Experiment: D-Quinic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3740 and Atu3741 are separated by 349 nucleotides Atu3741 and Atu3742 are separated by 590 nucleotides
Atu3740: Atu3740 - fructose bisphosphate aldolase, at 821,772 to 822,797
Atu3740
Atu3741: Atu3741 - MFS permease, at 823,147 to 824,436
Atu3741
Atu3742: Atu3742 - hypothetical protein, at 825,027 to 825,542
Atu3742
Position (kb) 823
824
825 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 822.267 kb on - strand, within Atu3740 at 822.278 kb on + strand, within Atu3740 at 822.370 kb on + strand, within Atu3740 at 822.596 kb on - strand, within Atu3740 at 822.618 kb on + strand, within Atu3740 at 822.623 kb on + strand, within Atu3740 at 822.657 kb on + strand, within Atu3740 at 822.657 kb on + strand, within Atu3740 at 822.667 kb on - strand, within Atu3740 at 822.672 kb on + strand, within Atu3740 at 822.680 kb on - strand, within Atu3740 at 822.680 kb on - strand, within Atu3740 at 822.680 kb on - strand, within Atu3740 at 822.680 kb on - strand, within Atu3740 at 822.800 kb on - strand at 822.922 kb on + strand at 822.945 kb on + strand at 822.961 kb on + strand at 823.048 kb on - strand at 823.066 kb on + strand at 823.084 kb on - strand at 823.084 kb on - strand at 823.092 kb on - strand at 823.119 kb on - strand at 823.132 kb on + strand at 823.140 kb on - strand at 823.149 kb on - strand at 823.262 kb on - strand at 823.262 kb on - strand at 823.281 kb on + strand, within Atu3741 at 823.333 kb on + strand, within Atu3741 at 823.344 kb on - strand, within Atu3741 at 823.391 kb on + strand, within Atu3741 at 823.401 kb on + strand, within Atu3741 at 823.444 kb on - strand, within Atu3741 at 823.486 kb on - strand, within Atu3741 at 823.556 kb on + strand, within Atu3741 at 823.564 kb on - strand, within Atu3741 at 823.574 kb on - strand, within Atu3741 at 823.677 kb on + strand, within Atu3741 at 823.677 kb on + strand, within Atu3741 at 823.677 kb on + strand, within Atu3741 at 823.692 kb on + strand, within Atu3741 at 823.701 kb on - strand, within Atu3741 at 823.773 kb on - strand, within Atu3741 at 823.816 kb on - strand, within Atu3741 at 823.820 kb on + strand, within Atu3741 at 823.831 kb on + strand, within Atu3741 at 823.834 kb on - strand, within Atu3741 at 823.836 kb on + strand, within Atu3741 at 823.904 kb on - strand, within Atu3741 at 823.957 kb on + strand, within Atu3741 at 824.059 kb on + strand, within Atu3741 at 824.077 kb on + strand, within Atu3741 at 824.185 kb on + strand, within Atu3741 at 824.193 kb on - strand, within Atu3741 at 824.193 kb on - strand, within Atu3741 at 824.203 kb on - strand, within Atu3741 at 824.222 kb on - strand, within Atu3741 at 824.360 kb on + strand at 824.360 kb on + strand at 824.366 kb on + strand at 824.483 kb on - strand at 824.491 kb on + strand at 824.653 kb on - strand at 824.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Quinic (C) remove 822,267 - Atu3740 0.48 -4.4 822,278 + Atu3740 0.49 -3.7 822,370 + Atu3740 0.58 -3.4 822,596 - Atu3740 0.80 -4.9 822,618 + Atu3740 0.82 -5.1 822,623 + Atu3740 0.83 -4.0 822,657 + Atu3740 0.86 -3.9 822,657 + Atu3740 0.86 -2.8 822,667 - Atu3740 0.87 -4.6 822,672 + Atu3740 0.88 -7.5 822,680 - Atu3740 0.88 -2.7 822,680 - Atu3740 0.88 -4.9 822,680 - Atu3740 0.88 -2.7 822,680 - Atu3740 0.88 -5.3 822,800 - -0.1 822,922 + -0.1 822,945 + +0.2 822,961 + +0.0 823,048 - -0.4 823,066 + -0.4 823,084 - -0.2 823,084 - -2.0 823,092 - -0.5 823,119 - +1.2 823,132 + +0.1 823,140 - +1.2 823,149 - -0.3 823,262 - -2.3 823,262 - +0.1 823,281 + Atu3741 0.10 -0.5 823,333 + Atu3741 0.14 -0.1 823,344 - Atu3741 0.15 +0.1 823,391 + Atu3741 0.19 +0.0 823,401 + Atu3741 0.20 +0.2 823,444 - Atu3741 0.23 -0.3 823,486 - Atu3741 0.26 +0.1 823,556 + Atu3741 0.32 -0.2 823,564 - Atu3741 0.32 -0.7 823,574 - Atu3741 0.33 +0.2 823,677 + Atu3741 0.41 -0.3 823,677 + Atu3741 0.41 +0.2 823,677 + Atu3741 0.41 +0.2 823,692 + Atu3741 0.42 +0.3 823,701 - Atu3741 0.43 -0.2 823,773 - Atu3741 0.49 -0.1 823,816 - Atu3741 0.52 +0.0 823,820 + Atu3741 0.52 -0.0 823,831 + Atu3741 0.53 +0.7 823,834 - Atu3741 0.53 -0.0 823,836 + Atu3741 0.53 -0.2 823,904 - Atu3741 0.59 +0.1 823,957 + Atu3741 0.63 +0.4 824,059 + Atu3741 0.71 +0.2 824,077 + Atu3741 0.72 -0.0 824,185 + Atu3741 0.80 -0.1 824,193 - Atu3741 0.81 +1.1 824,193 - Atu3741 0.81 +0.4 824,203 - Atu3741 0.82 -0.0 824,222 - Atu3741 0.83 -0.1 824,360 + +0.1 824,360 + +0.3 824,366 + +0.7 824,483 - +0.8 824,491 + +0.4 824,653 - -0.1 824,835 - +3.0
Or see this region's nucleotide sequence