Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0199

Experiment: m.b. Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0198 and Echvi_0199 are separated by 74 nucleotidesEchvi_0199 and Echvi_0200 are separated by 58 nucleotides Echvi_0198: Echvi_0198 - Coenzyme F390 synthetase, at 213,652 to 214,656 _0198 Echvi_0199: Echvi_0199 - hypothetical protein, at 214,731 to 215,405 _0199 Echvi_0200: Echvi_0200 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 215,464 to 217,878 _0200 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 213.756 kb on + strand, within Echvi_0198at 213.790 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.795 kb on + strand, within Echvi_0198at 213.798 kb on + strand, within Echvi_0198at 213.879 kb on - strand, within Echvi_0198at 213.900 kb on - strand, within Echvi_0198at 214.039 kb on + strand, within Echvi_0198at 214.175 kb on + strand, within Echvi_0198at 214.221 kb on + strand, within Echvi_0198at 214.268 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.313 kb on + strand, within Echvi_0198at 214.349 kb on + strand, within Echvi_0198at 214.405 kb on - strand, within Echvi_0198at 214.462 kb on - strand, within Echvi_0198at 214.495 kb on + strand, within Echvi_0198at 214.547 kb on + strand, within Echvi_0198at 214.548 kb on - strand, within Echvi_0198at 214.548 kb on - strand, within Echvi_0198at 214.554 kb on + strand, within Echvi_0198at 214.624 kb on + strandat 214.625 kb on - strandat 214.625 kb on - strandat 214.663 kb on - strandat 214.669 kb on + strandat 214.669 kb on + strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.670 kb on - strandat 214.672 kb on - strandat 214.707 kb on - strandat 214.714 kb on + strandat 214.714 kb on + strandat 214.715 kb on - strandat 214.718 kb on + strandat 214.719 kb on - strandat 214.719 kb on - strandat 214.746 kb on + strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.747 kb on - strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.752 kb on + strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.753 kb on - strandat 214.754 kb on + strandat 214.754 kb on + strandat 214.754 kb on + strandat 214.755 kb on - strandat 214.755 kb on - strandat 214.789 kb on + strandat 214.830 kb on + strand, within Echvi_0199at 214.830 kb on + strand, within Echvi_0199at 214.831 kb on - strand, within Echvi_0199at 214.846 kb on - strand, within Echvi_0199at 214.855 kb on + strand, within Echvi_0199at 214.855 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.882 kb on + strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.883 kb on - strand, within Echvi_0199at 214.889 kb on - strand, within Echvi_0199at 214.947 kb on + strand, within Echvi_0199at 214.948 kb on - strand, within Echvi_0199at 214.986 kb on + strand, within Echvi_0199at 214.987 kb on - strand, within Echvi_0199at 214.987 kb on - strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 214.988 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.025 kb on + strand, within Echvi_0199at 215.026 kb on - strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.054 kb on + strand, within Echvi_0199at 215.055 kb on - strand, within Echvi_0199at 215.100 kb on - strand, within Echvi_0199at 215.109 kb on + strand, within Echvi_0199at 215.112 kb on + strand, within Echvi_0199at 215.112 kb on + strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.113 kb on - strand, within Echvi_0199at 215.161 kb on - strand, within Echvi_0199at 215.184 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.187 kb on + strand, within Echvi_0199at 215.188 kb on - strand, within Echvi_0199at 215.245 kb on + strand, within Echvi_0199at 215.245 kb on + strand, within Echvi_0199at 215.262 kb on + strand, within Echvi_0199at 215.306 kb on + strand, within Echvi_0199at 215.306 kb on + strand, within Echvi_0199at 215.345 kb on + strandat 215.355 kb on - strandat 215.355 kb on - strandat 215.360 kb on + strandat 215.459 kb on + strandat 215.459 kb on + strandat 215.460 kb on - strandat 215.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
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213,756 + Echvi_0198 0.10 -2.6
213,790 + Echvi_0198 0.14 -0.4
213,795 + Echvi_0198 0.14 +0.6
213,795 + Echvi_0198 0.14 -0.6
213,798 + Echvi_0198 0.15 -0.1
213,879 - Echvi_0198 0.23 -2.9
213,900 - Echvi_0198 0.25 +0.6
214,039 + Echvi_0198 0.39 -0.0
214,175 + Echvi_0198 0.52 -0.2
214,221 + Echvi_0198 0.57 -0.5
214,268 + Echvi_0198 0.61 -1.3
214,313 + Echvi_0198 0.66 +0.2
214,313 + Echvi_0198 0.66 +0.2
214,349 + Echvi_0198 0.69 -0.9
214,405 - Echvi_0198 0.75 +0.2
214,462 - Echvi_0198 0.81 +2.2
214,495 + Echvi_0198 0.84 +0.1
214,547 + Echvi_0198 0.89 -1.1
214,548 - Echvi_0198 0.89 -0.1
214,548 - Echvi_0198 0.89 -0.1
214,554 + Echvi_0198 0.90 -0.8
214,624 + +0.1
214,625 - -0.3
214,625 - +0.1
214,663 - +0.3
214,669 + +0.1
214,669 + -1.4
214,670 - +0.4
214,670 - +0.7
214,670 - -0.1
214,670 - -0.1
214,670 - -0.2
214,672 - -0.4
214,707 - +0.0
214,714 + +0.2
214,714 + +0.1
214,715 - +1.7
214,718 + +1.6
214,719 - -0.6
214,719 - +1.1
214,746 + +0.8
214,747 - -0.8
214,747 - +1.3
214,747 - +0.6
214,747 - +0.5
214,752 + -0.0
214,752 + +0.2
214,752 + +0.5
214,752 + +0.8
214,753 - -0.0
214,753 - +1.9
214,753 - +1.8
214,753 - +0.4
214,753 - -0.4
214,753 - +0.9
214,754 + +1.5
214,754 + +0.8
214,754 + +1.3
214,755 - +1.9
214,755 - +0.2
214,789 + +0.9
214,830 + Echvi_0199 0.15 +1.5
214,830 + Echvi_0199 0.15 -1.9
214,831 - Echvi_0199 0.15 +0.8
214,846 - Echvi_0199 0.17 +0.3
214,855 + Echvi_0199 0.18 +1.1
214,855 + Echvi_0199 0.18 +1.9
214,882 + Echvi_0199 0.22 +0.8
214,882 + Echvi_0199 0.22 +1.0
214,882 + Echvi_0199 0.22 -0.2
214,883 - Echvi_0199 0.23 +0.5
214,883 - Echvi_0199 0.23 +0.8
214,883 - Echvi_0199 0.23 +0.9
214,889 - Echvi_0199 0.23 +0.4
214,947 + Echvi_0199 0.32 +0.8
214,948 - Echvi_0199 0.32 +0.9
214,986 + Echvi_0199 0.38 +0.6
214,987 - Echvi_0199 0.38 +0.5
214,987 - Echvi_0199 0.38 -0.4
214,988 + Echvi_0199 0.38 +1.2
214,988 + Echvi_0199 0.38 -0.9
214,988 + Echvi_0199 0.38 +0.3
215,025 + Echvi_0199 0.44 +0.2
215,025 + Echvi_0199 0.44 +1.6
215,025 + Echvi_0199 0.44 +0.9
215,026 - Echvi_0199 0.44 +0.9
215,054 + Echvi_0199 0.48 +1.3
215,054 + Echvi_0199 0.48 +0.2
215,054 + Echvi_0199 0.48 +2.3
215,054 + Echvi_0199 0.48 +0.1
215,055 - Echvi_0199 0.48 -0.5
215,100 - Echvi_0199 0.55 +0.3
215,109 + Echvi_0199 0.56 +0.7
215,112 + Echvi_0199 0.56 +1.0
215,112 + Echvi_0199 0.56 +1.3
215,113 - Echvi_0199 0.57 +0.1
215,113 - Echvi_0199 0.57 +1.0
215,113 - Echvi_0199 0.57 +0.1
215,161 - Echvi_0199 0.64 +0.8
215,184 + Echvi_0199 0.67 +0.7
215,187 + Echvi_0199 0.68 +1.0
215,187 + Echvi_0199 0.68 +1.7
215,187 + Echvi_0199 0.68 +2.5
215,188 - Echvi_0199 0.68 +0.7
215,245 + Echvi_0199 0.76 -1.3
215,245 + Echvi_0199 0.76 +0.9
215,262 + Echvi_0199 0.79 +0.9
215,306 + Echvi_0199 0.85 +0.4
215,306 + Echvi_0199 0.85 +2.8
215,345 + +0.7
215,355 - +0.5
215,355 - +2.0
215,360 + +1.1
215,459 + -0.4
215,459 + +0.4
215,460 - -0.4
215,460 - +0.2

Or see this region's nucleotide sequence