Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3189

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
3,791,550	+		Echvi_3187	0.85	+0.5
3,791,550	+		Echvi_3187	0.85	-0.2
3,791,551	-		Echvi_3187	0.86	-0.8
3,791,551	-		Echvi_3187	0.86	-0.1
3,791,551	-		Echvi_3187	0.86	+0.0
3,791,551	-		Echvi_3187	0.86	-0.1
3,791,551	-		Echvi_3187	0.86	+1.4
3,791,551	-		Echvi_3187	0.86	+0.5
3,791,551	-		Echvi_3187	0.86	-0.0
3,791,551	-		Echvi_3187	0.86	+0.7
3,791,557	-		Echvi_3187	0.86	+0.4
3,791,557	-		Echvi_3187	0.86	-1.6
3,791,611	+				+0.8
3,791,689	+				-1.4
3,791,702	+				-0.3
3,791,705	+				+0.6
3,791,706	-				+2.3
3,791,706	-				+0.4
3,791,706	-				+1.6
3,791,706	-				-0.3
3,791,758	+				+0.6
3,791,758	+				-1.2
3,791,759	-				-0.2
3,791,798	+		Echvi_3188	0.11	+0.4
3,791,818	+		Echvi_3188	0.13	+0.2
3,791,832	+		Echvi_3188	0.15	-1.0
3,791,832	+		Echvi_3188	0.15	-3.2
3,791,832	+		Echvi_3188	0.15	+0.2
3,791,942	-				+0.2
3,791,942	-		Echvi_3188	0.29	-0.5
3,791,951	+		Echvi_3188	0.30	+0.2
3,791,951	+		Echvi_3188	0.30	-0.5
3,791,955	+		Echvi_3188	0.30	-1.8
3,791,955	+		Echvi_3188	0.30	+0.8
3,791,980	+		Echvi_3188	0.34	+0.5
3,791,983	+		Echvi_3188	0.34	+1.1
3,791,983	+		Echvi_3188	0.34	-0.4
3,792,097	-		Echvi_3188	0.48	-0.9
3,792,194	+		Echvi_3188	0.60	+0.4
3,792,200	+		Echvi_3188	0.61	-1.4
3,792,200	+		Echvi_3188	0.61	-0.3
3,792,201	-		Echvi_3188	0.61	+1.1
3,792,201	-		Echvi_3188	0.61	-0.0
3,792,256	+		Echvi_3188	0.68	+0.2
3,792,256	+		Echvi_3188	0.68	-0.8
3,792,256	+		Echvi_3188	0.68	-0.2
3,792,256	+		Echvi_3188	0.68	+1.8
3,792,257	-		Echvi_3188	0.68	-0.4
3,792,260	+		Echvi_3188	0.68	-0.7
3,792,260	+		Echvi_3188	0.68	+0.2
3,792,261	-		Echvi_3188	0.69	+1.0
3,792,261	-		Echvi_3188	0.69	+0.8
3,792,261	-		Echvi_3188	0.69	+0.5
3,792,282	+		Echvi_3188	0.71	-0.3
3,792,290	+		Echvi_3188	0.72	+1.0
3,792,290	+		Echvi_3188	0.72	-0.3
3,792,319	-		Echvi_3188	0.76	-1.5
3,792,326	-		Echvi_3188	0.77	-1.0
3,792,326	-		Echvi_3188	0.77	+0.0
3,792,326	-		Echvi_3188	0.77	-0.1
3,792,340	-		Echvi_3188	0.78	-1.5
3,792,343	+				+0.8
3,792,376	+		Echvi_3188	0.83	+0.5
3,792,388	+		Echvi_3188	0.84	+0.5
3,792,423	+		Echvi_3188	0.89	+1.4
3,792,424	-				+0.8
3,792,478	+				-0.4
3,792,499	+				-0.2
3,792,637	+		Echvi_3189	0.51	-1.6
3,792,642	+		Echvi_3189	0.53	-1.2
3,792,776	+				-0.2
3,792,808	+				+2.1
3,792,808	+				-0.9
3,792,809	-				+0.5
3,792,809	-				-0.2
3,792,809	-				+0.2
3,792,810	+				+1.0
3,792,810	+				-0.6
3,792,811	-				+2.1
3,792,812	+				+0.5
3,792,814	+				-0.7
3,792,814	+				-0.3
3,792,815	-				-0.3
3,792,815	-				+1.2
3,792,815	-				-1.0
3,792,891	-		Echvi_3190	0.12	+0.9
3,792,895	+		Echvi_3190	0.12	+0.5
3,792,898	+		Echvi_3190	0.13	-0.0
3,792,898	+		Echvi_3190	0.13	+0.4
3,792,898	+		Echvi_3190	0.13	+0.4
3,792,899	-		Echvi_3190	0.13	-1.4
3,792,979	+		Echvi_3190	0.26	-2.5
3,793,067	+		Echvi_3190	0.40	-1.6
3,793,067	+		Echvi_3190	0.40	-2.0
3,793,068	-		Echvi_3190	0.40	-0.0
3,793,208	-		Echvi_3190	0.63	-0.3
3,793,224	+		Echvi_3190	0.65	-1.5
3,793,224	+		Echvi_3190	0.65	-1.0
3,793,227	+		Echvi_3190	0.66	-1.4
3,793,289	+		Echvi_3190	0.76	+3.4
3,793,290	-		Echvi_3190	0.76	-0.5
3,793,317	+		Echvi_3190	0.80	-0.0
3,793,361	+		Echvi_3190	0.87	+0.2
3,793,372	+		Echvi_3190	0.89	-0.5
3,793,432	-				+0.3
3,793,436	+				-0.3
3,793,437	-				+0.9
3,793,446	-				+0.5
3,793,449	-				-0.8
3,793,449	-				-1.4
3,793,535	-		Echvi_3191	0.25	-1.2
3,793,535	-		Echvi_3191	0.25	+3.1
3,793,541	+		Echvi_3191	0.26	-0.7
3,793,552	-		Echvi_3191	0.29	-0.7
3,793,552	-				+1.8
3,793,664	+		Echvi_3191	0.57	+1.2
3,793,683	-		Echvi_3191	0.62	-0.9
3,793,707	-		Echvi_3191	0.68	-0.2