Experiment: D-Quinic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0624 and Atu8134 are separated by 95 nucleotides Atu8134 and Atu0626 are separated by 149 nucleotides Atu0626 and Atu0627 are separated by 118 nucleotides
Atu0624: Atu0624 - inosine-5`-monophosphate dehydrogenase, at 612,499 to 613,872
Atu0624
Atu8134: Atu8134 - hypothetical protein, at 613,968 to 614,387
Atu8134
Atu0626: Atu0626 - alcohol dehydrogenase, at 614,537 to 615,565
Atu0626
Atu0627: Atu0627 - carboxymethylenebutenolidase, at 615,684 to 616,559
Atu0627
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 614.009 kb on + strand at 614.048 kb on - strand, within Atu8134 at 614.077 kb on + strand, within Atu8134 at 614.077 kb on - strand, within Atu8134 at 614.077 kb on - strand, within Atu8134 at 614.182 kb on - strand, within Atu8134 at 614.232 kb on + strand, within Atu8134 at 614.232 kb on + strand, within Atu8134 at 614.286 kb on + strand, within Atu8134 at 614.305 kb on + strand, within Atu8134 at 614.329 kb on + strand, within Atu8134 at 614.479 kb on + strand at 614.655 kb on - strand, within Atu0626 at 614.671 kb on + strand, within Atu0626 at 614.775 kb on + strand, within Atu0626 at 614.783 kb on - strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.828 kb on - strand, within Atu0626 at 614.867 kb on - strand, within Atu0626 at 614.904 kb on + strand, within Atu0626 at 615.005 kb on + strand, within Atu0626 at 615.015 kb on - strand, within Atu0626 at 615.015 kb on - strand, within Atu0626 at 615.103 kb on + strand, within Atu0626 at 615.261 kb on - strand, within Atu0626 at 615.286 kb on + strand, within Atu0626 at 615.286 kb on + strand, within Atu0626 at 615.294 kb on - strand, within Atu0626 at 615.294 kb on - strand, within Atu0626 at 615.371 kb on + strand, within Atu0626 at 615.377 kb on - strand, within Atu0626 at 615.379 kb on - strand, within Atu0626 at 615.641 kb on + strand at 615.692 kb on + strand at 615.896 kb on - strand, within Atu0627 at 616.103 kb on - strand, within Atu0627 at 616.180 kb on + strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.373 kb on + strand, within Atu0627
Per-strain Table
Position Strand Gene LocusTag Fraction D-Quinic (C) remove 614,009 + -0.2 614,048 - Atu8134 0.19 +0.6 614,077 + Atu8134 0.26 -0.7 614,077 - Atu8134 0.26 -0.7 614,077 - Atu8134 0.26 -0.3 614,182 - Atu8134 0.51 -0.1 614,232 + Atu8134 0.63 +0.1 614,232 + Atu8134 0.63 +0.7 614,286 + Atu8134 0.76 -0.0 614,305 + Atu8134 0.80 +0.0 614,329 + Atu8134 0.86 -0.1 614,479 + +0.0 614,655 - Atu0626 0.11 -0.1 614,671 + Atu0626 0.13 -0.9 614,775 + Atu0626 0.23 -0.8 614,783 - Atu0626 0.24 -0.1 614,809 + Atu0626 0.26 +0.5 614,809 + Atu0626 0.26 +1.0 614,809 + Atu0626 0.26 -0.4 614,809 + Atu0626 0.26 -0.0 614,817 - Atu0626 0.27 -0.2 614,817 - Atu0626 0.27 +0.5 614,828 - Atu0626 0.28 -0.6 614,867 - Atu0626 0.32 -0.6 614,904 + Atu0626 0.36 +0.1 615,005 + Atu0626 0.45 +0.1 615,015 - Atu0626 0.46 -0.1 615,015 - Atu0626 0.46 -0.6 615,103 + Atu0626 0.55 +0.6 615,261 - Atu0626 0.70 +0.3 615,286 + Atu0626 0.73 +0.7 615,286 + Atu0626 0.73 -0.0 615,294 - Atu0626 0.74 +0.1 615,294 - Atu0626 0.74 -1.5 615,371 + Atu0626 0.81 +0.0 615,377 - Atu0626 0.82 +0.2 615,379 - Atu0626 0.82 +0.4 615,641 + +0.2 615,692 + -2.8 615,896 - Atu0627 0.24 +0.0 616,103 - Atu0627 0.48 +0.2 616,180 + Atu0627 0.57 -0.3 616,249 - Atu0627 0.64 -0.3 616,249 - Atu0627 0.64 -2.1 616,373 + Atu0627 0.79 +0.2
Or see this region's nucleotide sequence