Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0435

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0433 and Echvi_0434 are separated by 3 nucleotidesEchvi_0434 and Echvi_0435 are separated by 23 nucleotidesEchvi_0435 and Echvi_0436 overlap by 11 nucleotidesEchvi_0436 and Echvi_0437 are separated by 101 nucleotides Echvi_0433: Echvi_0433 - hypothetical protein, at 474,584 to 474,754 _0433 Echvi_0434: Echvi_0434 - hypothetical protein, at 474,758 to 475,555 _0434 Echvi_0435: Echvi_0435 - Relaxase/Mobilisation nuclease domain., at 475,579 to 476,757 _0435 Echvi_0436: Echvi_0436 - Bacterial mobilisation protein (MobC)., at 476,747 to 477,091 _0436 Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056 _0437 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 474.584 kb on - strandat 474.729 kb on - strand, within Echvi_0433at 474.763 kb on + strandat 474.763 kb on + strandat 474.765 kb on + strandat 474.847 kb on + strand, within Echvi_0434at 474.847 kb on + strand, within Echvi_0434at 474.849 kb on + strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.896 kb on - strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.918 kb on + strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.929 kb on - strand, within Echvi_0434at 474.954 kb on - strand, within Echvi_0434at 474.968 kb on - strand, within Echvi_0434at 475.015 kb on + strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.048 kb on - strand, within Echvi_0434at 475.050 kb on - strand, within Echvi_0434at 475.057 kb on - strand, within Echvi_0434at 475.065 kb on - strand, within Echvi_0434at 475.150 kb on - strand, within Echvi_0434at 475.154 kb on + strand, within Echvi_0434at 475.155 kb on - strand, within Echvi_0434at 475.159 kb on - strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.204 kb on - strand, within Echvi_0434at 475.219 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.240 kb on - strand, within Echvi_0434at 475.247 kb on - strand, within Echvi_0434at 475.252 kb on - strand, within Echvi_0434at 475.287 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.317 kb on - strand, within Echvi_0434at 475.365 kb on + strand, within Echvi_0434at 475.373 kb on + strand, within Echvi_0434at 475.374 kb on - strand, within Echvi_0434at 475.377 kb on + strand, within Echvi_0434at 475.410 kb on - strand, within Echvi_0434at 475.431 kb on + strand, within Echvi_0434at 475.432 kb on - strand, within Echvi_0434at 475.435 kb on - strand, within Echvi_0434at 475.472 kb on + strand, within Echvi_0434at 475.539 kb on + strandat 475.543 kb on + strandat 475.544 kb on - strandat 475.544 kb on - strandat 475.569 kb on + strandat 475.581 kb on - strandat 475.584 kb on + strandat 475.584 kb on + strandat 475.636 kb on + strandat 475.680 kb on + strandat 475.680 kb on + strandat 475.681 kb on - strandat 475.681 kb on - strandat 475.711 kb on - strand, within Echvi_0435at 475.770 kb on + strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.889 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.087 kb on - strand, within Echvi_0435at 476.087 kb on - strand, within Echvi_0435at 476.201 kb on - strand, within Echvi_0435at 476.201 kb on - strand, within Echvi_0435at 476.210 kb on - strand, within Echvi_0435at 476.266 kb on - strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.319 kb on - strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.552 kb on - strand, within Echvi_0435at 476.556 kb on + strand, within Echvi_0435at 476.564 kb on + strand, within Echvi_0435at 476.565 kb on - strand, within Echvi_0435at 476.568 kb on + strand, within Echvi_0435at 476.593 kb on - strand, within Echvi_0435at 476.593 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.624 kb on - strand, within Echvi_0435at 476.701 kb on - strandat 476.707 kb on - strandat 476.707 kb on - strandat 476.722 kb on + strandat 476.723 kb on - strandat 476.724 kb on + strandat 476.763 kb on - strandat 476.768 kb on + strandat 476.768 kb on + strandat 476.875 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 476.898 kb on + strand, within Echvi_0436at 477.051 kb on - strand, within Echvi_0436at 477.181 kb on + strandat 477.183 kb on + strandat 477.195 kb on - strandat 477.246 kb on + strandat 477.248 kb on + strandat 477.294 kb on + strand, within Echvi_0437at 477.327 kb on + strand, within Echvi_0437at 477.327 kb on + strand, within Echvi_0437at 477.350 kb on - strand, within Echvi_0437at 477.365 kb on - strand, within Echvi_0437at 477.368 kb on - strand, within Echvi_0437at 477.452 kb on + strand, within Echvi_0437at 477.452 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.459 kb on + strand, within Echvi_0437at 477.460 kb on - strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.486 kb on + strand, within Echvi_0437at 477.487 kb on - strand, within Echvi_0437at 477.493 kb on + strand, within Echvi_0437at 477.515 kb on + strand, within Echvi_0437at 477.515 kb on + strand, within Echvi_0437at 477.516 kb on - strand, within Echvi_0437at 477.548 kb on + strand, within Echvi_0437at 477.549 kb on + strand, within Echvi_0437at 477.620 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.623 kb on + strand, within Echvi_0437at 477.624 kb on - strand, within Echvi_0437at 477.681 kb on - strand, within Echvi_0437at 477.727 kb on - strand, within Echvi_0437at 477.727 kb on - strand, within Echvi_0437

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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474,584 - +1.0
474,729 - Echvi_0433 0.85 +0.9
474,763 + +0.2
474,763 + -0.4
474,765 + -0.2
474,847 + Echvi_0434 0.11 -0.1
474,847 + Echvi_0434 0.11 +0.1
474,849 + Echvi_0434 0.11 -1.4
474,850 - Echvi_0434 0.12 -1.1
474,850 - Echvi_0434 0.12 -0.2
474,875 - Echvi_0434 0.15 +1.7
474,875 - Echvi_0434 0.15 -0.9
474,884 - Echvi_0434 0.16 -1.0
474,884 - Echvi_0434 0.16 +1.9
474,884 - Echvi_0434 0.16 +2.9
474,896 - Echvi_0434 0.17 +0.7
474,912 + Echvi_0434 0.19 -0.3
474,912 + Echvi_0434 0.19 -0.2
474,912 + Echvi_0434 0.19 +0.2
474,913 - Echvi_0434 0.19 +0.3
474,913 - Echvi_0434 0.19 +1.2
474,913 - Echvi_0434 0.19 +0.0
474,916 + Echvi_0434 0.20 +1.3
474,916 + Echvi_0434 0.20 +0.7
474,916 + Echvi_0434 0.20 +1.8
474,916 + Echvi_0434 0.20 -0.3
474,916 + Echvi_0434 0.20 -1.7
474,917 - Echvi_0434 0.20 +1.5
474,917 - Echvi_0434 0.20 -0.1
474,917 - Echvi_0434 0.20 -1.6
474,917 - Echvi_0434 0.20 +0.3
474,917 - Echvi_0434 0.20 -1.3
474,917 - Echvi_0434 0.20 -0.0
474,917 - Echvi_0434 0.20 +0.3
474,918 + Echvi_0434 0.20 -1.4
474,919 - Echvi_0434 0.20 +0.6
474,919 - Echvi_0434 0.20 -1.3
474,919 - Echvi_0434 0.20 -0.3
474,929 - Echvi_0434 0.21 -0.5
474,954 - Echvi_0434 0.25 -0.4
474,968 - Echvi_0434 0.26 -2.9
475,015 + Echvi_0434 0.32 -0.6
475,036 - Echvi_0434 0.35 +0.3
475,036 - Echvi_0434 0.35 -0.8
475,047 + Echvi_0434 0.36 -0.7
475,047 + Echvi_0434 0.36 +0.0
475,048 - Echvi_0434 0.36 -0.7
475,050 - Echvi_0434 0.37 -0.8
475,057 - Echvi_0434 0.37 -0.3
475,065 - Echvi_0434 0.38 -0.7
475,150 - Echvi_0434 0.49 +0.6
475,154 + Echvi_0434 0.50 -1.0
475,155 - Echvi_0434 0.50 +0.1
475,159 - Echvi_0434 0.50 +0.3
475,181 + Echvi_0434 0.53 -0.1
475,181 + Echvi_0434 0.53 -0.8
475,181 + Echvi_0434 0.53 -1.5
475,184 - Echvi_0434 0.53 +0.9
475,184 - Echvi_0434 0.53 -0.7
475,184 - Echvi_0434 0.53 +0.3
475,184 - Echvi_0434 0.53 -0.8
475,184 - Echvi_0434 0.53 -1.9
475,204 - Echvi_0434 0.56 +0.0
475,219 - Echvi_0434 0.58 -1.7
475,230 - Echvi_0434 0.59 +0.3
475,230 - Echvi_0434 0.59 -0.3
475,240 - Echvi_0434 0.60 -1.8
475,247 - Echvi_0434 0.61 +0.6
475,252 - Echvi_0434 0.62 -1.7
475,287 + Echvi_0434 0.66 +0.2
475,313 + Echvi_0434 0.70 -1.1
475,313 + Echvi_0434 0.70 +0.5
475,317 - Echvi_0434 0.70 -0.1
475,365 + Echvi_0434 0.76 -0.2
475,373 + Echvi_0434 0.77 -0.1
475,374 - Echvi_0434 0.77 -0.5
475,377 + Echvi_0434 0.78 -0.3
475,410 - Echvi_0434 0.82 -0.3
475,431 + Echvi_0434 0.84 -2.1
475,432 - Echvi_0434 0.84 +0.7
475,435 - Echvi_0434 0.85 -0.9
475,472 + Echvi_0434 0.89 +0.8
475,539 + +0.0
475,543 + -0.1
475,544 - -2.1
475,544 - -0.6
475,569 + -1.0
475,581 - -0.2
475,584 + -0.9
475,584 + -1.7
475,636 + +1.7
475,680 + -0.2
475,680 + +1.2
475,681 - +0.6
475,681 - -0.2
475,711 - Echvi_0435 0.11 -1.4
475,770 + Echvi_0435 0.16 +0.7
475,811 - Echvi_0435 0.20 +0.6
475,811 - Echvi_0435 0.20 -0.6
475,811 - Echvi_0435 0.20 +0.6
475,889 - Echvi_0435 0.26 +2.2
476,076 - Echvi_0435 0.42 +0.7
476,076 - Echvi_0435 0.42 +0.8
476,076 - Echvi_0435 0.42 +0.7
476,076 - Echvi_0435 0.42 +0.3
476,076 - Echvi_0435 0.42 -1.9
476,076 - Echvi_0435 0.42 +0.7
476,087 - Echvi_0435 0.43 -0.7
476,087 - Echvi_0435 0.43 +0.7
476,201 - Echvi_0435 0.53 +0.2
476,201 - Echvi_0435 0.53 -0.5
476,210 - Echvi_0435 0.54 -1.0
476,266 - Echvi_0435 0.58 +0.7
476,318 + Echvi_0435 0.63 +0.6
476,318 + Echvi_0435 0.63 +0.3
476,319 - Echvi_0435 0.63 -0.5
476,492 + Echvi_0435 0.77 +0.3
476,492 + Echvi_0435 0.77 -0.0
476,552 - Echvi_0435 0.83 +2.0
476,556 + Echvi_0435 0.83 +0.5
476,564 + Echvi_0435 0.84 -0.2
476,565 - Echvi_0435 0.84 +0.1
476,568 + Echvi_0435 0.84 -0.1
476,593 - Echvi_0435 0.86 -0.1
476,593 - Echvi_0435 0.86 -2.5
476,624 - Echvi_0435 0.89 +2.5
476,624 - Echvi_0435 0.89 -0.2
476,624 - Echvi_0435 0.89 -1.4
476,701 - -0.8
476,707 - -0.7
476,707 - -2.2
476,722 + +0.6
476,723 - -1.7
476,724 + -0.4
476,763 - -1.1
476,768 + -0.2
476,768 + +0.3
476,875 + Echvi_0436 0.37 +0.9
476,898 + Echvi_0436 0.44 +1.3
476,898 + Echvi_0436 0.44 +1.1
476,898 + Echvi_0436 0.44 -0.4
477,051 - Echvi_0436 0.88 +2.7
477,181 + -0.1
477,183 + +0.0
477,195 - +0.7
477,246 + -0.5
477,248 + -0.4
477,294 + Echvi_0437 0.12 +0.4
477,327 + Echvi_0437 0.16 -0.8
477,327 + Echvi_0437 0.16 +0.9
477,350 - Echvi_0437 0.18 -0.3
477,365 - Echvi_0437 0.20 +1.6
477,368 - Echvi_0437 0.20 +0.9
477,452 + Echvi_0437 0.30 -0.4
477,452 + Echvi_0437 0.30 -2.0
477,459 + Echvi_0437 0.31 -0.3
477,459 + Echvi_0437 0.31 -0.6
477,459 + Echvi_0437 0.31 +0.1
477,460 - Echvi_0437 0.31 -0.1
477,486 + Echvi_0437 0.34 +2.2
477,486 + Echvi_0437 0.34 -0.1
477,486 + Echvi_0437 0.34 -0.2
477,487 - Echvi_0437 0.34 +1.1
477,493 + Echvi_0437 0.35 -1.4
477,515 + Echvi_0437 0.37 +0.4
477,515 + Echvi_0437 0.37 +3.1
477,516 - Echvi_0437 0.37 -2.3
477,548 + Echvi_0437 0.41 +0.7
477,549 + Echvi_0437 0.41 +0.7
477,620 + Echvi_0437 0.49 -0.1
477,623 + Echvi_0437 0.50 +0.1
477,623 + Echvi_0437 0.50 -0.5
477,623 + Echvi_0437 0.50 +1.8
477,624 - Echvi_0437 0.50 +2.3
477,681 - Echvi_0437 0.56 +1.5
477,727 - Echvi_0437 0.62 +1.2
477,727 - Echvi_0437 0.62 +0.2

Or see this region's nucleotide sequence