Strain Fitness in Pseudomonas sp. RS175 around PFR28_00511

Experiment: L-Carnitine (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00510 and PFR28_00511 are separated by 153 nucleotidesPFR28_00511 and PFR28_00512 are separated by 153 nucleotidesPFR28_00512 and PFR28_00513 are separated by 4 nucleotidesPFR28_00513 and PFR28_00514 are separated by 135 nucleotides PFR28_00510: PFR28_00510 - Acyl-homoserine lactone acylase QuiP, at 545,763 to 548,213 _00510 PFR28_00511: PFR28_00511 - Isochorismatase family protein YecD, at 548,367 to 548,969 _00511 PFR28_00512: PFR28_00512 - hypothetical protein, at 549,123 to 549,326 _00512 PFR28_00513: PFR28_00513 - hypothetical protein, at 549,331 to 549,816 _00513 PFR28_00514: PFR28_00514 - hypothetical protein, at 549,952 to 550,452 _00514 Position (kb) 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 547.567 kb on + strand, within PFR28_00510at 547.705 kb on + strand, within PFR28_00510at 547.718 kb on - strand, within PFR28_00510at 547.768 kb on + strand, within PFR28_00510at 547.769 kb on - strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.789 kb on + strand, within PFR28_00510at 547.790 kb on - strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.831 kb on + strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.832 kb on - strand, within PFR28_00510at 547.873 kb on + strand, within PFR28_00510at 547.874 kb on - strand, within PFR28_00510at 547.978 kb on + strandat 548.085 kb on + strandat 548.086 kb on - strandat 548.086 kb on - strandat 548.086 kb on - strandat 548.117 kb on + strandat 548.196 kb on - strandat 548.254 kb on + strandat 548.259 kb on + strandat 548.260 kb on - strandat 548.298 kb on + strandat 548.298 kb on + strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.299 kb on - strandat 548.356 kb on - strandat 548.356 kb on - strandat 548.419 kb on + strandat 548.419 kb on + strandat 548.419 kb on + strandat 548.420 kb on - strandat 548.420 kb on - strandat 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.840 kb on + strand, within PFR28_00511at 548.841 kb on - strand, within PFR28_00511at 548.841 kb on - strand, within PFR28_00511at 548.859 kb on + strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.860 kb on - strand, within PFR28_00511at 548.925 kb on + strandat 548.926 kb on - strandat 549.031 kb on - strandat 549.040 kb on + strandat 549.040 kb on + strandat 549.040 kb on + strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.041 kb on - strandat 549.047 kb on + strandat 549.047 kb on + strandat 549.048 kb on - strandat 549.344 kb on - strandat 549.358 kb on + strandat 549.359 kb on - strandat 549.386 kb on + strand, within PFR28_00513at 549.386 kb on + strand, within PFR28_00513at 549.387 kb on - strand, within PFR28_00513at 549.387 kb on - strand, within PFR28_00513at 549.400 kb on + strand, within PFR28_00513at 549.400 kb on + strand, within PFR28_00513at 549.400 kb on + strand, within PFR28_00513at 549.400 kb on + strand, within PFR28_00513at 549.401 kb on - strand, within PFR28_00513at 549.499 kb on - strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.688 kb on + strand, within PFR28_00513at 549.901 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Carnitine (C) 10 mM
remove
547,567 + PFR28_00510 0.74 +0.6
547,705 + PFR28_00510 0.79 +0.0
547,718 - PFR28_00510 0.80 +0.1
547,768 + PFR28_00510 0.82 +0.4
547,769 - PFR28_00510 0.82 -0.0
547,789 + PFR28_00510 0.83 -2.1
547,789 + PFR28_00510 0.83 -0.4
547,789 + PFR28_00510 0.83 +0.9
547,790 - PFR28_00510 0.83 +0.3
547,831 + PFR28_00510 0.84 +0.3
547,831 + PFR28_00510 0.84 -0.1
547,831 + PFR28_00510 0.84 +0.5
547,831 + PFR28_00510 0.84 -1.3
547,832 - PFR28_00510 0.84 -1.1
547,832 - PFR28_00510 0.84 -1.0
547,832 - PFR28_00510 0.84 -1.6
547,832 - PFR28_00510 0.84 -1.4
547,832 - PFR28_00510 0.84 -3.0
547,832 - PFR28_00510 0.84 +0.3
547,873 + PFR28_00510 0.86 -1.0
547,874 - PFR28_00510 0.86 +0.8
547,978 + -0.5
548,085 + -0.4
548,086 - -2.7
548,086 - -1.4
548,086 - +0.1
548,117 + -1.9
548,196 - +0.5
548,254 + -0.1
548,259 + -1.1
548,260 - +0.5
548,298 + -0.5
548,298 + -1.6
548,299 - -0.9
548,299 - +0.2
548,299 - +0.5
548,299 - -2.7
548,356 - -1.2
548,356 - -0.1
548,419 + +0.0
548,419 + -0.3
548,419 + -1.1
548,420 - -3.3
548,420 - -0.4
548,840 + PFR28_00511 0.78 +0.3
548,840 + PFR28_00511 0.78 +0.2
548,840 + PFR28_00511 0.78 -0.8
548,840 + PFR28_00511 0.78 -1.4
548,840 + PFR28_00511 0.78 +0.1
548,841 - PFR28_00511 0.79 -0.4
548,841 - PFR28_00511 0.79 -0.3
548,859 + PFR28_00511 0.82 +1.6
548,860 - PFR28_00511 0.82 -1.2
548,860 - PFR28_00511 0.82 -1.6
548,860 - PFR28_00511 0.82 -0.8
548,860 - PFR28_00511 0.82 -0.5
548,925 + -1.0
548,926 - -0.1
549,031 - -0.4
549,040 + -0.5
549,040 + +1.3
549,040 + -1.6
549,041 - -0.7
549,041 - -1.5
549,041 - +0.5
549,041 - -0.8
549,041 - +1.3
549,047 + -0.6
549,047 + -0.4
549,048 - +0.6
549,344 - -0.0
549,358 + -0.0
549,359 - +1.3
549,386 + PFR28_00513 0.11 -0.8
549,386 + PFR28_00513 0.11 -1.6
549,387 - PFR28_00513 0.12 +1.7
549,387 - PFR28_00513 0.12 -0.4
549,400 + PFR28_00513 0.14 -0.6
549,400 + PFR28_00513 0.14 -0.3
549,400 + PFR28_00513 0.14 +0.8
549,400 + PFR28_00513 0.14 +0.9
549,401 - PFR28_00513 0.14 +0.4
549,499 - PFR28_00513 0.35 -0.5
549,518 + PFR28_00513 0.38 +0.3
549,518 + PFR28_00513 0.38 +0.2
549,518 + PFR28_00513 0.38 +0.2
549,519 - PFR28_00513 0.39 +2.6
549,519 - PFR28_00513 0.39 +0.3
549,519 - PFR28_00513 0.39 +0.3
549,688 + PFR28_00513 0.73 -0.4
549,901 + +0.2

Or see this region's nucleotide sequence