Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0740

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0739 and Echvi_0740 are separated by 62 nucleotidesEchvi_0740 and Echvi_0741 are separated by 112 nucleotidesEchvi_0741 and Echvi_0742 are separated by 5 nucleotides Echvi_0739: Echvi_0739 - hypothetical protein, at 828,745 to 829,599 _0739 Echvi_0740: Echvi_0740 - Lysophospholipase L1 and related esterases, at 829,662 to 830,321 _0740 Echvi_0741: Echvi_0741 - Putative NADPH-quinone reductase (modulator of drug activity B), at 830,434 to 831,012 _0741 Echvi_0742: Echvi_0742 - hypothetical protein, at 831,018 to 831,356 _0742 Position (kb) 829 830 831Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 828.687 kb on - strandat 828.776 kb on - strandat 828.779 kb on + strandat 828.866 kb on - strand, within Echvi_0739at 828.878 kb on + strand, within Echvi_0739at 828.879 kb on - strand, within Echvi_0739at 828.884 kb on + strand, within Echvi_0739at 828.884 kb on + strand, within Echvi_0739at 828.885 kb on - strand, within Echvi_0739at 828.923 kb on + strand, within Echvi_0739at 828.924 kb on - strand, within Echvi_0739at 829.011 kb on + strand, within Echvi_0739at 829.021 kb on - strand, within Echvi_0739at 829.021 kb on - strand, within Echvi_0739at 829.025 kb on + strand, within Echvi_0739at 829.026 kb on - strand, within Echvi_0739at 829.032 kb on + strand, within Echvi_0739at 829.034 kb on + strand, within Echvi_0739at 829.035 kb on - strand, within Echvi_0739at 829.048 kb on + strand, within Echvi_0739at 829.049 kb on - strand, within Echvi_0739at 829.049 kb on - strand, within Echvi_0739at 829.054 kb on - strand, within Echvi_0739at 829.155 kb on + strand, within Echvi_0739at 829.156 kb on - strand, within Echvi_0739at 829.157 kb on + strand, within Echvi_0739at 829.157 kb on + strand, within Echvi_0739at 829.158 kb on - strand, within Echvi_0739at 829.170 kb on + strand, within Echvi_0739at 829.174 kb on + strand, within Echvi_0739at 829.188 kb on + strand, within Echvi_0739at 829.224 kb on + strand, within Echvi_0739at 829.429 kb on - strand, within Echvi_0739at 829.431 kb on - strand, within Echvi_0739at 829.441 kb on + strandat 829.442 kb on - strand, within Echvi_0739at 829.463 kb on + strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.484 kb on - strand, within Echvi_0739at 829.559 kb on + strandat 829.560 kb on - strandat 829.563 kb on + strandat 829.599 kb on + strandat 829.599 kb on + strandat 829.603 kb on + strandat 829.603 kb on + strandat 829.638 kb on + strandat 829.644 kb on + strandat 829.644 kb on + strandat 829.645 kb on - strandat 829.660 kb on - strandat 829.711 kb on + strandat 829.754 kb on + strandat 829.755 kb on - strand, within Echvi_0740at 829.757 kb on + strand, within Echvi_0740at 829.758 kb on - strand, within Echvi_0740at 829.854 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 830.013 kb on + strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.015 kb on + strand, within Echvi_0740at 830.016 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.192 kb on + strand, within Echvi_0740at 830.315 kb on + strandat 830.320 kb on - strandat 830.320 kb on - strandat 830.375 kb on + strandat 830.375 kb on + strandat 830.380 kb on + strandat 830.380 kb on + strandat 830.381 kb on - strandat 830.390 kb on + strandat 830.391 kb on - strandat 830.391 kb on - strandat 830.424 kb on - strandat 830.435 kb on + strandat 830.436 kb on - strandat 830.436 kb on - strandat 830.466 kb on + strandat 830.467 kb on - strandat 830.545 kb on + strand, within Echvi_0741at 830.545 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.610 kb on - strand, within Echvi_0741at 830.662 kb on + strand, within Echvi_0741at 830.677 kb on + strand, within Echvi_0741at 830.698 kb on - strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.745 kb on + strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.746 kb on - strand, within Echvi_0741at 830.824 kb on + strand, within Echvi_0741at 830.825 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.862 kb on - strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.866 kb on + strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.867 kb on - strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.942 kb on + strand, within Echvi_0741at 830.966 kb on + strandat 830.967 kb on - strandat 830.967 kb on - strandat 831.001 kb on + strandat 831.004 kb on - strandat 831.053 kb on + strand, within Echvi_0742at 831.054 kb on - strand, within Echvi_0742at 831.085 kb on + strand, within Echvi_0742at 831.086 kb on - strand, within Echvi_0742at 831.132 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.148 kb on - strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.183 kb on + strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.184 kb on - strand, within Echvi_0742at 831.185 kb on + strand, within Echvi_0742at 831.214 kb on - strand, within Echvi_0742at 831.220 kb on + strand, within Echvi_0742at 831.221 kb on - strand, within Echvi_0742at 831.226 kb on + strand, within Echvi_0742at 831.227 kb on - strand, within Echvi_0742at 831.228 kb on + strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.229 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.248 kb on - strand, within Echvi_0742at 831.268 kb on + strand, within Echvi_0742at 831.273 kb on + strand, within Echvi_0742

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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828,687 - +0.7
828,776 - +2.2
828,779 + -0.9
828,866 - Echvi_0739 0.14 +1.0
828,878 + Echvi_0739 0.16 +1.0
828,879 - Echvi_0739 0.16 +1.4
828,884 + Echvi_0739 0.16 +0.0
828,884 + Echvi_0739 0.16 -1.2
828,885 - Echvi_0739 0.16 -1.2
828,923 + Echvi_0739 0.21 +0.4
828,924 - Echvi_0739 0.21 +0.7
829,011 + Echvi_0739 0.31 +0.3
829,021 - Echvi_0739 0.32 +0.8
829,021 - Echvi_0739 0.32 +0.3
829,025 + Echvi_0739 0.33 +0.8
829,026 - Echvi_0739 0.33 -0.3
829,032 + Echvi_0739 0.34 -0.9
829,034 + Echvi_0739 0.34 -0.9
829,035 - Echvi_0739 0.34 -0.7
829,048 + Echvi_0739 0.35 +0.1
829,049 - Echvi_0739 0.36 +0.8
829,049 - Echvi_0739 0.36 +1.5
829,054 - Echvi_0739 0.36 +1.4
829,155 + Echvi_0739 0.48 -0.0
829,156 - Echvi_0739 0.48 +0.6
829,157 + Echvi_0739 0.48 +1.3
829,157 + Echvi_0739 0.48 +0.2
829,158 - Echvi_0739 0.48 -0.2
829,170 + Echvi_0739 0.50 +0.3
829,174 + Echvi_0739 0.50 +1.0
829,188 + Echvi_0739 0.52 -1.4
829,224 + Echvi_0739 0.56 +0.3
829,429 - Echvi_0739 0.80 +1.1
829,431 - Echvi_0739 0.80 +0.4
829,441 + +1.6
829,442 - Echvi_0739 0.82 +0.3
829,463 + Echvi_0739 0.84 +1.6
829,464 - Echvi_0739 0.84 +1.6
829,464 - Echvi_0739 0.84 -1.1
829,484 - Echvi_0739 0.86 +0.8
829,559 + +0.7
829,560 - +1.1
829,563 + +0.4
829,599 + -0.6
829,599 + +1.3
829,603 + +1.2
829,603 + +0.6
829,638 + -0.6
829,644 + +2.8
829,644 + +0.5
829,645 - -0.4
829,660 - -0.4
829,711 + +1.2
829,754 + +1.6
829,755 - Echvi_0740 0.14 -0.2
829,757 + Echvi_0740 0.14 -2.4
829,758 - Echvi_0740 0.15 +0.1
829,854 + Echvi_0740 0.29 -1.0
829,908 + Echvi_0740 0.37 +0.3
829,908 + Echvi_0740 0.37 +1.6
830,013 + Echvi_0740 0.53 +0.4
830,014 - Echvi_0740 0.53 -2.9
830,014 - Echvi_0740 0.53 -0.0
830,015 + Echvi_0740 0.53 -0.0
830,016 - Echvi_0740 0.54 +0.4
830,038 - Echvi_0740 0.57 +1.2
830,038 - Echvi_0740 0.57 -1.0
830,089 + Echvi_0740 0.65 +2.6
830,089 + Echvi_0740 0.65 +1.5
830,089 + Echvi_0740 0.65 +0.8
830,089 + Echvi_0740 0.65 +0.5
830,090 - Echvi_0740 0.65 -0.4
830,090 - Echvi_0740 0.65 +0.2
830,090 - Echvi_0740 0.65 -1.1
830,090 - Echvi_0740 0.65 +2.0
830,091 + Echvi_0740 0.65 +1.2
830,091 + Echvi_0740 0.65 -0.3
830,091 + Echvi_0740 0.65 -0.4
830,091 + Echvi_0740 0.65 -0.9
830,092 - Echvi_0740 0.65 +0.9
830,092 - Echvi_0740 0.65 +0.2
830,095 + Echvi_0740 0.66 -0.7
830,095 + Echvi_0740 0.66 -0.0
830,095 + Echvi_0740 0.66 -0.3
830,095 + Echvi_0740 0.66 +0.0
830,095 + Echvi_0740 0.66 +0.2
830,095 + Echvi_0740 0.66 +0.8
830,095 + Echvi_0740 0.66 +0.6
830,095 + Echvi_0740 0.66 +1.2
830,096 - Echvi_0740 0.66 -0.1
830,096 - Echvi_0740 0.66 +1.3
830,096 - Echvi_0740 0.66 -0.5
830,096 - Echvi_0740 0.66 +0.1
830,096 - Echvi_0740 0.66 -1.0
830,096 - Echvi_0740 0.66 -0.3
830,096 - Echvi_0740 0.66 +0.4
830,096 - Echvi_0740 0.66 +0.9
830,096 - Echvi_0740 0.66 -0.3
830,096 - Echvi_0740 0.66 +1.2
830,146 + Echvi_0740 0.73 +0.6
830,146 + Echvi_0740 0.73 -0.5
830,147 - Echvi_0740 0.73 -0.2
830,147 - Echvi_0740 0.73 +0.6
830,192 + Echvi_0740 0.80 -0.2
830,315 + +0.5
830,320 - +0.2
830,320 - -0.2
830,375 + +1.4
830,375 + -1.3
830,380 + -0.1
830,380 + +0.5
830,381 - -1.2
830,390 + -0.7
830,391 - -1.2
830,391 - +0.6
830,424 - +1.0
830,435 + -1.0
830,436 - -0.4
830,436 - +2.1
830,466 + +0.2
830,467 - -2.6
830,545 + Echvi_0741 0.19 -0.9
830,545 + Echvi_0741 0.19 +0.2
830,577 + Echvi_0741 0.25 -0.6
830,577 + Echvi_0741 0.25 -1.3
830,610 - Echvi_0741 0.30 -0.2
830,662 + Echvi_0741 0.39 +0.1
830,677 + Echvi_0741 0.42 -0.4
830,698 - Echvi_0741 0.46 -0.4
830,745 + Echvi_0741 0.54 +0.1
830,745 + Echvi_0741 0.54 -0.8
830,746 - Echvi_0741 0.54 +1.1
830,746 - Echvi_0741 0.54 +0.6
830,824 + Echvi_0741 0.67 -0.6
830,825 - Echvi_0741 0.68 -0.0
830,862 - Echvi_0741 0.74 +0.1
830,862 - Echvi_0741 0.74 -0.9
830,866 + Echvi_0741 0.75 +2.0
830,866 + Echvi_0741 0.75 -0.0
830,867 - Echvi_0741 0.75 -0.4
830,867 - Echvi_0741 0.75 +0.4
830,867 - Echvi_0741 0.75 +1.1
830,942 + Echvi_0741 0.88 -0.2
830,942 + Echvi_0741 0.88 -1.9
830,942 + Echvi_0741 0.88 -0.7
830,942 + Echvi_0741 0.88 +0.3
830,966 + -1.2
830,967 - -0.8
830,967 - -0.3
831,001 + -0.3
831,004 - +0.9
831,053 + Echvi_0742 0.10 -0.4
831,054 - Echvi_0742 0.11 -0.7
831,085 + Echvi_0742 0.20 -1.2
831,086 - Echvi_0742 0.20 -0.6
831,132 - Echvi_0742 0.34 +0.8
831,148 - Echvi_0742 0.38 +0.3
831,148 - Echvi_0742 0.38 +0.4
831,183 + Echvi_0742 0.49 +0.6
831,183 + Echvi_0742 0.49 +0.6
831,183 + Echvi_0742 0.49 +0.2
831,183 + Echvi_0742 0.49 +0.8
831,184 - Echvi_0742 0.49 +0.5
831,184 - Echvi_0742 0.49 -0.1
831,185 + Echvi_0742 0.49 +0.1
831,214 - Echvi_0742 0.58 +0.6
831,220 + Echvi_0742 0.60 +0.3
831,221 - Echvi_0742 0.60 -0.1
831,226 + Echvi_0742 0.61 -0.1
831,227 - Echvi_0742 0.62 -1.2
831,228 + Echvi_0742 0.62 +2.8
831,229 - Echvi_0742 0.62 -0.7
831,229 - Echvi_0742 0.62 -0.7
831,248 - Echvi_0742 0.68 +0.6
831,248 - Echvi_0742 0.68 +1.7
831,268 + Echvi_0742 0.74 -2.3
831,273 + Echvi_0742 0.75 +0.9

Or see this region's nucleotide sequence