Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3345

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,947,780	+		Echvi_3343	0.86	+0.5
3,947,781	-		Echvi_3343	0.87	-0.3
3,947,805	-		Echvi_3343	0.88	+0.2
3,947,805	-		Echvi_3343	0.88	+0.2
3,947,837	-		Echvi_3343	0.90	-0.1
3,947,860	-				-0.2
3,947,877	+				+0.2
3,947,877	+				-2.3
3,947,877	+				-0.4
3,947,949	+				+1.3
3,947,949	+				-1.0
3,947,950	-				+0.4
3,947,953	+				-0.0
3,947,988	+				-0.2
3,948,006	+				-0.1
3,948,006	+				-0.5
3,948,042	+				-2.9
3,948,154	+		Echvi_3344	0.25	-1.2
3,948,155	-		Echvi_3344	0.25	-0.3
3,948,162	+		Echvi_3344	0.27	+1.4
3,948,162	+		Echvi_3344	0.27	-0.1
3,948,163	-		Echvi_3344	0.27	+0.4
3,948,169	+		Echvi_3344	0.28	+0.7
3,948,169	+		Echvi_3344	0.28	+1.3
3,948,172	+		Echvi_3344	0.28	-1.7
3,948,172	+		Echvi_3344	0.28	+0.5
3,948,173	-		Echvi_3344	0.29	+0.5
3,948,348	+		Echvi_3344	0.60	+0.8
3,948,349	-		Echvi_3344	0.60	+1.4
3,948,349	-		Echvi_3344	0.60	-0.0
3,948,349	-		Echvi_3344	0.60	+0.7
3,948,429	-		Echvi_3344	0.74	-0.5
3,948,429	-		Echvi_3344	0.74	-0.6
3,948,434	-		Echvi_3344	0.75	+0.1
3,948,480	+		Echvi_3344	0.83	-0.6
3,948,481	-		Echvi_3344	0.83	-0.0
3,948,481	-		Echvi_3344	0.83	-0.3
3,948,515	-		Echvi_3344	0.89	-0.5
3,948,563	-				+0.1
3,948,563	-				+0.6
3,948,584	-				+1.0
3,948,593	-				-0.2
3,948,616	-				+0.4
3,948,631	+				-2.4
3,948,660	-				-0.3
3,948,688	+				+0.3
3,948,724	+				+0.4
3,948,744	+				+0.5
3,948,744	+				+0.3
3,948,744	+				-0.7
3,948,755	+				-2.3
3,948,784	-				+0.7
3,948,859	+		Echvi_3345	0.14	-0.1
3,948,859	+		Echvi_3345	0.14	+0.4
3,948,915	-		Echvi_3345	0.19	+1.2
3,948,970	+		Echvi_3345	0.25	-0.1
3,948,970	+		Echvi_3345	0.25	-1.1
3,948,975	+		Echvi_3345	0.25	+0.3
3,948,975	+		Echvi_3345	0.25	-0.5
3,949,000	+		Echvi_3345	0.28	-0.0
3,949,000	+		Echvi_3345	0.28	-0.5
3,949,000	+		Echvi_3345	0.28	-1.3
3,949,000	+		Echvi_3345	0.28	-0.8
3,949,001	-		Echvi_3345	0.28	-0.7
3,949,001	-		Echvi_3345	0.28	-0.3
3,949,001	-		Echvi_3345	0.28	-0.2
3,949,043	+		Echvi_3345	0.32	-0.0
3,949,106	-		Echvi_3345	0.38	+0.8
3,949,141	+		Echvi_3345	0.42	+0.5
3,949,141	+		Echvi_3345	0.42	+0.3
3,949,186	+		Echvi_3345	0.46	-0.1
3,949,186	+		Echvi_3345	0.46	+0.1
3,949,186	+		Echvi_3345	0.46	-1.5
3,949,186	+		Echvi_3345	0.46	+1.1
3,949,186	+		Echvi_3345	0.46	-0.0
3,949,187	-		Echvi_3345	0.46	-0.4
3,949,258	+		Echvi_3345	0.53	-0.0
3,949,335	-		Echvi_3345	0.61	-0.2
3,949,376	+		Echvi_3345	0.65	+1.1
3,949,376	+		Echvi_3345	0.65	+0.5
3,949,376	+		Echvi_3345	0.65	-0.4
3,949,376	+		Echvi_3345	0.65	-0.6
3,949,377	-		Echvi_3345	0.65	-1.3
3,949,465	-		Echvi_3345	0.74	-0.4
3,949,480	+		Echvi_3345	0.75	+0.4
3,949,530	-		Echvi_3345	0.80	-1.7
3,949,530	-		Echvi_3345	0.80	+0.0
3,949,531	+		Echvi_3345	0.80	-0.4
3,949,531	+		Echvi_3345	0.80	-1.1
3,949,531	+		Echvi_3345	0.80	+1.4
3,949,531	+		Echvi_3345	0.80	+1.2
3,949,531	+		Echvi_3345	0.80	-1.5
3,949,531	+		Echvi_3345	0.80	-1.0
3,949,531	+		Echvi_3345	0.80	-0.5
3,949,531	+		Echvi_3345	0.80	+2.6
3,949,531	+		Echvi_3345	0.80	-0.6
3,949,531	+		Echvi_3345	0.80	-0.7
3,949,532	-		Echvi_3345	0.80	-0.9
3,949,532	-		Echvi_3345	0.80	-1.9
3,949,532	-		Echvi_3345	0.80	-0.7
3,949,545	+		Echvi_3345	0.82	-0.7
3,949,545	+		Echvi_3345	0.82	-0.6
3,949,546	-		Echvi_3345	0.82	-0.2
3,949,546	-		Echvi_3345	0.82	-0.0
3,949,546	-		Echvi_3345	0.82	+0.4
3,949,546	-		Echvi_3345	0.82	-0.7
3,949,554	-		Echvi_3345	0.83	-0.4
3,949,555	+		Echvi_3345	0.83	+1.0
3,949,555	+		Echvi_3345	0.83	-0.0
3,949,556	-		Echvi_3345	0.83	-0.4
3,949,598	+		Echvi_3345	0.87	+0.3
3,949,598	+		Echvi_3345	0.87	-0.4
3,949,598	+		Echvi_3345	0.87	-0.0
3,949,599	-		Echvi_3345	0.87	-0.7
3,949,599	-		Echvi_3345	0.87	-0.1
3,949,609	+		Echvi_3345	0.88	+0.6
3,949,615	+		Echvi_3345	0.89	-0.0
3,949,621	+		Echvi_3345	0.89	-0.5
3,949,622	-		Echvi_3345	0.89	-0.6
3,949,629	+				+0.5
3,949,713	+				+0.1
3,949,714	-				-0.2
3,949,727	+				+1.0
3,949,734	-				+0.1
3,949,739	+				+0.0
3,949,747	+				-0.3
3,949,796	+				+0.6
3,949,815	+				-0.2
3,949,887	+				-0.3
3,949,887	+				-0.3
3,949,968	+				+0.4
3,949,968	+				-0.6
3,949,982	+				+0.8
3,950,010	-				+0.9
3,950,015	+				-0.2
3,950,054	-		Echvi_3346	0.14	+0.1
3,950,083	+		Echvi_3346	0.17	-1.0
3,950,084	-		Echvi_3346	0.17	+0.1
3,950,090	-		Echvi_3346	0.18	-0.9
3,950,102	+		Echvi_3346	0.19	-0.1
3,950,102	+		Echvi_3346	0.19	+1.6
3,950,103	-		Echvi_3346	0.20	+0.0
3,950,103	-		Echvi_3346	0.20	-1.0
3,950,103	-		Echvi_3346	0.20	-0.2
3,950,115	+		Echvi_3346	0.21	-0.1
3,950,137	+		Echvi_3346	0.24	+0.5
3,950,198	-		Echvi_3346	0.31	-1.5
3,950,201	-		Echvi_3346	0.32	+0.2
3,950,201	-		Echvi_3346	0.32	-0.6
3,950,201	-		Echvi_3346	0.32	-0.6
3,950,222	+		Echvi_3346	0.34	+1.0
3,950,223	-		Echvi_3346	0.34	+1.0
3,950,251	-		Echvi_3346	0.38	+0.3
3,950,251	-		Echvi_3346	0.38	+0.3
3,950,255	+		Echvi_3346	0.38	-0.3
3,950,271	+		Echvi_3346	0.40	+1.6
3,950,271	+		Echvi_3346	0.40	-1.1
3,950,272	-		Echvi_3346	0.40	+0.7
3,950,300	+		Echvi_3346	0.44	+0.1
3,950,313	+		Echvi_3346	0.45	+0.1
3,950,367	+		Echvi_3346	0.52	-0.0
3,950,396	-		Echvi_3346	0.55	+0.2
3,950,417	+		Echvi_3346	0.58	+0.6
3,950,418	-		Echvi_3346	0.58	-0.7
3,950,443	-		Echvi_3346	0.61	-1.6
3,950,519	+		Echvi_3346	0.70	+0.6
3,950,519	+		Echvi_3346	0.70	+0.8
3,950,522	+		Echvi_3346	0.71	-0.0
3,950,531	+		Echvi_3346	0.72	-0.9
3,950,538	+		Echvi_3346	0.73	-1.0
3,950,538	+		Echvi_3346	0.73	+0.2
3,950,539	-		Echvi_3346	0.73	-1.2
3,950,556	-		Echvi_3346	0.75	+0.1
3,950,566	+		Echvi_3346	0.76	-0.9
3,950,566	+		Echvi_3346	0.76	+2.0
3,950,567	-		Echvi_3346	0.76	-0.2
3,950,592	+		Echvi_3346	0.79	+1.2
3,950,603	+		Echvi_3346	0.80	-0.3
3,950,603	+		Echvi_3346	0.80	-0.9
3,950,604	-		Echvi_3346	0.81	-0.1
3,950,641	-		Echvi_3346	0.85	+0.2
3,950,641	-		Echvi_3346	0.85	+1.9
3,950,646	+		Echvi_3346	0.86	-0.0
3,950,647	-		Echvi_3346	0.86	-0.5
3,950,658	-		Echvi_3346	0.87	-0.1
3,950,688	+				-0.1
3,950,689	-				-0.7
3,950,690	+				+0.2
3,950,690	+				+0.5
3,950,691	-				-0.9
3,950,691	-				-0.3
3,950,691	-				-0.5
3,950,691	-				-0.4
3,950,708	-				+0.1
3,950,708	-				+0.2