Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0794

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0793 and Echvi_0794 are separated by 11 nucleotidesEchvi_0794 and Echvi_0795 overlap by 4 nucleotidesEchvi_0795 and Echvi_0796 are separated by 88 nucleotides Echvi_0793: Echvi_0793 - hypothetical protein, at 905,643 to 907,007 _0793 Echvi_0794: Echvi_0794 - choline/carnitine/betaine transport, at 907,019 to 908,608 _0794 Echvi_0795: Echvi_0795 - Universal stress protein UspA and related nucleotide-binding proteins, at 908,605 to 909,462 _0795 Echvi_0796: Echvi_0796 - hypothetical protein, at 909,551 to 909,703 _0796 Position (kb) 907 908 909Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 906.057 kb on + strand, within Echvi_0793at 906.058 kb on - strand, within Echvi_0793at 906.067 kb on + strand, within Echvi_0793at 906.068 kb on - strand, within Echvi_0793at 906.080 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.090 kb on + strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.091 kb on - strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.092 kb on + strand, within Echvi_0793at 906.138 kb on + strand, within Echvi_0793at 906.139 kb on - strand, within Echvi_0793at 906.171 kb on + strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.172 kb on - strand, within Echvi_0793at 906.174 kb on + strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.175 kb on - strand, within Echvi_0793at 906.178 kb on + strand, within Echvi_0793at 906.303 kb on + strand, within Echvi_0793at 906.304 kb on - strand, within Echvi_0793at 906.308 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.324 kb on + strand, within Echvi_0793at 906.325 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.339 kb on - strand, within Echvi_0793at 906.350 kb on + strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793at 906.351 kb on - strand, within Echvi_0793at 906.390 kb on + strand, within Echvi_0793at 906.390 kb on + strand, within Echvi_0793at 906.391 kb on - strand, within Echvi_0793at 906.413 kb on - strand, within Echvi_0793at 906.441 kb on + strand, within Echvi_0793at 906.537 kb on + strand, within Echvi_0793at 906.537 kb on + strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.538 kb on - strand, within Echvi_0793at 906.540 kb on + strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.541 kb on - strand, within Echvi_0793at 906.546 kb on + strand, within Echvi_0793at 906.547 kb on - strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.548 kb on + strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.549 kb on - strand, within Echvi_0793at 906.619 kb on - strand, within Echvi_0793at 906.638 kb on + strand, within Echvi_0793at 906.638 kb on + strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.639 kb on - strand, within Echvi_0793at 906.645 kb on + strand, within Echvi_0793at 906.646 kb on - strand, within Echvi_0793at 906.709 kb on - strand, within Echvi_0793at 906.710 kb on + strand, within Echvi_0793at 906.764 kb on - strand, within Echvi_0793at 906.764 kb on - strand, within Echvi_0793at 906.831 kb on + strand, within Echvi_0793at 906.832 kb on - strand, within Echvi_0793at 906.852 kb on + strand, within Echvi_0793at 906.852 kb on + strand, within Echvi_0793at 906.913 kb on + strandat 906.913 kb on + strandat 906.918 kb on + strandat 906.986 kb on + strandat 906.986 kb on + strandat 906.987 kb on - strandat 906.989 kb on + strandat 906.990 kb on - strandat 906.991 kb on + strandat 906.992 kb on - strandat 906.992 kb on - strandat 906.992 kb on - strandat 906.997 kb on - strandat 906.999 kb on + strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.000 kb on - strandat 907.041 kb on + strandat 907.042 kb on - strandat 907.081 kb on + strandat 907.081 kb on + strandat 907.081 kb on + strandat 907.214 kb on + strand, within Echvi_0794at 907.214 kb on + strand, within Echvi_0794at 907.241 kb on - strandat 907.279 kb on + strand, within Echvi_0794at 907.365 kb on - strand, within Echvi_0794at 907.393 kb on + strand, within Echvi_0794at 907.394 kb on - strand, within Echvi_0794at 907.394 kb on - strand, within Echvi_0794at 907.470 kb on + strand, within Echvi_0794at 907.474 kb on - strand, within Echvi_0794at 907.582 kb on + strand, within Echvi_0794at 907.583 kb on - strand, within Echvi_0794at 907.583 kb on - strand, within Echvi_0794at 907.599 kb on + strand, within Echvi_0794at 907.666 kb on + strand, within Echvi_0794at 907.666 kb on + strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.667 kb on - strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.670 kb on + strand, within Echvi_0794at 907.707 kb on + strand, within Echvi_0794at 907.708 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.798 kb on - strand, within Echvi_0794at 907.848 kb on + strand, within Echvi_0794at 907.908 kb on + strand, within Echvi_0794at 907.984 kb on - strand, within Echvi_0794at 908.011 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.020 kb on + strand, within Echvi_0794at 908.021 kb on - strand, within Echvi_0794at 908.062 kb on - strand, within Echvi_0794at 908.308 kb on + strand, within Echvi_0794at 908.347 kb on + strand, within Echvi_0794at 908.348 kb on - strand, within Echvi_0794at 908.348 kb on - strand, within Echvi_0794at 908.372 kb on - strand, within Echvi_0794at 908.385 kb on + strand, within Echvi_0794at 908.385 kb on + strand, within Echvi_0794at 908.386 kb on - strand, within Echvi_0794at 908.392 kb on - strand, within Echvi_0794at 908.671 kb on + strandat 908.671 kb on + strandat 908.674 kb on - strandat 908.902 kb on + strand, within Echvi_0795at 908.905 kb on - strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.076 kb on + strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.077 kb on - strand, within Echvi_0795at 909.212 kb on + strand, within Echvi_0795at 909.291 kb on + strand, within Echvi_0795at 909.292 kb on - strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.485 kb on - strandat 909.485 kb on - strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.488 kb on - strandat 909.488 kb on - strandat 909.500 kb on + strandat 909.518 kb on + strandat 909.526 kb on + strandat 909.593 kb on + strand, within Echvi_0796

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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906,057 + Echvi_0793 0.30 -0.8
906,058 - Echvi_0793 0.30 +1.5
906,067 + Echvi_0793 0.31 -0.1
906,068 - Echvi_0793 0.31 +0.6
906,080 + Echvi_0793 0.32 -0.9
906,090 + Echvi_0793 0.33 -0.5
906,090 + Echvi_0793 0.33 -0.5
906,090 + Echvi_0793 0.33 -1.0
906,090 + Echvi_0793 0.33 -1.5
906,090 + Echvi_0793 0.33 -0.0
906,091 - Echvi_0793 0.33 +0.1
906,091 - Echvi_0793 0.33 +0.2
906,092 + Echvi_0793 0.33 -1.8
906,092 + Echvi_0793 0.33 -2.9
906,092 + Echvi_0793 0.33 +1.2
906,138 + Echvi_0793 0.36 -0.4
906,139 - Echvi_0793 0.36 -0.5
906,171 + Echvi_0793 0.39 +0.6
906,172 - Echvi_0793 0.39 -0.0
906,172 - Echvi_0793 0.39 +1.4
906,174 + Echvi_0793 0.39 -0.3
906,175 - Echvi_0793 0.39 +1.2
906,175 - Echvi_0793 0.39 +0.7
906,178 + Echvi_0793 0.39 +1.5
906,303 + Echvi_0793 0.48 -0.7
906,304 - Echvi_0793 0.48 -0.4
906,308 + Echvi_0793 0.49 +0.4
906,324 + Echvi_0793 0.50 -0.5
906,324 + Echvi_0793 0.50 -0.0
906,325 - Echvi_0793 0.50 +1.5
906,339 - Echvi_0793 0.51 -1.3
906,339 - Echvi_0793 0.51 +0.5
906,350 + Echvi_0793 0.52 -1.8
906,351 - Echvi_0793 0.52 -0.5
906,351 - Echvi_0793 0.52 -1.5
906,390 + Echvi_0793 0.55 -2.6
906,390 + Echvi_0793 0.55 -1.0
906,391 - Echvi_0793 0.55 +2.2
906,413 - Echvi_0793 0.56 +0.2
906,441 + Echvi_0793 0.58 -3.3
906,537 + Echvi_0793 0.65 -0.9
906,537 + Echvi_0793 0.65 +1.5
906,538 - Echvi_0793 0.66 +1.3
906,538 - Echvi_0793 0.66 +0.2
906,538 - Echvi_0793 0.66 -0.4
906,538 - Echvi_0793 0.66 +1.9
906,538 - Echvi_0793 0.66 +0.1
906,538 - Echvi_0793 0.66 -0.4
906,538 - Echvi_0793 0.66 -0.4
906,540 + Echvi_0793 0.66 -0.3
906,541 - Echvi_0793 0.66 -0.2
906,541 - Echvi_0793 0.66 +0.2
906,541 - Echvi_0793 0.66 -0.7
906,541 - Echvi_0793 0.66 +0.4
906,546 + Echvi_0793 0.66 +0.8
906,547 - Echvi_0793 0.66 -0.5
906,548 + Echvi_0793 0.66 -0.3
906,548 + Echvi_0793 0.66 -0.4
906,548 + Echvi_0793 0.66 +0.2
906,548 + Echvi_0793 0.66 -1.0
906,548 + Echvi_0793 0.66 -0.6
906,548 + Echvi_0793 0.66 +0.5
906,548 + Echvi_0793 0.66 -0.8
906,548 + Echvi_0793 0.66 -0.8
906,549 - Echvi_0793 0.66 -1.8
906,549 - Echvi_0793 0.66 +0.3
906,549 - Echvi_0793 0.66 -0.3
906,549 - Echvi_0793 0.66 -1.5
906,549 - Echvi_0793 0.66 +0.2
906,549 - Echvi_0793 0.66 -0.8
906,619 - Echvi_0793 0.72 -0.6
906,638 + Echvi_0793 0.73 +1.2
906,638 + Echvi_0793 0.73 +0.1
906,639 - Echvi_0793 0.73 +0.5
906,639 - Echvi_0793 0.73 +1.2
906,639 - Echvi_0793 0.73 -2.0
906,639 - Echvi_0793 0.73 -0.1
906,645 + Echvi_0793 0.73 +0.3
906,646 - Echvi_0793 0.73 +0.2
906,709 - Echvi_0793 0.78 +0.1
906,710 + Echvi_0793 0.78 +0.4
906,764 - Echvi_0793 0.82 -1.0
906,764 - Echvi_0793 0.82 -0.5
906,831 + Echvi_0793 0.87 -0.5
906,832 - Echvi_0793 0.87 +1.1
906,852 + Echvi_0793 0.89 -2.2
906,852 + Echvi_0793 0.89 -3.4
906,913 + -0.8
906,913 + +0.7
906,918 + +0.5
906,986 + -0.9
906,986 + +0.7
906,987 - -0.1
906,989 + -0.7
906,990 - -0.1
906,991 + +1.5
906,992 - +0.4
906,992 - -0.1
906,992 - -1.0
906,997 - +2.0
906,999 + +0.4
907,000 - -1.1
907,000 - +0.1
907,000 - -0.3
907,000 - +0.3
907,041 + -1.1
907,042 - -0.1
907,081 + +0.5
907,081 + +0.0
907,081 + +1.9
907,214 + Echvi_0794 0.12 +1.0
907,214 + Echvi_0794 0.12 -0.2
907,241 - +0.5
907,279 + Echvi_0794 0.16 +1.5
907,365 - Echvi_0794 0.22 -1.8
907,393 + Echvi_0794 0.24 +0.7
907,394 - Echvi_0794 0.24 +1.2
907,394 - Echvi_0794 0.24 +0.2
907,470 + Echvi_0794 0.28 +1.2
907,474 - Echvi_0794 0.29 -1.3
907,582 + Echvi_0794 0.35 +1.3
907,583 - Echvi_0794 0.35 +1.4
907,583 - Echvi_0794 0.35 -0.2
907,599 + Echvi_0794 0.36 +1.0
907,666 + Echvi_0794 0.41 +0.5
907,666 + Echvi_0794 0.41 +0.7
907,667 - Echvi_0794 0.41 -0.6
907,667 - Echvi_0794 0.41 +0.0
907,667 - Echvi_0794 0.41 +1.0
907,670 + Echvi_0794 0.41 -2.5
907,670 + Echvi_0794 0.41 +1.1
907,707 + Echvi_0794 0.43 +0.6
907,708 - Echvi_0794 0.43 +0.4
907,798 - Echvi_0794 0.49 +1.2
907,798 - Echvi_0794 0.49 -0.8
907,848 + Echvi_0794 0.52 -0.0
907,908 + Echvi_0794 0.56 +1.4
907,984 - Echvi_0794 0.61 -1.0
908,011 + Echvi_0794 0.62 +0.5
908,020 + Echvi_0794 0.63 -4.2
908,020 + Echvi_0794 0.63 +1.6
908,020 + Echvi_0794 0.63 +0.4
908,021 - Echvi_0794 0.63 +0.5
908,062 - Echvi_0794 0.66 +0.3
908,308 + Echvi_0794 0.81 +1.2
908,347 + Echvi_0794 0.84 +1.3
908,348 - Echvi_0794 0.84 +1.5
908,348 - Echvi_0794 0.84 -0.6
908,372 - Echvi_0794 0.85 +0.1
908,385 + Echvi_0794 0.86 +1.2
908,385 + Echvi_0794 0.86 +0.7
908,386 - Echvi_0794 0.86 -1.9
908,392 - Echvi_0794 0.86 +0.4
908,671 + -0.0
908,671 + -0.8
908,674 - -0.5
908,902 + Echvi_0795 0.35 +0.5
908,905 - Echvi_0795 0.35 -1.0
909,076 + Echvi_0795 0.55 +0.0
909,076 + Echvi_0795 0.55 +1.0
909,076 + Echvi_0795 0.55 +0.5
909,076 + Echvi_0795 0.55 +1.5
909,076 + Echvi_0795 0.55 +1.2
909,077 - Echvi_0795 0.55 +0.1
909,077 - Echvi_0795 0.55 -0.1
909,077 - Echvi_0795 0.55 -0.3
909,077 - Echvi_0795 0.55 +0.4
909,212 + Echvi_0795 0.71 +0.5
909,291 + Echvi_0795 0.80 -1.5
909,292 - Echvi_0795 0.80 -0.0
909,303 + Echvi_0795 0.81 -0.6
909,303 + Echvi_0795 0.81 -0.3
909,304 - Echvi_0795 0.81 -0.5
909,304 - Echvi_0795 0.81 +0.2
909,304 - Echvi_0795 0.81 -0.7
909,304 - Echvi_0795 0.81 -1.2
909,304 - Echvi_0795 0.81 -0.9
909,485 - +1.7
909,485 - +0.2
909,487 + +0.5
909,487 + +1.0
909,487 + +1.6
909,488 - -0.2
909,488 - +0.3
909,500 + -1.3
909,518 + -0.2
909,526 + +2.6
909,593 + Echvi_0796 0.27 -0.5

Or see this region's nucleotide sequence