Strain Fitness in Pseudomonas sp. RS175 around PFR28_02402

Experiment: L-Carnitine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C) 10 mM
2,868,261	+		PFR28_02401	0.36	-0.6
2,868,261	+		PFR28_02401	0.36	-3.0
2,868,261	+		PFR28_02401	0.36	-0.3
2,868,261	+		PFR28_02401	0.36	+0.5
2,868,261	+		PFR28_02401	0.36	-0.9
2,868,262	-		PFR28_02401	0.36	+0.6
2,868,262	-		PFR28_02401	0.36	+0.2
2,868,262	-		PFR28_02401	0.36	-0.4
2,868,262	-		PFR28_02401	0.36	-2.6
2,868,262	-		PFR28_02401	0.36	-1.1
2,868,465	+		PFR28_02401	0.58	-0.3
2,868,466	-		PFR28_02401	0.58	+0.1
2,868,466	-		PFR28_02401	0.58	-2.3
2,868,466	-		PFR28_02401	0.58	+0.3
2,868,541	+		PFR28_02401	0.66	-2.8
2,868,541	+		PFR28_02401	0.66	+0.4
2,868,541	+		PFR28_02401	0.66	-0.9
2,868,542	-		PFR28_02401	0.66	+0.8
2,868,542	-		PFR28_02401	0.66	-0.2
2,868,544	+		PFR28_02401	0.66	-0.5
2,868,545	-		PFR28_02401	0.66	+1.1
2,868,598	+		PFR28_02401	0.72	+0.6
2,868,598	+		PFR28_02401	0.72	+0.6
2,868,684	+		PFR28_02401	0.81	-0.1
2,868,684	+		PFR28_02401	0.81	-2.9
2,868,684	+		PFR28_02401	0.81	+0.4
2,868,907	-				-0.6
2,868,907	-				-0.1
2,869,050	+				+0.8
2,869,051	-				+0.9
2,869,051	-				+0.8
2,869,051	-				+0.6
2,869,057	+				-0.6
2,869,057	+				+0.6
2,869,058	-				-0.3
2,869,058	-				-0.5
2,869,104	+				+0.1
2,869,104	+				-3.8
2,869,104	+				+0.3
2,869,104	+				-0.9
2,869,105	-				-0.0
2,869,105	-				+0.9
2,869,105	-				-3.0
2,869,105	-				-0.4
2,869,105	-				+1.0
2,869,105	-				-0.1
2,869,105	-				+1.3
2,869,138	+				+0.2
2,869,138	+				+1.1
2,869,138	+				-1.3
2,869,139	-				+0.6
2,869,149	+				+0.6
2,869,149	+				+0.5
2,869,149	+				+1.4
2,869,150	-				-2.3
2,869,150	-				-1.3
2,869,155	+				-1.4
2,869,156	-				-2.4
2,869,158	+				-1.4
2,869,277	+				-0.5
2,869,316	+				-0.4
2,869,316	+				-0.3
2,869,316	+				-0.2
2,869,316	+				-0.1
2,869,316	+				-0.5
2,869,316	+				+0.6
2,869,317	-				+0.3
2,869,317	-				-1.7
2,869,421	+				-0.0
2,869,421	+				+0.3
2,869,421	+				+0.6
2,869,421	+				+0.9
2,869,422	-				+0.4
2,869,422	-				+0.2
2,869,433	+		PFR28_02402	0.10	+0.5
2,869,433	+		PFR28_02402	0.10	-0.5
2,869,433	+		PFR28_02402	0.10	+1.4
2,869,433	+		PFR28_02402	0.10	-1.6
2,869,433	+		PFR28_02402	0.10	+0.6
2,869,433	+		PFR28_02402	0.10	-2.5
2,869,433	+		PFR28_02402	0.10	-0.4
2,869,433	+		PFR28_02402	0.10	+0.8
2,869,433	+		PFR28_02402	0.10	+0.6
2,869,433	+		PFR28_02402	0.10	+0.7
2,869,433	+		PFR28_02402	0.10	-0.0
2,869,433	+		PFR28_02402	0.10	+1.0
2,869,433	+		PFR28_02402	0.10	-0.9
2,869,433	+		PFR28_02402	0.10	+0.3
2,869,433	+		PFR28_02402	0.10	-0.1
2,869,433	+		PFR28_02402	0.10	+0.5
2,869,433	+		PFR28_02402	0.10	-0.7
2,869,434	-		PFR28_02402	0.10	-1.9
2,869,434	-		PFR28_02402	0.10	+0.3
2,869,434	-		PFR28_02402	0.10	+1.0
2,869,434	-		PFR28_02402	0.10	-0.7
2,869,434	-		PFR28_02402	0.10	+1.0
2,869,434	-		PFR28_02402	0.10	+1.2
2,869,434	-		PFR28_02402	0.10	-2.7
2,869,434	-		PFR28_02402	0.10	-0.0
2,869,434	-		PFR28_02402	0.10	+1.0
2,869,434	-		PFR28_02402	0.10	-1.8
2,869,434	-		PFR28_02402	0.10	+0.3
2,869,434	-		PFR28_02402	0.10	-1.3
2,869,434	-		PFR28_02402	0.10	-1.9
2,869,434	-		PFR28_02402	0.10	+0.7
2,869,434	-		PFR28_02402	0.10	+0.4
2,869,434	-		PFR28_02402	0.10	-0.6
2,869,434	-		PFR28_02402	0.10	+0.4
2,869,434	-		PFR28_02402	0.10	+1.6
2,869,434	-		PFR28_02402	0.10	-2.4
2,869,434	-		PFR28_02402	0.10	-0.0
2,869,434	-		PFR28_02402	0.10	-1.7
2,869,434	-		PFR28_02402	0.10	-0.4
2,869,434	-		PFR28_02402	0.10	-1.0
2,869,434	-		PFR28_02402	0.10	+0.2
2,869,619	+		PFR28_02402	0.16	+0.8
2,869,619	+		PFR28_02402	0.16	-1.3
2,869,619	+		PFR28_02402	0.16	+0.3
2,869,619	+		PFR28_02402	0.16	-0.2
2,869,619	+		PFR28_02402	0.16	-1.0
2,869,620	-		PFR28_02402	0.16	-0.0
2,869,620	-		PFR28_02402	0.16	-0.7
2,869,620	-		PFR28_02402	0.16	+0.8
2,869,700	+		PFR28_02402	0.19	+0.9
2,869,700	+		PFR28_02402	0.19	+0.4
2,869,700	+		PFR28_02402	0.19	+1.2
2,869,700	+		PFR28_02402	0.19	-1.1
2,869,701	-		PFR28_02402	0.19	-0.2
2,869,732	+		PFR28_02402	0.20	-0.2
2,869,732	+		PFR28_02402	0.20	+0.1
2,869,733	-		PFR28_02402	0.20	+0.3
2,869,733	-		PFR28_02402	0.20	-0.8
2,869,733	-		PFR28_02402	0.20	-0.4
2,869,733	-		PFR28_02402	0.20	-0.3
2,869,754	+		PFR28_02402	0.21	-0.7
2,869,754	+		PFR28_02402	0.21	+1.6
2,869,755	-		PFR28_02402	0.21	-0.0
2,869,865	+		PFR28_02402	0.25	+0.7
2,869,952	+		PFR28_02402	0.28	+0.2
2,869,952	+		PFR28_02402	0.28	+0.4
2,869,952	+		PFR28_02402	0.28	-2.6
2,869,952	+		PFR28_02402	0.28	-1.4
2,869,953	-		PFR28_02402	0.28	-0.9
2,869,953	-		PFR28_02402	0.28	-1.8
2,869,953	-		PFR28_02402	0.28	-1.6
2,869,953	-		PFR28_02402	0.28	-0.8
2,869,997	+		PFR28_02402	0.29	-0.2
2,869,997	+		PFR28_02402	0.29	-0.5
2,869,997	+		PFR28_02402	0.29	-0.1
2,869,998	-		PFR28_02402	0.29	-2.1
2,870,039	+		PFR28_02402	0.31	-1.4
2,870,040	-		PFR28_02402	0.31	+0.4
2,870,207	-		PFR28_02402	0.37	-0.9
2,870,411	+		PFR28_02402	0.43	-0.2
2,870,412	-		PFR28_02402	0.44	-0.1
2,870,412	-		PFR28_02402	0.44	+0.4
2,870,412	-		PFR28_02402	0.44	+1.2
2,870,521	-		PFR28_02402	0.47	-3.7
2,870,521	-		PFR28_02402	0.47	+0.4
2,870,618	+		PFR28_02402	0.51	+0.4
2,870,618	+		PFR28_02402	0.51	-0.4
2,870,619	-		PFR28_02402	0.51	+0.5
2,870,619	-		PFR28_02402	0.51	-1.8
2,870,696	+		PFR28_02402	0.53	+0.1
2,870,696	+		PFR28_02402	0.53	+0.6
2,870,696	+		PFR28_02402	0.53	-1.4
2,870,697	-		PFR28_02402	0.53	-0.1
2,871,020	+		PFR28_02402	0.64	+0.3
2,871,021	-		PFR28_02402	0.64	+1.4
2,871,021	-		PFR28_02402	0.64	+0.9
2,871,021	-		PFR28_02402	0.64	-0.1
2,871,077	-		PFR28_02402	0.66	-0.9
2,871,077	-		PFR28_02402	0.66	+0.9
2,871,290	+		PFR28_02402	0.74	+1.9
2,871,291	-		PFR28_02402	0.74	+0.0
2,871,291	-		PFR28_02402	0.74	+1.1
2,871,335	+		PFR28_02402	0.75	-0.1
2,871,335	+		PFR28_02402	0.75	-1.5
2,871,336	-		PFR28_02402	0.75	-2.4
2,871,432	+		PFR28_02402	0.78	+1.1
2,871,456	+		PFR28_02402	0.79	-2.1
2,871,469	-		PFR28_02402	0.80	+0.5
2,871,650	+		PFR28_02402	0.86	+0.0
2,871,650	+		PFR28_02402	0.86	-0.0
2,871,650	+		PFR28_02402	0.86	-0.2
2,871,651	-		PFR28_02402	0.86	-0.0
2,871,651	-		PFR28_02402	0.86	-0.7
2,871,651	-		PFR28_02402	0.86	-1.3
2,871,651	-		PFR28_02402	0.86	+0.5
2,871,731	+		PFR28_02402	0.89	+2.9
2,871,731	+		PFR28_02402	0.89	+0.7
2,871,731	+		PFR28_02402	0.89	+0.3
2,871,731	+		PFR28_02402	0.89	+0.0
2,871,732	-		PFR28_02402	0.89	+0.4
2,871,732	-		PFR28_02402	0.89	-1.8
2,871,732	-		PFR28_02402	0.89	+0.6
2,871,732	-		PFR28_02402	0.89	+1.1
2,871,732	-		PFR28_02402	0.89	-1.9
2,871,732	-		PFR28_02402	0.89	+0.1
2,871,732	-		PFR28_02402	0.89	-0.1
2,871,732	-		PFR28_02402	0.89	+0.6
2,871,732	-		PFR28_02402	0.89	-0.8
2,871,941	+				+0.1
2,871,941	+				+0.1
2,871,941	+				+0.1
2,871,942	-				+0.8
2,871,942	-				-1.0
2,871,942	-				-0.1
2,872,122	-		PFR28_02403	0.17	-0.8
2,872,122	-		PFR28_02403	0.17	-2.4
2,872,265	-		PFR28_02403	0.59	-2.0
2,872,602	+		PFR28_02404	0.12	-0.5
2,872,603	-		PFR28_02404	0.12	+0.5
2,872,603	-		PFR28_02404	0.12	-1.6
2,872,603	-		PFR28_02404	0.12	+0.1
2,872,603	-		PFR28_02404	0.12	+1.9
2,872,696	+		PFR28_02404	0.17	+1.2
2,872,697	-		PFR28_02404	0.17	-0.1
2,872,697	-		PFR28_02404	0.17	+0.0
2,872,697	-		PFR28_02404	0.17	-1.5
2,872,697	-		PFR28_02404	0.17	-0.4
2,872,782	+		PFR28_02404	0.22	+2.7
2,872,852	-		PFR28_02404	0.27	-0.2
2,872,905	+		PFR28_02404	0.30	+0.6
2,872,905	+		PFR28_02404	0.30	+0.8
2,872,905	+		PFR28_02404	0.30	+1.1
2,872,905	+		PFR28_02404	0.30	-2.6
2,872,905	+		PFR28_02404	0.30	+0.1
2,872,906	-		PFR28_02404	0.30	-1.3
2,872,906	-		PFR28_02404	0.30	+0.4
2,872,906	-		PFR28_02404	0.30	-0.1
2,872,906	-		PFR28_02404	0.30	-0.1
2,872,906	-		PFR28_02404	0.30	-0.8
2,872,962	+		PFR28_02404	0.33	+0.6
2,872,962	+		PFR28_02404	0.33	+0.7
2,872,962	+		PFR28_02404	0.33	-0.6
2,872,962	+		PFR28_02404	0.33	-2.9
2,872,963	-		PFR28_02404	0.33	-1.1
2,872,963	-		PFR28_02404	0.33	-1.0
2,872,963	-		PFR28_02404	0.33	-1.0
2,873,008	+		PFR28_02404	0.36	+0.6