Strain Fitness in Escherichia coli BW25113 around b1803

Experiment: nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaW and yeaX are separated by 55 nucleotidesyeaX and rnd are separated by 53 nucleotides b1802: yeaW - predicted 2Fe-2S cluster-containing protein (NCBI), at 1,882,689 to 1,883,813 yeaW b1803: yeaX - predicted oxidoreductase (NCBI), at 1,883,869 to 1,884,834 yeaX b1804: rnd - ribonuclease D (NCBI), at 1,884,888 to 1,886,015 rnd Position (kb) 1883 1884 1885Strain fitness (log2 ratio) -1 0 1 2at 1883.061 kb on + strand, within yeaWat 1883.116 kb on - strand, within yeaWat 1883.116 kb on - strand, within yeaWat 1883.298 kb on - strand, within yeaWat 1883.298 kb on - strand, within yeaWat 1883.458 kb on - strand, within yeaWat 1883.503 kb on + strand, within yeaWat 1883.656 kb on - strand, within yeaWat 1883.723 kb on - strandat 1883.734 kb on - strandat 1884.004 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.124 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.238 kb on - strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.518 kb on + strand, within yeaXat 1884.707 kb on + strand, within yeaXat 1885.050 kb on + strand, within rndat 1885.099 kb on - strand, within rndat 1885.229 kb on + strand, within rndat 1885.229 kb on + strand, within rndat 1885.234 kb on + strand, within rndat 1885.369 kb on - strand, within rndat 1885.369 kb on - strand, within rndat 1885.413 kb on - strand, within rndat 1885.590 kb on - strand, within rndat 1885.602 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.644 kb on + strand, within rndat 1885.714 kb on + strand, within rndat 1885.830 kb on + strand, within rnd

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 10 mM
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1,883,061 + yeaW b1802 0.33 -0.1
1,883,116 - yeaW b1802 0.38 -0.6
1,883,116 - yeaW b1802 0.38 +0.9
1,883,298 - yeaW b1802 0.54 -0.1
1,883,298 - yeaW b1802 0.54 +0.6
1,883,458 - yeaW b1802 0.68 -1.1
1,883,503 + yeaW b1802 0.72 -1.4
1,883,656 - yeaW b1802 0.86 -0.3
1,883,723 - +0.5
1,883,734 - -0.2
1,884,004 - yeaX b1803 0.14 +0.3
1,884,124 - yeaX b1803 0.26 +0.2
1,884,124 - yeaX b1803 0.26 -0.7
1,884,238 - yeaX b1803 0.38 -1.0
1,884,238 - yeaX b1803 0.38 +1.9
1,884,518 + yeaX b1803 0.67 -1.7
1,884,518 + yeaX b1803 0.67 -0.7
1,884,707 + yeaX b1803 0.87 +0.7
1,885,050 + rnd b1804 0.14 -0.7
1,885,099 - rnd b1804 0.19 +0.2
1,885,229 + rnd b1804 0.30 +1.3
1,885,229 + rnd b1804 0.30 -0.1
1,885,234 + rnd b1804 0.31 -0.1
1,885,369 - rnd b1804 0.43 +0.3
1,885,369 - rnd b1804 0.43 +1.2
1,885,413 - rnd b1804 0.47 +0.3
1,885,590 - rnd b1804 0.62 +0.5
1,885,602 + rnd b1804 0.63 +1.3
1,885,644 + rnd b1804 0.67 -0.2
1,885,644 + rnd b1804 0.67 +0.3
1,885,714 + rnd b1804 0.73 -1.0
1,885,830 + rnd b1804 0.84 -0.2

Or see this region's nucleotide sequence