Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0845

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0844 and Echvi_0845 are separated by 35 nucleotidesEchvi_0845 and Echvi_0846 are separated by 425 nucleotides Echvi_0844: Echvi_0844 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 964,626 to 966,128 _0844 Echvi_0845: Echvi_0845 - hypothetical protein, at 966,164 to 966,709 _0845 Echvi_0846: Echvi_0846 - hypothetical protein, at 967,135 to 970,137 _0846 Position (kb) 966 967Strain fitness (log2 ratio) -2 -1 0 1 2at 966.130 kb on - strandat 966.159 kb on + strandat 966.159 kb on + strandat 966.159 kb on + strandat 966.228 kb on + strand, within Echvi_0845at 966.229 kb on - strand, within Echvi_0845at 966.233 kb on - strand, within Echvi_0845at 966.236 kb on + strand, within Echvi_0845at 966.394 kb on + strand, within Echvi_0845at 966.394 kb on + strand, within Echvi_0845at 966.395 kb on - strand, within Echvi_0845at 966.400 kb on + strand, within Echvi_0845at 966.456 kb on - strand, within Echvi_0845at 966.501 kb on + strand, within Echvi_0845at 966.501 kb on + strand, within Echvi_0845at 966.502 kb on - strand, within Echvi_0845at 966.507 kb on - strand, within Echvi_0845at 966.532 kb on - strand, within Echvi_0845at 966.572 kb on + strand, within Echvi_0845at 966.632 kb on + strand, within Echvi_0845at 966.667 kb on - strandat 966.688 kb on - strandat 966.707 kb on + strandat 966.734 kb on + strandat 966.751 kb on + strandat 966.752 kb on - strandat 966.752 kb on - strandat 966.752 kb on - strandat 966.752 kb on - strandat 966.762 kb on + strandat 966.763 kb on - strandat 966.768 kb on - strandat 966.779 kb on + strandat 966.806 kb on + strandat 966.814 kb on + strandat 966.850 kb on + strandat 966.863 kb on - strandat 966.866 kb on + strandat 966.886 kb on + strandat 966.886 kb on + strandat 966.887 kb on - strandat 966.887 kb on - strandat 966.925 kb on + strandat 966.925 kb on + strandat 966.931 kb on + strandat 966.931 kb on + strandat 966.935 kb on + strandat 966.936 kb on - strandat 966.936 kb on - strandat 966.936 kb on - strandat 966.948 kb on - strandat 967.011 kb on + strandat 967.012 kb on - strandat 967.012 kb on - strandat 967.012 kb on - strandat 967.016 kb on - strandat 967.070 kb on + strandat 967.070 kb on + strandat 967.070 kb on + strandat 967.071 kb on - strandat 967.108 kb on - strandat 967.125 kb on - strandat 967.125 kb on - strandat 967.125 kb on - strandat 967.132 kb on - strandat 967.132 kb on - strandat 967.132 kb on - strandat 967.132 kb on - strandat 967.136 kb on + strandat 967.137 kb on - strandat 967.137 kb on - strandat 967.258 kb on - strandat 967.258 kb on - strandat 967.324 kb on - strandat 967.324 kb on - strandat 967.356 kb on + strandat 967.357 kb on - strandat 967.445 kb on + strand, within Echvi_0846at 967.445 kb on + strand, within Echvi_0846at 967.446 kb on - strand, within Echvi_0846at 967.446 kb on - strand, within Echvi_0846at 967.446 kb on - strand, within Echvi_0846at 967.446 kb on - strand, within Echvi_0846at 967.446 kb on - strand, within Echvi_0846at 967.513 kb on - strand, within Echvi_0846at 967.585 kb on - strand, within Echvi_0846at 967.612 kb on - strand, within Echvi_0846at 967.612 kb on - strand, within Echvi_0846at 967.614 kb on + strand, within Echvi_0846at 967.614 kb on + strand, within Echvi_0846at 967.704 kb on + strand, within Echvi_0846at 967.705 kb on - strand, within Echvi_0846

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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966,130 - -0.2
966,159 + +1.0
966,159 + -0.3
966,159 + +0.8
966,228 + Echvi_0845 0.12 -0.2
966,229 - Echvi_0845 0.12 +0.0
966,233 - Echvi_0845 0.13 -0.3
966,236 + Echvi_0845 0.13 -0.3
966,394 + Echvi_0845 0.42 +0.3
966,394 + Echvi_0845 0.42 -1.2
966,395 - Echvi_0845 0.42 -0.8
966,400 + Echvi_0845 0.43 -0.9
966,456 - Echvi_0845 0.53 -0.3
966,501 + Echvi_0845 0.62 -1.1
966,501 + Echvi_0845 0.62 +0.5
966,502 - Echvi_0845 0.62 +0.4
966,507 - Echvi_0845 0.63 -1.3
966,532 - Echvi_0845 0.67 +1.7
966,572 + Echvi_0845 0.75 -1.1
966,632 + Echvi_0845 0.86 -0.5
966,667 - -0.5
966,688 - +0.0
966,707 + -0.0
966,734 + -1.6
966,751 + +1.0
966,752 - -1.0
966,752 - -0.3
966,752 - +1.5
966,752 - +0.2
966,762 + -0.1
966,763 - -0.0
966,768 - -0.2
966,779 + -0.3
966,806 + +0.7
966,814 + -0.0
966,850 + +0.8
966,863 - -1.2
966,866 + -1.5
966,886 + +0.7
966,886 + -0.8
966,887 - +0.1
966,887 - +0.1
966,925 + +0.7
966,925 + +2.0
966,931 + -0.5
966,931 + +1.1
966,935 + +0.7
966,936 - -0.5
966,936 - -0.2
966,936 - -0.4
966,948 - +1.2
967,011 + +2.3
967,012 - +0.4
967,012 - -0.8
967,012 - +1.5
967,016 - +0.7
967,070 + -0.4
967,070 + -0.5
967,070 + +0.5
967,071 - -0.8
967,108 - -0.0
967,125 - +0.2
967,125 - -0.1
967,125 - +1.0
967,132 - +0.6
967,132 - -1.6
967,132 - +1.0
967,132 - +0.6
967,136 + -0.1
967,137 - +1.4
967,137 - -1.8
967,258 - +2.0
967,258 - +0.4
967,324 - -0.4
967,324 - +0.6
967,356 + +0.2
967,357 - +1.9
967,445 + Echvi_0846 0.10 +0.8
967,445 + Echvi_0846 0.10 +0.7
967,446 - Echvi_0846 0.10 +0.3
967,446 - Echvi_0846 0.10 +0.8
967,446 - Echvi_0846 0.10 -0.3
967,446 - Echvi_0846 0.10 -0.2
967,446 - Echvi_0846 0.10 +1.9
967,513 - Echvi_0846 0.13 +0.8
967,585 - Echvi_0846 0.15 +0.3
967,612 - Echvi_0846 0.16 -1.0
967,612 - Echvi_0846 0.16 -0.0
967,614 + Echvi_0846 0.16 -0.8
967,614 + Echvi_0846 0.16 -0.8
967,704 + Echvi_0846 0.19 +0.6
967,705 - Echvi_0846 0.19 -0.4

Or see this region's nucleotide sequence