Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0119

Experiment: m.b. Aluminum chloride 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0118 and Echvi_0119 are separated by 17 nucleotidesEchvi_0119 and Echvi_0120 are separated by 546 nucleotides Echvi_0118: Echvi_0118 - Lysyl-tRNA synthetase (class II), at 116,469 to 118,187 _0118 Echvi_0119: Echvi_0119 - Proline dehydrogenase (EC 1.5.5.2) (from data), at 118,205 to 119,401 _0119 Echvi_0120: Echvi_0120 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (from data), at 119,948 to 121,051 _0120 Position (kb) 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 118.196 kb on - strandat 118.196 kb on - strandat 118.196 kb on - strandat 118.196 kb on - strandat 118.201 kb on - strandat 118.207 kb on - strandat 118.271 kb on - strandat 118.321 kb on - strandat 118.321 kb on - strandat 118.370 kb on - strand, within Echvi_0119at 118.370 kb on - strand, within Echvi_0119at 118.400 kb on - strand, within Echvi_0119at 118.400 kb on - strand, within Echvi_0119at 118.403 kb on - strand, within Echvi_0119at 118.417 kb on - strand, within Echvi_0119at 118.417 kb on - strand, within Echvi_0119at 118.432 kb on - strand, within Echvi_0119at 118.490 kb on - strand, within Echvi_0119at 118.568 kb on - strand, within Echvi_0119at 118.570 kb on - strand, within Echvi_0119at 118.570 kb on - strand, within Echvi_0119at 118.570 kb on - strand, within Echvi_0119at 118.570 kb on - strand, within Echvi_0119at 118.570 kb on - strand, within Echvi_0119at 118.583 kb on - strand, within Echvi_0119at 118.583 kb on - strand, within Echvi_0119at 118.654 kb on - strand, within Echvi_0119at 118.654 kb on - strand, within Echvi_0119at 118.654 kb on - strand, within Echvi_0119at 118.736 kb on - strand, within Echvi_0119at 118.760 kb on - strand, within Echvi_0119at 118.789 kb on - strand, within Echvi_0119at 118.789 kb on - strand, within Echvi_0119at 118.789 kb on - strand, within Echvi_0119at 118.789 kb on - strand, within Echvi_0119at 118.984 kb on - strand, within Echvi_0119at 119.006 kb on - strand, within Echvi_0119at 119.006 kb on - strand, within Echvi_0119at 119.058 kb on - strand, within Echvi_0119at 119.083 kb on - strand, within Echvi_0119at 119.208 kb on - strand, within Echvi_0119at 119.238 kb on - strand, within Echvi_0119at 119.249 kb on - strand, within Echvi_0119at 119.320 kb on - strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.500 kb on + strandat 119.519 kb on + strandat 119.528 kb on + strandat 119.528 kb on + strandat 119.528 kb on + strandat 119.529 kb on - strandat 119.529 kb on - strandat 119.530 kb on + strandat 119.530 kb on + strandat 119.530 kb on + strandat 119.531 kb on - strandat 119.569 kb on + strandat 119.570 kb on - strandat 119.613 kb on + strandat 119.613 kb on + strandat 119.696 kb on + strandat 119.738 kb on - strandat 119.757 kb on - strandat 119.858 kb on - strandat 120.020 kb on - strandat 120.020 kb on - strandat 120.043 kb on - strandat 120.202 kb on + strand, within Echvi_0120at 120.214 kb on - strand, within Echvi_0120at 120.238 kb on - strand, within Echvi_0120at 120.244 kb on - strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.255 kb on + strand, within Echvi_0120at 120.288 kb on + strand, within Echvi_0120at 120.346 kb on + strand, within Echvi_0120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 2 mM
remove
118,196 - -0.0
118,196 - -1.0
118,196 - +0.6
118,196 - +0.9
118,201 - -1.5
118,207 - +0.2
118,271 - -0.3
118,321 - +0.5
118,321 - -1.1
118,370 - Echvi_0119 0.14 +0.1
118,370 - Echvi_0119 0.14 +0.4
118,400 - Echvi_0119 0.16 +1.3
118,400 - Echvi_0119 0.16 +0.0
118,403 - Echvi_0119 0.17 +1.1
118,417 - Echvi_0119 0.18 -1.3
118,417 - Echvi_0119 0.18 +0.3
118,432 - Echvi_0119 0.19 +1.0
118,490 - Echvi_0119 0.24 +0.4
118,568 - Echvi_0119 0.30 -1.2
118,570 - Echvi_0119 0.30 +1.1
118,570 - Echvi_0119 0.30 +0.7
118,570 - Echvi_0119 0.30 +0.3
118,570 - Echvi_0119 0.30 +0.6
118,570 - Echvi_0119 0.30 +1.1
118,583 - Echvi_0119 0.32 +0.4
118,583 - Echvi_0119 0.32 +0.8
118,654 - Echvi_0119 0.38 +0.9
118,654 - Echvi_0119 0.38 +1.2
118,654 - Echvi_0119 0.38 +0.3
118,736 - Echvi_0119 0.44 +0.3
118,760 - Echvi_0119 0.46 +0.5
118,789 - Echvi_0119 0.49 +0.6
118,789 - Echvi_0119 0.49 +0.1
118,789 - Echvi_0119 0.49 -0.0
118,789 - Echvi_0119 0.49 +0.6
118,984 - Echvi_0119 0.65 -0.0
119,006 - Echvi_0119 0.67 +0.1
119,006 - Echvi_0119 0.67 +1.4
119,058 - Echvi_0119 0.71 +0.7
119,083 - Echvi_0119 0.73 +0.6
119,208 - Echvi_0119 0.84 +1.1
119,238 - Echvi_0119 0.86 +0.6
119,249 - Echvi_0119 0.87 +0.8
119,320 - +2.2
119,500 + -0.4
119,500 + +0.6
119,500 + +0.4
119,500 + -0.0
119,500 + +0.1
119,519 + -0.9
119,528 + +0.5
119,528 + +1.6
119,528 + -1.1
119,529 - -0.0
119,529 - +1.2
119,530 + -0.2
119,530 + +0.3
119,530 + +0.3
119,531 - +0.8
119,569 + +1.1
119,570 - -2.7
119,613 + +1.9
119,613 + -0.1
119,696 + +0.3
119,738 - -2.4
119,757 - -0.3
119,858 - -1.1
120,020 - -0.3
120,020 - -0.6
120,043 - +0.1
120,202 + Echvi_0120 0.23 -0.5
120,214 - Echvi_0120 0.24 +1.3
120,238 - Echvi_0120 0.26 -0.1
120,244 - Echvi_0120 0.27 +1.3
120,255 + Echvi_0120 0.28 -1.7
120,255 + Echvi_0120 0.28 +0.9
120,288 + Echvi_0120 0.31 -0.8
120,346 + Echvi_0120 0.36 -0.3

Or see this region's nucleotide sequence