Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3528 and Atu3529 overlap by 4 nucleotides Atu3529 and Atu3530 are separated by 3 nucleotides
Atu3528: Atu3528 - oxidoreductase, at 577,129 to 578,118
Atu3528
Atu3529: Atu3529 - mannonate dehydratase, at 578,115 to 579,308
Atu3529
Atu3530: Atu3530 - mannitol dehydrogenase, at 579,312 to 580,784
Atu3530
Position (kb) 578
579
580 Strain fitness (log2 ratio) -2
-1
0
1 at 577.182 kb on - strand at 577.216 kb on + strand at 577.250 kb on - strand, within Atu3528 at 577.328 kb on + strand, within Atu3528 at 577.337 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.394 kb on - strand, within Atu3528 at 577.414 kb on + strand, within Atu3528 at 577.415 kb on - strand, within Atu3528 at 577.497 kb on - strand, within Atu3528 at 577.505 kb on - strand, within Atu3528 at 577.556 kb on - strand, within Atu3528 at 577.601 kb on + strand, within Atu3528 at 577.602 kb on - strand, within Atu3528 at 577.621 kb on - strand, within Atu3528 at 577.685 kb on - strand, within Atu3528 at 577.692 kb on + strand, within Atu3528 at 577.707 kb on + strand, within Atu3528 at 577.748 kb on - strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.753 kb on - strand, within Atu3528 at 577.754 kb on - strand, within Atu3528 at 577.947 kb on + strand, within Atu3528 at 577.950 kb on - strand, within Atu3528 at 578.035 kb on + strand at 578.163 kb on - strand at 578.193 kb on - strand at 578.193 kb on - strand at 578.258 kb on + strand, within Atu3529 at 578.312 kb on - strand, within Atu3529 at 578.501 kb on + strand, within Atu3529 at 578.509 kb on - strand, within Atu3529 at 578.510 kb on - strand, within Atu3529 at 578.684 kb on + strand, within Atu3529 at 578.743 kb on + strand, within Atu3529 at 578.751 kb on - strand, within Atu3529 at 578.944 kb on + strand, within Atu3529 at 579.042 kb on - strand, within Atu3529 at 579.112 kb on - strand, within Atu3529 at 579.130 kb on + strand, within Atu3529 at 579.132 kb on + strand, within Atu3529 at 579.207 kb on + strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.221 kb on - strand at 579.265 kb on - strand at 579.317 kb on - strand at 579.354 kb on + strand at 579.362 kb on - strand at 579.362 kb on - strand at 579.407 kb on - strand at 579.486 kb on + strand, within Atu3530 at 579.491 kb on + strand, within Atu3530 at 579.494 kb on - strand, within Atu3530 at 579.519 kb on + strand, within Atu3530 at 579.556 kb on + strand, within Atu3530 at 579.561 kb on + strand, within Atu3530 at 579.669 kb on + strand, within Atu3530 at 579.736 kb on + strand, within Atu3530 at 579.743 kb on - strand, within Atu3530 at 579.826 kb on - strand, within Atu3530 at 579.858 kb on - strand, within Atu3530 at 579.906 kb on - strand, within Atu3530 at 580.040 kb on - strand, within Atu3530 at 580.052 kb on - strand, within Atu3530 at 580.196 kb on + strand, within Atu3530 at 580.204 kb on - strand, within Atu3530 at 580.231 kb on + strand, within Atu3530 at 580.247 kb on + strand, within Atu3530 at 580.257 kb on - strand, within Atu3530
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 577,182 - +0.1 577,216 + +0.1 577,250 - Atu3528 0.12 -0.1 577,328 + Atu3528 0.20 -0.5 577,337 + Atu3528 0.21 +0.2 577,358 + Atu3528 0.23 -0.5 577,358 + Atu3528 0.23 -0.5 577,394 - Atu3528 0.27 +0.5 577,414 + Atu3528 0.29 -0.7 577,415 - Atu3528 0.29 -0.4 577,497 - Atu3528 0.37 -0.3 577,505 - Atu3528 0.38 -1.3 577,556 - Atu3528 0.43 -0.0 577,601 + Atu3528 0.48 -0.1 577,602 - Atu3528 0.48 +0.0 577,621 - Atu3528 0.50 -1.0 577,685 - Atu3528 0.56 -0.6 577,692 + Atu3528 0.57 -2.3 577,707 + Atu3528 0.58 -1.6 577,748 - Atu3528 0.63 +0.8 577,752 + Atu3528 0.63 +0.7 577,752 + Atu3528 0.63 -0.3 577,753 - Atu3528 0.63 +0.8 577,754 - Atu3528 0.63 -0.0 577,947 + Atu3528 0.83 -0.3 577,950 - Atu3528 0.83 +1.0 578,035 + -2.2 578,163 - +0.2 578,193 - -0.8 578,193 - -0.7 578,258 + Atu3529 0.12 -0.3 578,312 - Atu3529 0.16 +0.2 578,501 + Atu3529 0.32 +1.2 578,509 - Atu3529 0.33 -0.3 578,510 - Atu3529 0.33 +0.2 578,684 + Atu3529 0.48 +0.5 578,743 + Atu3529 0.53 -0.6 578,751 - Atu3529 0.53 -1.2 578,944 + Atu3529 0.69 -0.1 579,042 - Atu3529 0.78 -0.1 579,112 - Atu3529 0.84 -0.2 579,130 + Atu3529 0.85 -0.2 579,132 + Atu3529 0.85 +0.2 579,207 + +1.0 579,221 - +0.4 579,221 - -0.3 579,221 - +0.2 579,265 - +0.0 579,317 - +0.6 579,354 + +0.4 579,362 - -0.2 579,362 - +0.4 579,407 - +1.4 579,486 + Atu3530 0.12 +0.3 579,491 + Atu3530 0.12 -2.2 579,494 - Atu3530 0.12 +0.1 579,519 + Atu3530 0.14 +0.5 579,556 + Atu3530 0.17 +0.8 579,561 + Atu3530 0.17 +1.0 579,669 + Atu3530 0.24 +0.1 579,736 + Atu3530 0.29 +0.6 579,743 - Atu3530 0.29 -0.2 579,826 - Atu3530 0.35 +0.4 579,858 - Atu3530 0.37 +0.2 579,906 - Atu3530 0.40 -0.2 580,040 - Atu3530 0.49 -0.0 580,052 - Atu3530 0.50 +0.1 580,196 + Atu3530 0.60 +0.1 580,204 - Atu3530 0.61 +0.3 580,231 + Atu3530 0.62 +0.4 580,247 + Atu3530 0.63 -0.2 580,257 - Atu3530 0.64 -1.6
Or see this region's nucleotide sequence