Strain Fitness in Agrobacterium fabrum C58 around Atu0990

Experiment: D-Quinic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0989 and Atu0990 are separated by 21 nucleotidesAtu0990 and Atu0991 are separated by 181 nucleotides Atu0989: Atu0989 - hypothetical protein, at 984,866 to 985,771 Atu0989 Atu0990: Atu0990 - NAD/NADP dependent oxidoreductase, at 985,793 to 986,581 Atu0990 Atu0991: Atu0991 - cation efflux system component, at 986,763 to 987,683 Atu0991 Position (kb) 985 986 987Strain fitness (log2 ratio) -1 0 1 2at 984.818 kb on + strandat 984.831 kb on - strandat 984.861 kb on - strandat 984.867 kb on - strandat 984.906 kb on - strandat 985.044 kb on + strand, within Atu0989at 985.055 kb on + strand, within Atu0989at 985.138 kb on - strand, within Atu0989at 985.160 kb on - strand, within Atu0989at 985.230 kb on + strand, within Atu0989at 985.256 kb on + strand, within Atu0989at 985.278 kb on - strand, within Atu0989at 985.349 kb on + strand, within Atu0989at 985.362 kb on - strand, within Atu0989at 985.399 kb on + strand, within Atu0989at 985.407 kb on - strand, within Atu0989at 985.407 kb on - strand, within Atu0989at 985.407 kb on - strand, within Atu0989at 985.438 kb on - strand, within Atu0989at 985.471 kb on - strand, within Atu0989at 985.496 kb on - strand, within Atu0989at 985.608 kb on - strand, within Atu0989at 985.688 kb on + strandat 985.688 kb on + strandat 985.741 kb on - strandat 985.922 kb on + strand, within Atu0990at 985.949 kb on + strand, within Atu0990at 986.007 kb on + strand, within Atu0990at 986.015 kb on - strand, within Atu0990at 986.032 kb on + strand, within Atu0990at 986.032 kb on + strand, within Atu0990at 986.040 kb on - strand, within Atu0990at 986.040 kb on - strand, within Atu0990at 986.062 kb on - strand, within Atu0990at 986.067 kb on - strand, within Atu0990at 986.069 kb on - strand, within Atu0990at 986.073 kb on + strand, within Atu0990at 986.081 kb on - strand, within Atu0990at 986.106 kb on + strand, within Atu0990at 986.114 kb on - strand, within Atu0990at 986.151 kb on - strand, within Atu0990at 986.198 kb on - strand, within Atu0990at 986.213 kb on - strand, within Atu0990at 986.314 kb on + strand, within Atu0990at 986.348 kb on + strand, within Atu0990at 986.400 kb on - strand, within Atu0990at 986.406 kb on + strand, within Atu0990at 986.406 kb on + strand, within Atu0990at 986.406 kb on + strand, within Atu0990at 986.406 kb on + strand, within Atu0990at 986.406 kb on + strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.414 kb on - strand, within Atu0990at 986.521 kb on + strandat 986.521 kb on + strandat 986.521 kb on + strandat 986.521 kb on + strandat 986.529 kb on - strandat 986.529 kb on - strandat 986.529 kb on - strandat 986.594 kb on + strandat 986.767 kb on - strandat 986.809 kb on + strandat 986.832 kb on - strandat 986.953 kb on + strand, within Atu0991at 986.957 kb on - strand, within Atu0991at 987.033 kb on + strand, within Atu0991at 987.033 kb on + strand, within Atu0991at 987.035 kb on + strand, within Atu0991at 987.041 kb on - strand, within Atu0991at 987.043 kb on - strand, within Atu0991at 987.043 kb on - strand, within Atu0991at 987.069 kb on + strand, within Atu0991at 987.072 kb on + strand, within Atu0991at 987.161 kb on + strand, within Atu0991at 987.227 kb on - strand, within Atu0991at 987.243 kb on + strand, within Atu0991at 987.243 kb on + strand, within Atu0991at 987.251 kb on - strand, within Atu0991at 987.268 kb on - strand, within Atu0991at 987.288 kb on - strand, within Atu0991at 987.355 kb on - strand, within Atu0991at 987.374 kb on + strand, within Atu0991at 987.426 kb on - strand, within Atu0991at 987.489 kb on + strand, within Atu0991at 987.571 kb on + strand, within Atu0991at 987.572 kb on - strand, within Atu0991

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Quinic (C)
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984,818 + +0.5
984,831 - +0.1
984,861 - +0.4
984,867 - -0.2
984,906 - -0.2
985,044 + Atu0989 0.20 +1.2
985,055 + Atu0989 0.21 -1.4
985,138 - Atu0989 0.30 -0.6
985,160 - Atu0989 0.32 -0.1
985,230 + Atu0989 0.40 +0.7
985,256 + Atu0989 0.43 -0.1
985,278 - Atu0989 0.45 -0.9
985,349 + Atu0989 0.53 -0.4
985,362 - Atu0989 0.55 +0.4
985,399 + Atu0989 0.59 +0.1
985,407 - Atu0989 0.60 +0.4
985,407 - Atu0989 0.60 -0.1
985,407 - Atu0989 0.60 +1.9
985,438 - Atu0989 0.63 -0.5
985,471 - Atu0989 0.67 +0.2
985,496 - Atu0989 0.70 -0.5
985,608 - Atu0989 0.82 -0.0
985,688 + +0.6
985,688 + -0.1
985,741 - +0.0
985,922 + Atu0990 0.16 +0.1
985,949 + Atu0990 0.20 +0.8
986,007 + Atu0990 0.27 +1.2
986,015 - Atu0990 0.28 -0.3
986,032 + Atu0990 0.30 -0.4
986,032 + Atu0990 0.30 +0.7
986,040 - Atu0990 0.31 +0.2
986,040 - Atu0990 0.31 +0.0
986,062 - Atu0990 0.34 -0.4
986,067 - Atu0990 0.35 -0.2
986,069 - Atu0990 0.35 +0.1
986,073 + Atu0990 0.35 +0.6
986,081 - Atu0990 0.37 -0.0
986,106 + Atu0990 0.40 -0.3
986,114 - Atu0990 0.41 -0.9
986,151 - Atu0990 0.45 +0.8
986,198 - Atu0990 0.51 -0.4
986,213 - Atu0990 0.53 -0.5
986,314 + Atu0990 0.66 +0.0
986,348 + Atu0990 0.70 -1.4
986,400 - Atu0990 0.77 +0.4
986,406 + Atu0990 0.78 -0.4
986,406 + Atu0990 0.78 +0.2
986,406 + Atu0990 0.78 +0.3
986,406 + Atu0990 0.78 +0.0
986,406 + Atu0990 0.78 -0.1
986,414 - Atu0990 0.79 +0.0
986,414 - Atu0990 0.79 -0.6
986,414 - Atu0990 0.79 +0.7
986,414 - Atu0990 0.79 +0.0
986,414 - Atu0990 0.79 -0.0
986,414 - Atu0990 0.79 +0.1
986,414 - Atu0990 0.79 +0.7
986,521 + -0.0
986,521 + +0.4
986,521 + +0.2
986,521 + +0.2
986,529 - +0.0
986,529 - -0.5
986,529 - -0.4
986,594 + -0.0
986,767 - +0.5
986,809 + +0.4
986,832 - +0.4
986,953 + Atu0991 0.21 -0.2
986,957 - Atu0991 0.21 -0.4
987,033 + Atu0991 0.29 -0.3
987,033 + Atu0991 0.29 +0.0
987,035 + Atu0991 0.30 +0.2
987,041 - Atu0991 0.30 +0.2
987,043 - Atu0991 0.30 -0.0
987,043 - Atu0991 0.30 +0.1
987,069 + Atu0991 0.33 -0.7
987,072 + Atu0991 0.34 -0.5
987,161 + Atu0991 0.43 +0.6
987,227 - Atu0991 0.50 -0.0
987,243 + Atu0991 0.52 -0.1
987,243 + Atu0991 0.52 +0.2
987,251 - Atu0991 0.53 +0.2
987,268 - Atu0991 0.55 -0.0
987,288 - Atu0991 0.57 +0.1
987,355 - Atu0991 0.64 -1.0
987,374 + Atu0991 0.66 -0.4
987,426 - Atu0991 0.72 +0.5
987,489 + Atu0991 0.79 +0.1
987,571 + Atu0991 0.88 -0.1
987,572 - Atu0991 0.88 -0.3

Or see this region's nucleotide sequence