Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3482 and Echvi_3483 are separated by 1 nucleotides Echvi_3483 and Echvi_3484 are separated by 131 nucleotides Echvi_3484 and Echvi_3485 are separated by 182 nucleotides
Echvi_3482: Echvi_3482 - folylpolyglutamate synthase/dihydrofolate synthase, at 4,122,554 to 4,123,846
_3482
Echvi_3483: Echvi_3483 - tRNA (guanine-N(7)-)-methyltransferase, at 4,123,848 to 4,124,507
_3483
Echvi_3484: Echvi_3484 - hypothetical protein, at 4,124,639 to 4,125,193
_3484
Echvi_3485: Echvi_3485 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,125,376 to 4,125,945
_3485
Position (kb) 4123
4124
4125 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4123.859 kb on + strand at 4123.961 kb on + strand, within Echvi_3483 at 4123.962 kb on - strand, within Echvi_3483 at 4123.982 kb on - strand, within Echvi_3483 at 4124.035 kb on - strand, within Echvi_3483 at 4124.256 kb on - strand, within Echvi_3483 at 4124.271 kb on + strand, within Echvi_3483 at 4124.271 kb on + strand, within Echvi_3483 at 4124.271 kb on + strand, within Echvi_3483 at 4124.272 kb on - strand, within Echvi_3483 at 4124.337 kb on + strand, within Echvi_3483 at 4124.337 kb on + strand, within Echvi_3483 at 4124.339 kb on + strand, within Echvi_3483 at 4124.339 kb on + strand, within Echvi_3483 at 4124.339 kb on + strand, within Echvi_3483 at 4124.339 kb on + strand, within Echvi_3483 at 4124.340 kb on - strand, within Echvi_3483 at 4124.340 kb on - strand, within Echvi_3483 at 4124.340 kb on - strand, within Echvi_3483 at 4124.408 kb on + strand, within Echvi_3483 at 4124.502 kb on - strand at 4124.522 kb on - strand at 4124.578 kb on + strand at 4124.579 kb on - strand at 4124.625 kb on + strand at 4124.626 kb on - strand at 4124.626 kb on - strand at 4124.632 kb on + strand at 4124.727 kb on + strand, within Echvi_3484 at 4124.744 kb on + strand, within Echvi_3484 at 4124.746 kb on + strand, within Echvi_3484 at 4124.879 kb on - strand, within Echvi_3484 at 4124.922 kb on - strand, within Echvi_3484 at 4124.922 kb on - strand, within Echvi_3484 at 4124.922 kb on - strand, within Echvi_3484 at 4124.922 kb on - strand, within Echvi_3484 at 4124.939 kb on + strand, within Echvi_3484 at 4124.966 kb on + strand, within Echvi_3484 at 4124.985 kb on + strand, within Echvi_3484 at 4124.985 kb on + strand, within Echvi_3484 at 4125.016 kb on + strand, within Echvi_3484 at 4125.053 kb on + strand, within Echvi_3484 at 4125.084 kb on - strand, within Echvi_3484 at 4125.085 kb on + strand, within Echvi_3484 at 4125.116 kb on + strand, within Echvi_3484 at 4125.116 kb on + strand, within Echvi_3484 at 4125.117 kb on - strand, within Echvi_3484 at 4125.154 kb on + strand at 4125.155 kb on - strand at 4125.155 kb on - strand at 4125.155 kb on - strand at 4125.156 kb on + strand at 4125.157 kb on - strand at 4125.157 kb on - strand at 4125.179 kb on - strand at 4125.199 kb on - strand at 4125.347 kb on + strand at 4125.347 kb on + strand at 4125.348 kb on - strand at 4125.348 kb on - strand at 4125.354 kb on - strand at 4125.464 kb on + strand, within Echvi_3485
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 4,123,859 + -0.7 4,123,961 + Echvi_3483 0.17 -1.6 4,123,962 - Echvi_3483 0.17 -1.2 4,123,982 - Echvi_3483 0.20 +1.3 4,124,035 - Echvi_3483 0.28 +0.2 4,124,256 - Echvi_3483 0.62 +0.9 4,124,271 + Echvi_3483 0.64 +0.9 4,124,271 + Echvi_3483 0.64 +1.7 4,124,271 + Echvi_3483 0.64 -1.9 4,124,272 - Echvi_3483 0.64 -1.9 4,124,337 + Echvi_3483 0.74 -0.8 4,124,337 + Echvi_3483 0.74 -1.2 4,124,339 + Echvi_3483 0.74 +0.6 4,124,339 + Echvi_3483 0.74 -1.3 4,124,339 + Echvi_3483 0.74 -1.8 4,124,339 + Echvi_3483 0.74 -1.1 4,124,340 - Echvi_3483 0.75 -0.0 4,124,340 - Echvi_3483 0.75 -2.1 4,124,340 - Echvi_3483 0.75 -0.9 4,124,408 + Echvi_3483 0.85 -0.4 4,124,502 - -0.2 4,124,522 - -0.2 4,124,578 + -0.5 4,124,579 - -0.8 4,124,625 + -0.3 4,124,626 - +0.3 4,124,626 - -0.0 4,124,632 + +0.2 4,124,727 + Echvi_3484 0.16 -0.9 4,124,744 + Echvi_3484 0.19 +1.9 4,124,746 + Echvi_3484 0.19 -1.8 4,124,879 - Echvi_3484 0.43 +0.4 4,124,922 - Echvi_3484 0.51 -0.6 4,124,922 - Echvi_3484 0.51 +0.1 4,124,922 - Echvi_3484 0.51 +0.5 4,124,922 - Echvi_3484 0.51 +1.9 4,124,939 + Echvi_3484 0.54 -0.1 4,124,966 + Echvi_3484 0.59 +0.5 4,124,985 + Echvi_3484 0.62 +0.2 4,124,985 + Echvi_3484 0.62 +0.2 4,125,016 + Echvi_3484 0.68 +1.1 4,125,053 + Echvi_3484 0.75 +0.9 4,125,084 - Echvi_3484 0.80 -1.1 4,125,085 + Echvi_3484 0.80 -0.7 4,125,116 + Echvi_3484 0.86 +1.9 4,125,116 + Echvi_3484 0.86 +0.4 4,125,117 - Echvi_3484 0.86 +0.3 4,125,154 + +0.3 4,125,155 - -0.1 4,125,155 - -0.5 4,125,155 - +1.9 4,125,156 + +0.4 4,125,157 - +0.3 4,125,157 - -0.1 4,125,179 - -0.5 4,125,199 - -0.4 4,125,347 + +0.7 4,125,347 + +0.2 4,125,348 - +0.4 4,125,348 - +0.9 4,125,354 - +0.7 4,125,464 + Echvi_3485 0.15 -0.6
Or see this region's nucleotide sequence