Strain Fitness in Agrobacterium fabrum C58 around Atu1720

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1719 and Atu1720 are separated by 218 nucleotidesAtu1720 and Atu1721 are separated by 390 nucleotides Atu1719: Atu1719 - valyl-tRNA synthetase, at 1,705,487 to 1,708,330 Atu1719 Atu1720: Atu1720 - hypothetical protein, at 1,708,549 to 1,709,550 Atu1720 Atu1721: Atu1721 - protein-L-isoaspartate O-methyltransferase, at 1,709,941 to 1,710,612 Atu1721 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -1 0 1at 1709.701 kb on - strandat 1709.729 kb on - strandat 1709.733 kb on - strandat 1709.774 kb on + strandat 1709.782 kb on - strandat 1709.782 kb on - strandat 1709.782 kb on - strandat 1709.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,709,701 - +0.4
1,709,729 - +0.1
1,709,733 - -1.1
1,709,774 + -0.3
1,709,782 - +1.6
1,709,782 - -0.1
1,709,782 - -0.2
1,709,984 - +0.1

Or see this region's nucleotide sequence