Strain Fitness in Agrobacterium fabrum C58 around Atu0686

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0685 and Atu0686 are separated by 272 nucleotidesAtu0686 and Atu0687 are separated by 151 nucleotidesAtu0687 and Atu0688 are separated by 54 nucleotides Atu0685: Atu0685 - riboflavin biosynthesis bifunctional protein, at 679,610 to 680,590 Atu0685 Atu0686: Atu0686 - isoleucyl-tRNA synthetase, at 680,863 to 683,766 Atu0686 Atu0687: Atu0687 - hypothetical protein, at 683,918 to 684,547 Atu0687 Atu0688: Atu0688 - cytidine and deoxycytidylate deaminase, at 684,602 to 685,060 Atu0688 Position (kb) 680 681 682 683 684Strain fitness (log2 ratio) -2 -1 0 1at 680.535 kb on - strandat 680.535 kb on - strandat 680.547 kb on - strandat 683.935 kb on + strandat 684.162 kb on - strand, within Atu0687at 684.180 kb on - strand, within Atu0687at 684.352 kb on + strand, within Atu0687at 684.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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680,535 - +0.3
680,535 - -1.1
680,547 - -0.0
683,935 + -2.4
684,162 - Atu0687 0.39 -0.9
684,180 - Atu0687 0.42 -0.8
684,352 + Atu0687 0.69 -0.8
684,588 - +0.2

Or see this region's nucleotide sequence