 +0.7
1,448,720 + Echvi_1262 0.80 -0.3
1,448,721 - Echvi_1262 0.80 -1.2
1,448,777 - Echvi_1262 0.83 -0.9
1,448,779 + Echvi_1262 0.83 -0.0
1,448,779 + Echvi_1262 0.83 -0.6
1,448,852 + Echvi_1262 0.87 -0.9
1,448,852 + Echvi_1262 0.87 +0.8
1,448,852 + Echvi_1262 0.87 +0.6
1,448,853 - Echvi_1262 0.87 +0.4
1,448,853 - Echvi_1262 0.87 +0.4
1,449,012 + +0.9
1,449,013 - -0.2
1,449,013 - +1.0
1,449,124 - -0.4
1,449,124 - -0.9
1,449,124 - +0.3
1,449,145 + -0.8
1,449,145 + -0.2
1,449,146 - -2.1
1,449,146 - -1.4
1,449,149 - +0.6
1,449,204 + Echvi_1263 0.17 +0.1
1,449,204 + Echvi_1263 0.17 +0.2
1,449,204 + Echvi_1263 0.17 -0.9
1,449,204 + Echvi_1263 0.17 +1.4
1,449,204 + Echvi_1263 0.17 +0.3
1,449,204 + Echvi_1263 0.17 -0.1
1,449,204 + Echvi_1263 0.17 +0.9
1,449,204 + Echvi_1263 0.17 -0.7
1,449,205 - Echvi_1263 0.17 -0.3
1,449,205 - Echvi_1263 0.17 -0.2
1,449,205 - Echvi_1263 0.17 -1.2
1,449,205 - Echvi_1263 0.17 +0.2
1,449,205 - Echvi_1263 0.17 +0.7
1,449,205 - Echvi_1263 0.17 -1.3
1,449,205 - Echvi_1263 0.17 +1.3
1,449,205 - Echvi_1263 0.17 -0.9
1,449,205 - Echvi_1263 0.17 +0.1
1,449,208 + Echvi_1263 0.18 +0.2
1,449,285 + Echvi_1263 0.29 +0.7
1,449,365 + Echvi_1263 0.41 -2.8
1,449,365 + Echvi_1263 0.41 +1.1
1,449,365 + Echvi_1263 0.41 -1.0
1,449,365 + Echvi_1263 0.41 +0.4
1,449,366 - Echvi_1263 0.41 +1.7
1,449,366 - Echvi_1263 0.41 +1.2
1,449,366 - Echvi_1263 0.41 +0.5
1,449,366 - Echvi_1263 0.41 -0.2
1,449,368 + Echvi_1263 0.41 -0.0
1,449,368 + Echvi_1263 0.41 -0.5
1,449,368 + Echvi_1263 0.41 +2.0
1,449,368 + Echvi_1263 0.41 +1.2
1,449,368 + Echvi_1263 0.41 +3.0
1,449,368 + Echvi_1263 0.41 +1.5
1,449,369 - Echvi_1263 0.41 -2.0
1,449,369 - Echvi_1263 0.41 +1.2
1,449,369 - Echvi_1263 0.41 +1.3
1,449,369 - Echvi_1263 0.41 -1.3
1,449,369 - Echvi_1263 0.41 -0.9
1,449,369 - Echvi_1263 0.41 -0.6
1,449,369 - Echvi_1263 0.41 +3.0
1,449,369 - Echvi_1263 0.41 +2.0
1,449,369 - Echvi_1263 0.41 -1.7
1,449,369 - Echvi_1263 0.41 +1.6
1,449,369 - Echvi_1263 0.41 -0.3
1,449,369 - Echvi_1263 0.41 -0.6
1,449,543 - Echvi_1263 0.67 -2.5
1,449,544 + Echvi_1263 0.67 -0.3
1,449,545 - Echvi_1263 0.67 +1.3
1,449,545 - Echvi_1263 0.67 +0.9
1,449,566 + Echvi_1263 0.70 +1.3
1,449,567 - Echvi_1263 0.70 -0.4
1,449,567 - Echvi_1263 0.70 +0.4
1,449,623 + Echvi_1263 0.78 -0.7
1,449,655 - Echvi_1263 0.83 +3.4
1,449,655 - Echvi_1263 0.83 +0.6
1,449,655 - Echvi_1263 0.83 +0.1
1,449,655 - Echvi_1263 0.83 -0.3
1,449,719 + -0.2
1,449,719 + +2.2
1,449,720 - -1.3
1,449,720 - +1.4
1,449,741 - -0.6
1,449,741 - -2.7
1,449,741 - +0.3
1,449,741 - -0.7
1,449,842 - -0.4
1,449,865 - -0.6
1,449,946 + +1.0
1,449,970 + -1.2
1,449,971 - -0.1
1,449,971 - +0.2
1,450,139 + Echvi_1264 0.46 -1.8
1,450,189 - Echvi_1264 0.86 -0.1
1,450,189 - Echvi_1264 0.86 -0.2
1,450,191 - Echvi_1264 0.88 +1.0
1,450,203 + -0.3
1,450,234 + -0.7
1,450,234 + +1.0
1,450,312 - -0.4
1,450,320 - +1.4
1,450,470 + Echvi_1265 0.31 -0.7
1,450,537 + Echvi_1265 0.85 +1.4
1,450,537 + Echvi_1265 0.85 +0.5
1,450,537 + Echvi_1265 0.85 +1.1
1,450,538 - Echvi_1265 0.86 -0.4
1,450,538 - Echvi_1265 0.86 -0.2
1,450,538 - Echvi_1265 0.86 +1.3
1,450,538 - Echvi_1265 0.86 -1.3
1,450,538 - Echvi_1265 0.86 +1.4
1,450,538 - Echvi_1265 0.86 -0.0
1,450,539 + Echvi_1265 0.87 -0.3
1,450,539 + Echvi_1265 0.87 -0.3
1,450,615 + -1.9
1,450,639 - +0.2
1,450,639 - -1.1
1,450,644 + +0.8
1,450,645 - +0.4
1,450,645 - +0.5
1,450,651 - +0.2
1,450,668 - -1.0
1,450,668 - -1.0

Or see this region's nucleotide sequence