Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0444

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0442 and Echvi_0443 overlap by 26 nucleotidesEchvi_0443 and Echvi_0444 are separated by 33 nucleotidesEchvi_0444 and Echvi_0445 are separated by 46 nucleotides Echvi_0442: Echvi_0442 - Superfamily I DNA and RNA helicases, at 481,687 to 483,507 _0442 Echvi_0443: Echvi_0443 - hypothetical protein, at 483,482 to 483,580 _0443 Echvi_0444: Echvi_0444 - Superfamily II DNA/RNA helicases, SNF2 family, at 483,614 to 487,027 _0444 Echvi_0445: Echvi_0445 - HEPN domain., at 487,074 to 488,786 _0445 Position (kb) 483 484 485 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 482.628 kb on - strand, within Echvi_0442at 482.655 kb on - strand, within Echvi_0442at 482.740 kb on - strand, within Echvi_0442at 482.745 kb on + strand, within Echvi_0442at 482.763 kb on - strand, within Echvi_0442at 482.778 kb on - strand, within Echvi_0442at 482.802 kb on + strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.838 kb on - strand, within Echvi_0442at 482.852 kb on - strand, within Echvi_0442at 482.856 kb on + strand, within Echvi_0442at 482.927 kb on + strand, within Echvi_0442at 482.934 kb on + strand, within Echvi_0442at 482.935 kb on - strand, within Echvi_0442at 482.971 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.974 kb on - strand, within Echvi_0442at 482.977 kb on - strand, within Echvi_0442at 482.982 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.060 kb on + strand, within Echvi_0442at 483.066 kb on - strandat 483.104 kb on + strand, within Echvi_0442at 483.105 kb on - strand, within Echvi_0442at 483.126 kb on - strand, within Echvi_0442at 483.132 kb on + strand, within Echvi_0442at 483.204 kb on + strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.205 kb on - strand, within Echvi_0442at 483.207 kb on - strand, within Echvi_0442at 483.224 kb on + strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.267 kb on - strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.269 kb on + strand, within Echvi_0442at 483.273 kb on - strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.279 kb on + strand, within Echvi_0442at 483.280 kb on - strand, within Echvi_0442at 483.285 kb on + strand, within Echvi_0442at 483.315 kb on - strand, within Echvi_0442at 483.421 kb on + strandat 483.578 kb on + strandat 483.579 kb on - strandat 483.601 kb on - strandat 483.601 kb on - strandat 483.602 kb on + strandat 483.640 kb on + strandat 483.660 kb on - strandat 483.740 kb on - strandat 483.740 kb on - strandat 483.987 kb on + strandat 483.993 kb on + strand, within Echvi_0444at 483.994 kb on - strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.134 kb on + strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.135 kb on - strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.138 kb on + strand, within Echvi_0444at 484.139 kb on - strand, within Echvi_0444at 484.140 kb on + strand, within Echvi_0444at 484.141 kb on - strand, within Echvi_0444at 484.182 kb on - strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.207 kb on + strand, within Echvi_0444at 484.222 kb on + strand, within Echvi_0444at 484.266 kb on + strand, within Echvi_0444at 484.317 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.403 kb on + strand, within Echvi_0444at 484.404 kb on - strand, within Echvi_0444at 484.512 kb on + strand, within Echvi_0444at 484.514 kb on + strand, within Echvi_0444at 484.514 kb on + strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.515 kb on - strand, within Echvi_0444at 484.537 kb on + strand, within Echvi_0444at 484.537 kb on + strand, within Echvi_0444at 484.573 kb on + strand, within Echvi_0444at 484.584 kb on - strand, within Echvi_0444at 484.592 kb on - strand, within Echvi_0444at 484.592 kb on - strand, within Echvi_0444at 484.658 kb on - strand, within Echvi_0444at 484.686 kb on - strand, within Echvi_0444at 484.695 kb on + strand, within Echvi_0444at 484.695 kb on + strand, within Echvi_0444at 484.696 kb on - strand, within Echvi_0444at 484.696 kb on - strand, within Echvi_0444at 484.706 kb on - strand, within Echvi_0444at 484.758 kb on + strand, within Echvi_0444at 484.758 kb on + strand, within Echvi_0444at 484.759 kb on - strand, within Echvi_0444at 484.761 kb on + strand, within Echvi_0444at 484.762 kb on - strand, within Echvi_0444at 484.762 kb on - strand, within Echvi_0444at 484.762 kb on - strand, within Echvi_0444at 484.813 kb on + strand, within Echvi_0444at 484.814 kb on - strand, within Echvi_0444at 484.815 kb on + strand, within Echvi_0444at 484.815 kb on + strand, within Echvi_0444at 484.815 kb on + strand, within Echvi_0444at 484.816 kb on - strand, within Echvi_0444at 484.831 kb on + strand, within Echvi_0444at 485.121 kb on - strand, within Echvi_0444at 485.240 kb on + strand, within Echvi_0444at 485.241 kb on - strand, within Echvi_0444at 485.480 kb on - strand, within Echvi_0444at 485.483 kb on + strand, within Echvi_0444at 485.483 kb on + strand, within Echvi_0444at 485.483 kb on + strand, within Echvi_0444at 485.484 kb on - strand, within Echvi_0444at 485.491 kb on + strand, within Echvi_0444at 485.491 kb on + strand, within Echvi_0444at 485.491 kb on + strand, within Echvi_0444at 485.541 kb on - strand, within Echvi_0444at 485.595 kb on - strand, within Echvi_0444at 485.678 kb on + strand, within Echvi_0444at 485.678 kb on + strand, within Echvi_0444at 485.679 kb on - strand, within Echvi_0444at 485.679 kb on - strand, within Echvi_0444at 485.683 kb on - strand, within Echvi_0444at 485.796 kb on - strand, within Echvi_0444at 485.809 kb on + strand, within Echvi_0444at 485.865 kb on + strand, within Echvi_0444at 485.866 kb on - strand, within Echvi_0444at 485.866 kb on - strand, within Echvi_0444at 485.866 kb on - strand, within Echvi_0444at 485.867 kb on + strand, within Echvi_0444at 485.867 kb on + strand, within Echvi_0444at 485.867 kb on + strand, within Echvi_0444at 485.868 kb on - strand, within Echvi_0444at 485.909 kb on + strand, within Echvi_0444at 485.909 kb on + strand, within Echvi_0444at 485.910 kb on - strand, within Echvi_0444at 485.917 kb on + strand, within Echvi_0444at 485.917 kb on + strand, within Echvi_0444at 485.918 kb on - strand, within Echvi_0444at 486.113 kb on - strand, within Echvi_0444at 486.137 kb on + strand, within Echvi_0444at 486.137 kb on + strand, within Echvi_0444at 486.138 kb on - strand, within Echvi_0444at 486.139 kb on + strand, within Echvi_0444at 486.140 kb on - strand, within Echvi_0444at 486.163 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.174 kb on + strand, within Echvi_0444at 486.348 kb on - strand, within Echvi_0444at 486.401 kb on + strand, within Echvi_0444at 486.402 kb on - strand, within Echvi_0444at 486.572 kb on - strand, within Echvi_0444at 486.573 kb on + strand, within Echvi_0444at 486.573 kb on + strand, within Echvi_0444at 486.574 kb on - strand, within Echvi_0444at 486.602 kb on - strand, within Echvi_0444at 486.604 kb on + strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.605 kb on - strand, within Echvi_0444at 486.613 kb on - strand, within Echvi_0444at 486.617 kb on + strand, within Echvi_0444at 486.617 kb on + strand, within Echvi_0444at 486.625 kb on - strand, within Echvi_0444at 486.625 kb on - strand, within Echvi_0444at 486.673 kb on - strand, within Echvi_0444at 486.694 kb on - strandat 486.694 kb on - strandat 486.694 kb on - strandat 486.704 kb on + strandat 486.723 kb on + strandat 486.723 kb on + strandat 486.726 kb on + strandat 486.727 kb on - strandat 486.727 kb on - strandat 486.727 kb on - strandat 487.013 kb on - strandat 487.027 kb on + strandat 487.028 kb on - strandat 487.038 kb on - strandat 487.101 kb on + strandat 487.102 kb on - strandat 487.204 kb on + strandat 487.320 kb on + strand, within Echvi_0445at 487.358 kb on + strand, within Echvi_0445at 487.361 kb on - strand, within Echvi_0445at 487.370 kb on - strand, within Echvi_0445at 487.370 kb on - strand, within Echvi_0445at 487.376 kb on - strand, within Echvi_0445at 487.466 kb on - strand, within Echvi_0445at 487.529 kb on - strand, within Echvi_0445at 487.548 kb on - strand, within Echvi_0445at 487.704 kb on - strand, within Echvi_0445at 487.759 kb on + strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.760 kb on - strand, within Echvi_0445at 487.827 kb on - strand, within Echvi_0445at 487.837 kb on + strand, within Echvi_0445at 487.837 kb on + strand, within Echvi_0445at 487.838 kb on - strand, within Echvi_0445at 487.843 kb on + strand, within Echvi_0445at 487.844 kb on - strand, within Echvi_0445at 487.919 kb on + strand, within Echvi_0445at 487.925 kb on + strand, within Echvi_0445at 487.988 kb on + strand, within Echvi_0445at 487.988 kb on + strand, within Echvi_0445

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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482,628 - Echvi_0442 0.52 +0.5
482,655 - Echvi_0442 0.53 +0.6
482,740 - Echvi_0442 0.58 -0.6
482,745 + Echvi_0442 0.58 -0.1
482,763 - Echvi_0442 0.59 +0.1
482,778 - Echvi_0442 0.60 -1.4
482,802 + Echvi_0442 0.61 -0.9
482,838 - Echvi_0442 0.63 -1.6
482,838 - Echvi_0442 0.63 -1.0
482,838 - Echvi_0442 0.63 +0.2
482,852 - Echvi_0442 0.64 -0.4
482,856 + Echvi_0442 0.64 +0.6
482,927 + Echvi_0442 0.68 +0.5
482,934 + Echvi_0442 0.68 +0.7
482,935 - Echvi_0442 0.69 -0.7
482,971 - Echvi_0442 0.71 -1.2
482,974 - Echvi_0442 0.71 -0.5
482,974 - Echvi_0442 0.71 +1.3
482,974 - Echvi_0442 0.71 -0.9
482,977 - Echvi_0442 0.71 -0.1
482,982 + Echvi_0442 0.71 +1.1
483,060 + Echvi_0442 0.75 +0.5
483,060 + Echvi_0442 0.75 +0.1
483,066 - -0.4
483,104 + Echvi_0442 0.78 +1.9
483,105 - Echvi_0442 0.78 +1.7
483,126 - Echvi_0442 0.79 +0.8
483,132 + Echvi_0442 0.79 +0.9
483,204 + Echvi_0442 0.83 +0.4
483,205 - Echvi_0442 0.83 -1.1
483,205 - Echvi_0442 0.83 +1.5
483,207 - Echvi_0442 0.83 -1.0
483,224 + Echvi_0442 0.84 +1.5
483,267 - Echvi_0442 0.87 -0.2
483,267 - Echvi_0442 0.87 +0.9
483,267 - Echvi_0442 0.87 +0.7
483,267 - Echvi_0442 0.87 +0.9
483,269 + Echvi_0442 0.87 -0.9
483,269 + Echvi_0442 0.87 -0.0
483,273 - Echvi_0442 0.87 -0.6
483,279 + Echvi_0442 0.87 -1.0
483,279 + Echvi_0442 0.87 -1.1
483,280 - Echvi_0442 0.87 -0.9
483,285 + Echvi_0442 0.88 -0.3
483,315 - Echvi_0442 0.89 +1.1
483,421 + -0.8
483,578 + -0.9
483,579 - +0.2
483,601 - -0.8
483,601 - -0.4
483,602 + +0.3
483,640 + +0.8
483,660 - -0.3
483,740 - +0.3
483,740 - +0.7
483,987 + +0.9
483,993 + Echvi_0444 0.11 +1.3
483,994 - Echvi_0444 0.11 -0.6
484,134 + Echvi_0444 0.15 +0.3
484,134 + Echvi_0444 0.15 +0.5
484,134 + Echvi_0444 0.15 -0.2
484,135 - Echvi_0444 0.15 -1.2
484,135 - Echvi_0444 0.15 -0.5
484,135 - Echvi_0444 0.15 +0.3
484,135 - Echvi_0444 0.15 -2.3
484,138 + Echvi_0444 0.15 +0.5
484,138 + Echvi_0444 0.15 -0.1
484,138 + Echvi_0444 0.15 -2.0
484,138 + Echvi_0444 0.15 -0.1
484,139 - Echvi_0444 0.15 -0.4
484,140 + Echvi_0444 0.15 -0.8
484,141 - Echvi_0444 0.15 +2.0
484,182 - Echvi_0444 0.17 -0.7
484,207 + Echvi_0444 0.17 -1.2
484,207 + Echvi_0444 0.17 -0.7
484,222 + Echvi_0444 0.18 -0.7
484,266 + Echvi_0444 0.19 -0.1
484,317 + Echvi_0444 0.21 -0.2
484,403 + Echvi_0444 0.23 +1.1
484,403 + Echvi_0444 0.23 -0.5
484,404 - Echvi_0444 0.23 +1.0
484,512 + Echvi_0444 0.26 -0.7
484,514 + Echvi_0444 0.26 -0.9
484,514 + Echvi_0444 0.26 +0.2
484,515 - Echvi_0444 0.26 +0.1
484,515 - Echvi_0444 0.26 -0.1
484,515 - Echvi_0444 0.26 -1.0
484,515 - Echvi_0444 0.26 -0.5
484,537 + Echvi_0444 0.27 -1.4
484,537 + Echvi_0444 0.27 -0.4
484,573 + Echvi_0444 0.28 -2.8
484,584 - Echvi_0444 0.28 +0.6
484,592 - Echvi_0444 0.29 -0.8
484,592 - Echvi_0444 0.29 -0.1
484,658 - Echvi_0444 0.31 -0.7
484,686 - Echvi_0444 0.31 -2.1
484,695 + Echvi_0444 0.32 -0.9
484,695 + Echvi_0444 0.32 -0.5
484,696 - Echvi_0444 0.32 -1.3
484,696 - Echvi_0444 0.32 -0.5
484,706 - Echvi_0444 0.32 -0.1
484,758 + Echvi_0444 0.34 -2.7
484,758 + Echvi_0444 0.34 -0.4
484,759 - Echvi_0444 0.34 +0.2
484,761 + Echvi_0444 0.34 -0.4
484,762 - Echvi_0444 0.34 -0.4
484,762 - Echvi_0444 0.34 -0.5
484,762 - Echvi_0444 0.34 +0.9
484,813 + Echvi_0444 0.35 -1.1
484,814 - Echvi_0444 0.35 +0.2
484,815 + Echvi_0444 0.35 -0.1
484,815 + Echvi_0444 0.35 +1.1
484,815 + Echvi_0444 0.35 +0.3
484,816 - Echvi_0444 0.35 +1.1
484,831 + Echvi_0444 0.36 +0.1
485,121 - Echvi_0444 0.44 +0.1
485,240 + Echvi_0444 0.48 +2.3
485,241 - Echvi_0444 0.48 -0.1
485,480 - Echvi_0444 0.55 +1.1
485,483 + Echvi_0444 0.55 -0.7
485,483 + Echvi_0444 0.55 -1.2
485,483 + Echvi_0444 0.55 -1.1
485,484 - Echvi_0444 0.55 +0.3
485,491 + Echvi_0444 0.55 -0.9
485,491 + Echvi_0444 0.55 +0.1
485,491 + Echvi_0444 0.55 +0.5
485,541 - Echvi_0444 0.56 -0.7
485,595 - Echvi_0444 0.58 +0.8
485,678 + Echvi_0444 0.60 -0.2
485,678 + Echvi_0444 0.60 -0.0
485,679 - Echvi_0444 0.60 -0.9
485,679 - Echvi_0444 0.60 -3.3
485,683 - Echvi_0444 0.61 +0.0
485,796 - Echvi_0444 0.64 -0.9
485,809 + Echvi_0444 0.64 +0.7
485,865 + Echvi_0444 0.66 -1.1
485,866 - Echvi_0444 0.66 -0.2
485,866 - Echvi_0444 0.66 -0.0
485,866 - Echvi_0444 0.66 +0.5
485,867 + Echvi_0444 0.66 -2.2
485,867 + Echvi_0444 0.66 -0.0
485,867 + Echvi_0444 0.66 +1.6
485,868 - Echvi_0444 0.66 +0.7
485,909 + Echvi_0444 0.67 +0.7
485,909 + Echvi_0444 0.67 -1.5
485,910 - Echvi_0444 0.67 +1.3
485,917 + Echvi_0444 0.67 -0.1
485,917 + Echvi_0444 0.67 -0.5
485,918 - Echvi_0444 0.67 +0.9
486,113 - Echvi_0444 0.73 +1.5
486,137 + Echvi_0444 0.74 -0.9
486,137 + Echvi_0444 0.74 -1.5
486,138 - Echvi_0444 0.74 +0.9
486,139 + Echvi_0444 0.74 -0.9
486,140 - Echvi_0444 0.74 +0.2
486,163 + Echvi_0444 0.75 -0.7
486,174 + Echvi_0444 0.75 +0.1
486,174 + Echvi_0444 0.75 -3.2
486,174 + Echvi_0444 0.75 +0.3
486,174 + Echvi_0444 0.75 -2.1
486,348 - Echvi_0444 0.80 -0.5
486,401 + Echvi_0444 0.82 +0.5
486,402 - Echvi_0444 0.82 +0.9
486,572 - Echvi_0444 0.87 -1.2
486,573 + Echvi_0444 0.87 -0.7
486,573 + Echvi_0444 0.87 +0.1
486,574 - Echvi_0444 0.87 -0.7
486,602 - Echvi_0444 0.88 -0.0
486,604 + Echvi_0444 0.88 -0.1
486,605 - Echvi_0444 0.88 -1.1
486,605 - Echvi_0444 0.88 -0.0
486,605 - Echvi_0444 0.88 -0.5
486,613 - Echvi_0444 0.88 +1.1
486,617 + Echvi_0444 0.88 -0.2
486,617 + Echvi_0444 0.88 -1.5
486,625 - Echvi_0444 0.88 -0.2
486,625 - Echvi_0444 0.88 +0.7
486,673 - Echvi_0444 0.90 -0.7
486,694 - -0.4
486,694 - -0.7
486,694 - -0.5
486,704 + +0.2
486,723 + +0.7
486,723 + -0.3
486,726 + +3.5
486,727 - -0.8
486,727 - -0.3
486,727 - +0.3
487,013 - -0.2
487,027 + -0.2
487,028 - -0.7
487,038 - +0.6
487,101 + -0.5
487,102 - +0.9
487,204 + -1.4
487,320 + Echvi_0445 0.14 -0.5
487,358 + Echvi_0445 0.17 +1.4
487,361 - Echvi_0445 0.17 +0.9
487,370 - Echvi_0445 0.17 -1.5
487,370 - Echvi_0445 0.17 +0.9
487,376 - Echvi_0445 0.18 -1.0
487,466 - Echvi_0445 0.23 +0.3
487,529 - Echvi_0445 0.27 +1.2
487,548 - Echvi_0445 0.28 -0.8
487,704 - Echvi_0445 0.37 -1.0
487,759 + Echvi_0445 0.40 +2.4
487,760 - Echvi_0445 0.40 +1.9
487,760 - Echvi_0445 0.40 -0.4
487,760 - Echvi_0445 0.40 -2.0
487,827 - Echvi_0445 0.44 +0.5
487,837 + Echvi_0445 0.45 +0.8
487,837 + Echvi_0445 0.45 -0.2
487,838 - Echvi_0445 0.45 -0.6
487,843 + Echvi_0445 0.45 +2.7
487,844 - Echvi_0445 0.45 +0.9
487,919 + Echvi_0445 0.49 -0.6
487,925 + Echvi_0445 0.50 +0.9
487,988 + Echvi_0445 0.53 +1.7
487,988 + Echvi_0445 0.53 +0.3

Or see this region's nucleotide sequence