Strain Fitness in Agrobacterium fabrum C58 around Atu5204

Experiment: D-Quinic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5203 and Atu5204 are separated by 118 nucleotidesAtu5204 and Atu5205 are separated by 238 nucleotides Atu5203: Atu5203 - beta-lactamase, at 200,613 to 201,692 Atu5203 Atu5204: Atu5204 - aldehyde dehydrogenase, at 201,811 to 203,265 Atu5204 Atu5205: Atu5205 - hypothetical protein, at 203,504 to 204,022 Atu5205 Position (kb) 201 202 203 204Strain fitness (log2 ratio) -2 -1 0 1 2at 200.829 kb on + strand, within Atu5203at 200.871 kb on + strand, within Atu5203at 200.926 kb on - strand, within Atu5203at 200.966 kb on + strand, within Atu5203at 201.053 kb on + strand, within Atu5203at 201.053 kb on + strand, within Atu5203at 201.115 kb on + strand, within Atu5203at 201.123 kb on - strand, within Atu5203at 201.398 kb on + strand, within Atu5203at 201.429 kb on - strand, within Atu5203at 201.442 kb on - strand, within Atu5203at 201.488 kb on - strand, within Atu5203at 201.549 kb on + strand, within Atu5203at 201.549 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.554 kb on + strand, within Atu5203at 201.559 kb on + strand, within Atu5203at 201.562 kb on - strand, within Atu5203at 201.602 kb on + strandat 201.602 kb on + strandat 201.689 kb on - strandat 201.715 kb on + strandat 201.729 kb on + strandat 201.895 kb on + strandat 202.007 kb on + strand, within Atu5204at 202.071 kb on + strand, within Atu5204at 202.143 kb on + strand, within Atu5204at 202.153 kb on + strand, within Atu5204at 202.161 kb on - strand, within Atu5204at 202.172 kb on - strand, within Atu5204at 202.232 kb on - strand, within Atu5204at 202.300 kb on - strand, within Atu5204at 202.358 kb on - strand, within Atu5204at 202.447 kb on - strand, within Atu5204at 202.447 kb on - strand, within Atu5204at 202.599 kb on + strand, within Atu5204at 202.607 kb on - strand, within Atu5204at 202.637 kb on - strand, within Atu5204at 202.643 kb on + strand, within Atu5204at 202.648 kb on + strand, within Atu5204at 202.661 kb on - strand, within Atu5204at 202.675 kb on - strand, within Atu5204at 202.678 kb on + strand, within Atu5204at 202.694 kb on - strand, within Atu5204at 202.780 kb on - strand, within Atu5204at 202.802 kb on - strand, within Atu5204at 202.815 kb on - strand, within Atu5204at 202.836 kb on + strand, within Atu5204at 202.836 kb on + strand, within Atu5204at 202.844 kb on + strand, within Atu5204at 202.844 kb on - strand, within Atu5204at 202.852 kb on - strand, within Atu5204at 202.852 kb on - strand, within Atu5204at 202.921 kb on - strand, within Atu5204at 203.011 kb on + strand, within Atu5204at 203.107 kb on - strand, within Atu5204at 203.132 kb on + strandat 203.140 kb on - strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.150 kb on + strandat 203.158 kb on - strandat 203.158 kb on - strandat 203.158 kb on - strandat 203.179 kb on + strandat 203.240 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.279 kb on + strandat 203.310 kb on - strandat 203.423 kb on + strandat 203.452 kb on + strandat 203.467 kb on + strandat 203.576 kb on - strand, within Atu5205at 203.638 kb on + strand, within Atu5205at 203.643 kb on + strand, within Atu5205at 203.646 kb on - strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.659 kb on + strand, within Atu5205at 203.660 kb on + strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.667 kb on - strand, within Atu5205at 203.683 kb on + strand, within Atu5205at 203.698 kb on - strand, within Atu5205at 203.702 kb on - strand, within Atu5205at 203.712 kb on + strand, within Atu5205at 203.772 kb on + strand, within Atu5205at 203.825 kb on + strand, within Atu5205at 203.831 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.894 kb on - strand, within Atu5205at 203.929 kb on + strand, within Atu5205at 203.986 kb on + strandat 204.063 kb on - strandat 204.097 kb on - strandat 204.191 kb on + strandat 204.199 kb on - strandat 204.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Quinic (C)
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200,829 + Atu5203 0.20 +0.3
200,871 + Atu5203 0.24 -0.8
200,926 - Atu5203 0.29 -0.3
200,966 + Atu5203 0.33 +0.3
201,053 + Atu5203 0.41 +1.1
201,053 + Atu5203 0.41 -1.1
201,115 + Atu5203 0.46 -1.3
201,123 - Atu5203 0.47 -0.1
201,398 + Atu5203 0.73 -0.1
201,429 - Atu5203 0.76 -0.3
201,442 - Atu5203 0.77 +0.4
201,488 - Atu5203 0.81 -1.2
201,549 + Atu5203 0.87 +0.8
201,549 + Atu5203 0.87 -1.0
201,554 + Atu5203 0.87 -0.3
201,554 + Atu5203 0.87 +0.6
201,554 + Atu5203 0.87 +0.6
201,554 + Atu5203 0.87 -1.3
201,559 + Atu5203 0.88 +1.4
201,562 - Atu5203 0.88 -0.0
201,602 + -0.8
201,602 + -0.5
201,689 - +0.3
201,715 + -0.2
201,729 + +0.2
201,895 + +0.7
202,007 + Atu5204 0.13 -0.2
202,071 + Atu5204 0.18 -0.4
202,143 + Atu5204 0.23 +0.9
202,153 + Atu5204 0.24 +2.4
202,161 - Atu5204 0.24 -0.4
202,172 - Atu5204 0.25 +0.3
202,232 - Atu5204 0.29 -0.3
202,300 - Atu5204 0.34 -0.7
202,358 - Atu5204 0.38 +0.4
202,447 - Atu5204 0.44 +0.2
202,447 - Atu5204 0.44 +0.5
202,599 + Atu5204 0.54 +0.8
202,607 - Atu5204 0.55 +0.3
202,637 - Atu5204 0.57 -0.3
202,643 + Atu5204 0.57 -0.0
202,648 + Atu5204 0.58 +0.2
202,661 - Atu5204 0.58 +0.2
202,675 - Atu5204 0.59 +0.2
202,678 + Atu5204 0.60 -1.2
202,694 - Atu5204 0.61 +0.3
202,780 - Atu5204 0.67 +1.2
202,802 - Atu5204 0.68 +1.0
202,815 - Atu5204 0.69 -0.8
202,836 + Atu5204 0.70 -0.3
202,836 + Atu5204 0.70 -1.0
202,844 + Atu5204 0.71 +0.2
202,844 - Atu5204 0.71 -0.3
202,852 - Atu5204 0.72 +2.2
202,852 - Atu5204 0.72 -0.5
202,921 - Atu5204 0.76 +0.2
203,011 + Atu5204 0.82 +0.3
203,107 - Atu5204 0.89 -0.3
203,132 + -1.2
203,140 - +0.1
203,150 + +2.2
203,150 + +1.6
203,150 + -0.6
203,150 + -0.0
203,158 - -1.9
203,158 - -0.7
203,158 - -0.1
203,179 + -0.2
203,240 + -0.6
203,279 + +0.1
203,279 + +0.7
203,279 + +0.8
203,279 + +0.1
203,310 - +0.3
203,423 + -1.5
203,452 + +0.0
203,467 + -0.3
203,576 - Atu5205 0.14 +0.0
203,638 + Atu5205 0.26 -0.1
203,643 + Atu5205 0.27 +0.8
203,646 - Atu5205 0.27 +0.6
203,659 + Atu5205 0.30 +0.7
203,659 + Atu5205 0.30 -0.8
203,660 + Atu5205 0.30 -0.0
203,667 - Atu5205 0.31 +0.4
203,667 - Atu5205 0.31 +0.1
203,683 + Atu5205 0.34 -0.8
203,698 - Atu5205 0.37 +1.8
203,702 - Atu5205 0.38 +0.7
203,712 + Atu5205 0.40 -0.8
203,772 + Atu5205 0.52 +0.1
203,825 + Atu5205 0.62 -0.1
203,831 - Atu5205 0.63 +0.8
203,894 - Atu5205 0.75 +1.2
203,894 - Atu5205 0.75 -0.8
203,929 + Atu5205 0.82 -0.6
203,986 + +0.2
204,063 - -0.5
204,097 - +0.3
204,191 + -1.9
204,199 - -0.6
204,220 + -0.3

Or see this region's nucleotide sequence