Experiment: D-Quinic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3727 and Atu3728 are separated by 197 nucleotides Atu3728 and Atu3729 are separated by 36 nucleotides Atu3729 and Atu3730 are separated by 304 nucleotides
Atu3727: Atu3727 - hypothetical protein, at 808,406 to 809,152
Atu3727
Atu3728: Atu3728 - hypothetical protein, at 809,350 to 809,853
Atu3728
Atu3729: Atu3729 - hypothetical protein, at 809,890 to 810,543
Atu3729
Atu3730: Atu3730 - hypothetical protein, at 810,848 to 811,672
Atu3730
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.949 kb on + strand, within Atu3727 at 809.245 kb on + strand at 809.280 kb on + strand at 809.291 kb on + strand at 809.386 kb on + strand at 809.411 kb on - strand, within Atu3728 at 809.458 kb on - strand, within Atu3728 at 809.458 kb on - strand, within Atu3728 at 809.460 kb on + strand, within Atu3728 at 809.481 kb on + strand, within Atu3728 at 809.562 kb on + strand, within Atu3728 at 809.570 kb on - strand, within Atu3728 at 809.570 kb on - strand, within Atu3728 at 809.675 kb on + strand, within Atu3728 at 809.675 kb on + strand, within Atu3728 at 809.683 kb on - strand, within Atu3728 at 809.693 kb on - strand, within Atu3728 at 809.694 kb on - strand, within Atu3728 at 809.757 kb on - strand, within Atu3728 at 809.986 kb on + strand, within Atu3729 at 810.038 kb on + strand, within Atu3729 at 810.046 kb on - strand, within Atu3729 at 810.066 kb on + strand, within Atu3729 at 810.071 kb on + strand, within Atu3729 at 810.074 kb on - strand, within Atu3729 at 810.298 kb on + strand, within Atu3729 at 810.315 kb on + strand, within Atu3729 at 810.320 kb on + strand, within Atu3729 at 810.325 kb on + strand, within Atu3729 at 810.325 kb on + strand, within Atu3729 at 810.330 kb on - strand, within Atu3729 at 810.369 kb on - strand, within Atu3729 at 810.464 kb on + strand, within Atu3729 at 810.466 kb on + strand, within Atu3729 at 810.510 kb on + strand at 810.510 kb on + strand at 810.567 kb on - strand at 810.653 kb on - strand at 810.701 kb on + strand at 810.704 kb on - strand at 810.747 kb on - strand at 810.755 kb on + strand at 810.782 kb on - strand at 810.817 kb on - strand at 811.060 kb on - strand, within Atu3730 at 811.088 kb on - strand, within Atu3730 at 811.457 kb on - strand, within Atu3730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Quinic (C) remove 808,949 + Atu3727 0.73 -0.5 809,245 + -0.8 809,280 + -0.4 809,291 + +1.2 809,386 + -0.1 809,411 - Atu3728 0.12 +0.7 809,458 - Atu3728 0.21 -0.2 809,458 - Atu3728 0.21 -0.5 809,460 + Atu3728 0.22 -1.8 809,481 + Atu3728 0.26 +0.3 809,562 + Atu3728 0.42 -0.1 809,570 - Atu3728 0.44 +0.2 809,570 - Atu3728 0.44 +0.1 809,675 + Atu3728 0.64 +0.4 809,675 + Atu3728 0.64 +0.3 809,683 - Atu3728 0.66 +1.3 809,693 - Atu3728 0.68 +0.5 809,694 - Atu3728 0.68 -0.0 809,757 - Atu3728 0.81 +0.5 809,986 + Atu3729 0.15 -0.1 810,038 + Atu3729 0.23 +0.2 810,046 - Atu3729 0.24 -0.1 810,066 + Atu3729 0.27 -0.1 810,071 + Atu3729 0.28 +0.0 810,074 - Atu3729 0.28 +0.1 810,298 + Atu3729 0.62 +0.6 810,315 + Atu3729 0.65 +0.2 810,320 + Atu3729 0.66 +0.1 810,325 + Atu3729 0.67 +0.3 810,325 + Atu3729 0.67 +0.6 810,330 - Atu3729 0.67 +0.1 810,369 - Atu3729 0.73 +1.8 810,464 + Atu3729 0.88 -0.1 810,466 + Atu3729 0.88 +0.3 810,510 + -0.8 810,510 + -0.1 810,567 - -0.3 810,653 - -0.1 810,701 + -0.3 810,704 - +0.5 810,747 - -1.5 810,755 + +0.3 810,782 - +0.4 810,817 - +0.0 811,060 - Atu3730 0.26 -0.7 811,088 - Atu3730 0.29 -1.1 811,457 - Atu3730 0.74 -2.7
Or see this region's nucleotide sequence