Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4256

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4255 and Echvi_4256 are separated by 21 nucleotidesEchvi_4256 and Echvi_4257 are separated by 102 nucleotides Echvi_4255: Echvi_4255 - SusD family., at 5,103,222 to 5,104,895 _4255 Echvi_4256: Echvi_4256 - TonB-linked outer membrane protein, SusC/RagA family, at 5,104,917 to 5,107,745 _4256 Echvi_4257: Echvi_4257 - SusD family., at 5,107,848 to 5,109,551 _4257 Position (kb) 5104 5105 5106 5107 5108Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5103.971 kb on + strand, within Echvi_4255at 5103.979 kb on - strand, within Echvi_4255at 5103.985 kb on + strand, within Echvi_4255at 5103.985 kb on + strand, within Echvi_4255at 5103.986 kb on - strand, within Echvi_4255at 5103.986 kb on - strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.076 kb on + strand, within Echvi_4255at 5104.090 kb on + strand, within Echvi_4255at 5104.090 kb on + strand, within Echvi_4255at 5104.114 kb on + strand, within Echvi_4255at 5104.115 kb on - strand, within Echvi_4255at 5104.115 kb on - strand, within Echvi_4255at 5104.188 kb on + strand, within Echvi_4255at 5104.189 kb on - strand, within Echvi_4255at 5104.255 kb on + strand, within Echvi_4255at 5104.256 kb on - strand, within Echvi_4255at 5104.256 kb on - strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.346 kb on - strand, within Echvi_4255at 5104.399 kb on + strand, within Echvi_4255at 5104.474 kb on - strand, within Echvi_4255at 5104.530 kb on - strand, within Echvi_4255at 5104.530 kb on - strand, within Echvi_4255at 5104.585 kb on + strand, within Echvi_4255at 5104.585 kb on + strand, within Echvi_4255at 5104.651 kb on - strand, within Echvi_4255at 5104.745 kb on - strandat 5104.752 kb on + strandat 5104.770 kb on - strandat 5104.775 kb on + strandat 5104.776 kb on - strandat 5104.777 kb on + strandat 5104.875 kb on + strandat 5104.887 kb on + strandat 5104.888 kb on - strandat 5104.943 kb on + strandat 5104.986 kb on + strandat 5105.019 kb on + strandat 5105.084 kb on + strandat 5105.085 kb on - strandat 5105.085 kb on - strandat 5105.086 kb on + strandat 5105.188 kb on + strandat 5105.272 kb on + strand, within Echvi_4256at 5105.342 kb on - strand, within Echvi_4256at 5105.366 kb on - strand, within Echvi_4256at 5105.366 kb on - strand, within Echvi_4256at 5105.370 kb on + strand, within Echvi_4256at 5105.446 kb on + strand, within Echvi_4256at 5105.447 kb on - strand, within Echvi_4256at 5105.451 kb on + strand, within Echvi_4256at 5105.452 kb on - strand, within Echvi_4256at 5105.596 kb on + strand, within Echvi_4256at 5105.596 kb on + strand, within Echvi_4256at 5105.597 kb on - strand, within Echvi_4256at 5105.630 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.653 kb on - strand, within Echvi_4256at 5105.668 kb on + strand, within Echvi_4256at 5105.669 kb on - strand, within Echvi_4256at 5105.698 kb on + strand, within Echvi_4256at 5105.723 kb on + strand, within Echvi_4256at 5105.726 kb on + strand, within Echvi_4256at 5105.749 kb on + strand, within Echvi_4256at 5105.749 kb on + strand, within Echvi_4256at 5105.783 kb on + strand, within Echvi_4256at 5105.805 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.886 kb on - strand, within Echvi_4256at 5105.972 kb on - strand, within Echvi_4256at 5106.000 kb on - strand, within Echvi_4256at 5106.001 kb on + strand, within Echvi_4256at 5106.002 kb on - strand, within Echvi_4256at 5106.205 kb on + strand, within Echvi_4256at 5106.205 kb on + strand, within Echvi_4256at 5106.206 kb on - strand, within Echvi_4256at 5106.209 kb on + strand, within Echvi_4256at 5106.210 kb on - strand, within Echvi_4256at 5106.223 kb on + strand, within Echvi_4256at 5106.223 kb on + strand, within Echvi_4256at 5106.224 kb on - strand, within Echvi_4256at 5106.286 kb on - strand, within Echvi_4256at 5106.360 kb on + strand, within Echvi_4256at 5106.360 kb on + strand, within Echvi_4256at 5106.361 kb on - strand, within Echvi_4256at 5106.361 kb on - strand, within Echvi_4256at 5106.431 kb on + strand, within Echvi_4256at 5106.433 kb on + strand, within Echvi_4256at 5106.433 kb on + strand, within Echvi_4256at 5106.434 kb on - strand, within Echvi_4256at 5106.473 kb on - strand, within Echvi_4256at 5106.547 kb on - strand, within Echvi_4256at 5106.620 kb on + strand, within Echvi_4256at 5106.620 kb on + strand, within Echvi_4256at 5106.620 kb on + strand, within Echvi_4256at 5106.620 kb on + strand, within Echvi_4256at 5106.620 kb on + strand, within Echvi_4256at 5106.623 kb on - strand, within Echvi_4256at 5106.757 kb on + strand, within Echvi_4256at 5106.757 kb on + strand, within Echvi_4256at 5106.757 kb on + strand, within Echvi_4256at 5106.758 kb on - strand, within Echvi_4256at 5106.780 kb on + strand, within Echvi_4256at 5106.899 kb on + strand, within Echvi_4256at 5106.947 kb on - strand, within Echvi_4256at 5106.983 kb on + strand, within Echvi_4256at 5106.983 kb on + strand, within Echvi_4256at 5107.133 kb on - strand, within Echvi_4256at 5107.133 kb on - strand, within Echvi_4256at 5107.150 kb on + strand, within Echvi_4256at 5107.258 kb on - strand, within Echvi_4256at 5107.291 kb on - strand, within Echvi_4256at 5107.291 kb on - strand, within Echvi_4256at 5107.317 kb on + strand, within Echvi_4256at 5107.317 kb on + strand, within Echvi_4256at 5107.318 kb on - strand, within Echvi_4256at 5107.318 kb on - strand, within Echvi_4256at 5107.371 kb on + strand, within Echvi_4256at 5107.423 kb on - strand, within Echvi_4256at 5107.497 kb on - strandat 5107.542 kb on + strandat 5107.584 kb on - strandat 5107.589 kb on - strandat 5107.769 kb on - strandat 5107.869 kb on + strandat 5107.873 kb on + strandat 5107.874 kb on - strandat 5107.906 kb on + strandat 5107.906 kb on + strandat 5107.912 kb on + strandat 5107.913 kb on - strandat 5107.913 kb on - strandat 5107.986 kb on + strandat 5108.120 kb on + strand, within Echvi_4257at 5108.134 kb on + strand, within Echvi_4257at 5108.134 kb on + strand, within Echvi_4257at 5108.154 kb on + strand, within Echvi_4257at 5108.154 kb on + strand, within Echvi_4257at 5108.154 kb on + strand, within Echvi_4257at 5108.154 kb on + strand, within Echvi_4257at 5108.155 kb on - strand, within Echvi_4257at 5108.378 kb on + strand, within Echvi_4257at 5108.437 kb on - strand, within Echvi_4257at 5108.443 kb on + strand, within Echvi_4257at 5108.480 kb on + strand, within Echvi_4257at 5108.480 kb on + strand, within Echvi_4257at 5108.492 kb on - strand, within Echvi_4257at 5108.511 kb on + strand, within Echvi_4257at 5108.511 kb on + strand, within Echvi_4257at 5108.539 kb on + strand, within Echvi_4257at 5108.587 kb on + strand, within Echvi_4257at 5108.685 kb on + strand, within Echvi_4257at 5108.686 kb on - strand, within Echvi_4257

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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5,103,971 + Echvi_4255 0.45 -0.8
5,103,979 - Echvi_4255 0.45 -1.1
5,103,985 + Echvi_4255 0.46 +0.0
5,103,985 + Echvi_4255 0.46 -0.3
5,103,986 - Echvi_4255 0.46 +0.9
5,103,986 - Echvi_4255 0.46 -1.0
5,104,072 + Echvi_4255 0.51 +0.9
5,104,072 + Echvi_4255 0.51 +0.7
5,104,072 + Echvi_4255 0.51 -0.4
5,104,072 + Echvi_4255 0.51 +1.9
5,104,072 + Echvi_4255 0.51 -0.3
5,104,073 - Echvi_4255 0.51 -1.7
5,104,073 - Echvi_4255 0.51 -1.5
5,104,073 - Echvi_4255 0.51 -1.0
5,104,073 - Echvi_4255 0.51 +1.9
5,104,073 - Echvi_4255 0.51 +3.3
5,104,076 + Echvi_4255 0.51 -0.1
5,104,090 + Echvi_4255 0.52 +0.6
5,104,090 + Echvi_4255 0.52 -2.3
5,104,114 + Echvi_4255 0.53 +0.9
5,104,115 - Echvi_4255 0.53 -0.1
5,104,115 - Echvi_4255 0.53 +2.3
5,104,188 + Echvi_4255 0.58 +0.1
5,104,189 - Echvi_4255 0.58 -1.3
5,104,255 + Echvi_4255 0.62 +0.3
5,104,256 - Echvi_4255 0.62 +0.5
5,104,256 - Echvi_4255 0.62 +0.1
5,104,310 + Echvi_4255 0.65 -1.8
5,104,310 + Echvi_4255 0.65 -1.5
5,104,310 + Echvi_4255 0.65 -1.9
5,104,310 + Echvi_4255 0.65 -0.4
5,104,310 + Echvi_4255 0.65 +0.7
5,104,310 + Echvi_4255 0.65 +0.1
5,104,310 + Echvi_4255 0.65 +1.9
5,104,310 + Echvi_4255 0.65 -1.1
5,104,311 - Echvi_4255 0.65 +0.8
5,104,311 - Echvi_4255 0.65 -1.1
5,104,311 - Echvi_4255 0.65 +0.9
5,104,311 - Echvi_4255 0.65 -1.6
5,104,346 - Echvi_4255 0.67 +0.6
5,104,399 + Echvi_4255 0.70 +1.0
5,104,474 - Echvi_4255 0.75 -1.0
5,104,530 - Echvi_4255 0.78 -0.7
5,104,530 - Echvi_4255 0.78 -0.9
5,104,585 + Echvi_4255 0.81 +0.0
5,104,585 + Echvi_4255 0.81 +0.4
5,104,651 - Echvi_4255 0.85 +0.9
5,104,745 - -0.5
5,104,752 + +1.0
5,104,770 - -0.2
5,104,775 + +0.4
5,104,776 - -0.4
5,104,777 + -0.2
5,104,875 + -1.3
5,104,887 + -2.3
5,104,888 - -2.4
5,104,943 + -0.2
5,104,986 + +1.0
5,105,019 + -1.8
5,105,084 + -2.7
5,105,085 - -0.7
5,105,085 - -0.1
5,105,086 + +0.5
5,105,188 + +1.4
5,105,272 + Echvi_4256 0.13 -0.6
5,105,342 - Echvi_4256 0.15 +0.3
5,105,366 - Echvi_4256 0.16 -0.7
5,105,366 - Echvi_4256 0.16 -2.1
5,105,370 + Echvi_4256 0.16 -0.4
5,105,446 + Echvi_4256 0.19 -0.5
5,105,447 - Echvi_4256 0.19 -0.0
5,105,451 + Echvi_4256 0.19 -0.1
5,105,452 - Echvi_4256 0.19 -0.0
5,105,596 + Echvi_4256 0.24 -1.1
5,105,596 + Echvi_4256 0.24 -0.3
5,105,597 - Echvi_4256 0.24 +0.3
5,105,630 + Echvi_4256 0.25 -1.1
5,105,652 + Echvi_4256 0.26 -0.1
5,105,652 + Echvi_4256 0.26 -0.8
5,105,652 + Echvi_4256 0.26 -1.3
5,105,652 + Echvi_4256 0.26 -0.6
5,105,653 - Echvi_4256 0.26 +1.3
5,105,668 + Echvi_4256 0.27 -0.9
5,105,669 - Echvi_4256 0.27 +0.0
5,105,698 + Echvi_4256 0.28 +0.8
5,105,723 + Echvi_4256 0.28 -0.7
5,105,726 + Echvi_4256 0.29 +3.0
5,105,749 + Echvi_4256 0.29 +0.4
5,105,749 + Echvi_4256 0.29 +1.0
5,105,783 + Echvi_4256 0.31 +0.4
5,105,805 - Echvi_4256 0.31 -1.7
5,105,808 - Echvi_4256 0.31 -0.5
5,105,808 - Echvi_4256 0.31 -0.5
5,105,808 - Echvi_4256 0.31 -0.5
5,105,885 + Echvi_4256 0.34 +0.3
5,105,885 + Echvi_4256 0.34 -1.7
5,105,885 + Echvi_4256 0.34 +0.0
5,105,885 + Echvi_4256 0.34 +0.1
5,105,886 - Echvi_4256 0.34 +0.3
5,105,972 - Echvi_4256 0.37 +0.3
5,106,000 - Echvi_4256 0.38 +0.1
5,106,001 + Echvi_4256 0.38 +0.3
5,106,002 - Echvi_4256 0.38 +0.2
5,106,205 + Echvi_4256 0.46 +1.0
5,106,205 + Echvi_4256 0.46 +0.1
5,106,206 - Echvi_4256 0.46 -0.5
5,106,209 + Echvi_4256 0.46 -0.5
5,106,210 - Echvi_4256 0.46 +0.2
5,106,223 + Echvi_4256 0.46 +0.5
5,106,223 + Echvi_4256 0.46 -0.5
5,106,224 - Echvi_4256 0.46 +1.3
5,106,286 - Echvi_4256 0.48 +1.1
5,106,360 + Echvi_4256 0.51 -0.4
5,106,360 + Echvi_4256 0.51 +1.3
5,106,361 - Echvi_4256 0.51 +1.9
5,106,361 - Echvi_4256 0.51 -2.4
5,106,431 + Echvi_4256 0.54 +0.3
5,106,433 + Echvi_4256 0.54 +0.5
5,106,433 + Echvi_4256 0.54 -0.5
5,106,434 - Echvi_4256 0.54 -0.6
5,106,473 - Echvi_4256 0.55 +0.5
5,106,547 - Echvi_4256 0.58 +1.1
5,106,620 + Echvi_4256 0.60 +1.2
5,106,620 + Echvi_4256 0.60 +0.1
5,106,620 + Echvi_4256 0.60 +0.7
5,106,620 + Echvi_4256 0.60 +0.6
5,106,620 + Echvi_4256 0.60 +1.7
5,106,623 - Echvi_4256 0.60 +0.3
5,106,757 + Echvi_4256 0.65 +0.7
5,106,757 + Echvi_4256 0.65 -1.3
5,106,757 + Echvi_4256 0.65 +1.2
5,106,758 - Echvi_4256 0.65 -0.0
5,106,780 + Echvi_4256 0.66 +0.3
5,106,899 + Echvi_4256 0.70 +0.9
5,106,947 - Echvi_4256 0.72 +0.3
5,106,983 + Echvi_4256 0.73 +1.6
5,106,983 + Echvi_4256 0.73 -0.1
5,107,133 - Echvi_4256 0.78 -0.1
5,107,133 - Echvi_4256 0.78 -1.1
5,107,150 + Echvi_4256 0.79 -1.4
5,107,258 - Echvi_4256 0.83 -0.4
5,107,291 - Echvi_4256 0.84 +0.9
5,107,291 - Echvi_4256 0.84 -0.1
5,107,317 + Echvi_4256 0.85 +0.3
5,107,317 + Echvi_4256 0.85 -1.5
5,107,318 - Echvi_4256 0.85 +0.0
5,107,318 - Echvi_4256 0.85 +0.9
5,107,371 + Echvi_4256 0.87 +0.0
5,107,423 - Echvi_4256 0.89 -0.2
5,107,497 - -2.4
5,107,542 + +0.6
5,107,584 - -1.1
5,107,589 - -1.9
5,107,769 - -0.7
5,107,869 + +0.2
5,107,873 + +1.0
5,107,874 - -0.5
5,107,906 + -0.1
5,107,906 + +0.5
5,107,912 + -2.5
5,107,913 - +0.6
5,107,913 - +1.2
5,107,986 + +0.6
5,108,120 + Echvi_4257 0.16 -1.3
5,108,134 + Echvi_4257 0.17 +2.2
5,108,134 + Echvi_4257 0.17 +0.6
5,108,154 + Echvi_4257 0.18 +0.9
5,108,154 + Echvi_4257 0.18 -0.3
5,108,154 + Echvi_4257 0.18 +0.7
5,108,154 + Echvi_4257 0.18 -0.6
5,108,155 - Echvi_4257 0.18 -0.0
5,108,378 + Echvi_4257 0.31 +0.4
5,108,437 - Echvi_4257 0.35 -1.3
5,108,443 + Echvi_4257 0.35 -0.6
5,108,480 + Echvi_4257 0.37 -2.2
5,108,480 + Echvi_4257 0.37 -1.3
5,108,492 - Echvi_4257 0.38 -0.5
5,108,511 + Echvi_4257 0.39 -0.7
5,108,511 + Echvi_4257 0.39 +0.4
5,108,539 + Echvi_4257 0.41 +0.8
5,108,587 + Echvi_4257 0.43 +0.9
5,108,685 + Echvi_4257 0.49 +0.5
5,108,686 - Echvi_4257 0.49 +0.7

Or see this region's nucleotide sequence