Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0702

Experiment: m.b. Nalidixic 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0701 and Echvi_0702 are separated by 464 nucleotidesEchvi_0702 and Echvi_0703 overlap by 23 nucleotidesEchvi_0703 and Echvi_0704 are separated by 128 nucleotides Echvi_0701: Echvi_0701 - cysteinyl-tRNA synthetase, at 792,936 to 794,429 _0701 Echvi_0702: Echvi_0702 - hypothetical protein, at 794,894 to 796,072 _0702 Echvi_0703: Echvi_0703 - hypothetical protein, at 796,050 to 796,541 _0703 Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131 _0704 Position (kb) 794 795 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 794.445 kb on - strandat 794.468 kb on - strandat 794.484 kb on + strandat 794.485 kb on - strandat 794.491 kb on + strandat 794.531 kb on + strandat 794.531 kb on + strandat 794.531 kb on + strandat 794.564 kb on - strandat 794.566 kb on - strandat 794.588 kb on - strandat 794.604 kb on + strandat 794.605 kb on - strandat 794.731 kb on - strandat 794.782 kb on + strandat 794.791 kb on + strandat 794.798 kb on + strandat 794.865 kb on + strandat 794.866 kb on - strandat 794.893 kb on + strandat 794.893 kb on + strandat 794.894 kb on - strandat 794.894 kb on - strandat 794.901 kb on + strandat 794.902 kb on - strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.907 kb on + strandat 794.908 kb on - strandat 794.908 kb on - strandat 794.908 kb on - strandat 794.928 kb on - strandat 794.969 kb on - strandat 794.978 kb on + strandat 795.037 kb on - strand, within Echvi_0702at 795.067 kb on + strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.068 kb on - strand, within Echvi_0702at 795.144 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.156 kb on - strand, within Echvi_0702at 795.174 kb on - strand, within Echvi_0702at 795.200 kb on + strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.201 kb on - strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.203 kb on + strand, within Echvi_0702at 795.204 kb on - strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.221 kb on + strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.222 kb on - strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.287 kb on + strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.288 kb on - strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.291 kb on + strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.292 kb on - strand, within Echvi_0702at 795.344 kb on + strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.345 kb on - strand, within Echvi_0702at 795.392 kb on + strand, within Echvi_0702at 795.393 kb on - strand, within Echvi_0702at 795.395 kb on - strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.421 kb on + strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702at 795.422 kb on - strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.447 kb on + strand, within Echvi_0702at 795.448 kb on - strand, within Echvi_0702at 795.449 kb on + strand, within Echvi_0702at 795.449 kb on + strand, within Echvi_0702at 795.450 kb on - strand, within Echvi_0702at 795.455 kb on - strand, within Echvi_0702at 795.455 kb on - strand, within Echvi_0702at 795.534 kb on + strand, within Echvi_0702at 795.545 kb on - strand, within Echvi_0702at 795.566 kb on + strand, within Echvi_0702at 795.566 kb on + strand, within Echvi_0702at 795.574 kb on + strand, within Echvi_0702at 795.589 kb on + strand, within Echvi_0702at 795.589 kb on + strand, within Echvi_0702at 795.593 kb on + strand, within Echvi_0702at 795.594 kb on - strand, within Echvi_0702at 795.596 kb on - strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.600 kb on + strand, within Echvi_0702at 795.604 kb on + strand, within Echvi_0702at 795.605 kb on - strand, within Echvi_0702at 795.605 kb on - strand, within Echvi_0702at 795.616 kb on + strand, within Echvi_0702at 795.676 kb on - strand, within Echvi_0702at 795.690 kb on + strand, within Echvi_0702at 795.691 kb on - strand, within Echvi_0702at 795.735 kb on + strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.743 kb on - strand, within Echvi_0702at 795.770 kb on - strand, within Echvi_0702at 795.781 kb on + strand, within Echvi_0702at 795.801 kb on + strand, within Echvi_0702at 795.803 kb on + strand, within Echvi_0702at 795.809 kb on + strand, within Echvi_0702at 795.810 kb on - strand, within Echvi_0702at 795.813 kb on - strand, within Echvi_0702at 795.816 kb on + strand, within Echvi_0702at 795.827 kb on - strand, within Echvi_0702at 795.844 kb on + strand, within Echvi_0702at 795.845 kb on - strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.847 kb on + strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.848 kb on - strand, within Echvi_0702at 795.904 kb on + strand, within Echvi_0702at 795.905 kb on - strand, within Echvi_0702at 795.924 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.926 kb on + strand, within Echvi_0702at 795.958 kb on - strandat 796.001 kb on - strandat 796.015 kb on + strandat 796.016 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.024 kb on - strandat 796.071 kb on - strandat 796.074 kb on - strandat 796.094 kb on - strandat 796.120 kb on + strand, within Echvi_0703at 796.167 kb on + strand, within Echvi_0703at 796.168 kb on - strand, within Echvi_0703at 796.174 kb on + strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.175 kb on - strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.178 kb on + strand, within Echvi_0703at 796.179 kb on - strand, within Echvi_0703at 796.212 kb on + strand, within Echvi_0703at 796.213 kb on - strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.222 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.232 kb on + strand, within Echvi_0703at 796.257 kb on - strand, within Echvi_0703at 796.274 kb on + strand, within Echvi_0703at 796.275 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.337 kb on - strand, within Echvi_0703at 796.345 kb on - strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.401 kb on + strand, within Echvi_0703at 796.402 kb on - strand, within Echvi_0703at 796.433 kb on + strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.434 kb on - strand, within Echvi_0703at 796.463 kb on + strand, within Echvi_0703at 796.464 kb on - strand, within Echvi_0703at 796.486 kb on + strand, within Echvi_0703at 796.487 kb on - strand, within Echvi_0703at 796.512 kb on - strandat 796.539 kb on + strandat 796.540 kb on - strandat 796.540 kb on - strandat 796.557 kb on - strandat 796.558 kb on + strandat 796.570 kb on + strandat 796.570 kb on + strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.571 kb on - strandat 796.636 kb on + strandat 796.637 kb on - strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.648 kb on + strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.649 kb on - strandat 796.661 kb on + strandat 796.681 kb on + strandat 796.712 kb on - strandat 796.784 kb on - strand, within Echvi_0704at 796.784 kb on - strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.787 kb on + strand, within Echvi_0704at 796.788 kb on - strand, within Echvi_0704at 796.792 kb on - strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.797 kb on + strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.798 kb on - strand, within Echvi_0704at 796.826 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.864 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.927 kb on + strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.931 kb on - strand, within Echvi_0704at 796.936 kb on + strand, within Echvi_0704at 796.979 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704at 797.003 kb on - strand, within Echvi_0704

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
remove
794,445 - +0.4
794,468 - -0.7
794,484 + -0.6
794,485 - -1.3
794,491 + +0.4
794,531 + +0.8
794,531 + +0.5
794,531 + -1.3
794,564 - -0.1
794,566 - -0.4
794,588 - +1.0
794,604 + -1.5
794,605 - +1.0
794,731 - -0.6
794,782 + -0.1
794,791 + -0.3
794,798 + +1.1
794,865 + +0.2
794,866 - +1.3
794,893 + -0.2
794,893 + -0.8
794,894 - +1.6
794,894 - +1.3
794,901 + +0.2
794,902 - -1.1
794,907 + +0.5
794,907 + -1.7
794,907 + +0.1
794,907 + -0.5
794,908 - -0.4
794,908 - +1.4
794,908 - -0.1
794,928 - -1.0
794,969 - +0.2
794,978 + +0.5
795,037 - Echvi_0702 0.12 -1.0
795,067 + Echvi_0702 0.15 -1.2
795,068 - Echvi_0702 0.15 -0.7
795,068 - Echvi_0702 0.15 +0.9
795,144 - Echvi_0702 0.21 +0.4
795,156 - Echvi_0702 0.22 +0.9
795,156 - Echvi_0702 0.22 +2.3
795,174 - Echvi_0702 0.24 +0.4
795,200 + Echvi_0702 0.26 -0.7
795,201 - Echvi_0702 0.26 -0.3
795,201 - Echvi_0702 0.26 +0.7
795,201 - Echvi_0702 0.26 +1.4
795,203 + Echvi_0702 0.26 -0.0
795,203 + Echvi_0702 0.26 -0.5
795,204 - Echvi_0702 0.26 +0.8
795,221 + Echvi_0702 0.28 +1.9
795,221 + Echvi_0702 0.28 +0.5
795,222 - Echvi_0702 0.28 -0.5
795,222 - Echvi_0702 0.28 -1.7
795,222 - Echvi_0702 0.28 +1.3
795,287 + Echvi_0702 0.33 +0.5
795,287 + Echvi_0702 0.33 +0.7
795,287 + Echvi_0702 0.33 +0.8
795,287 + Echvi_0702 0.33 +1.2
795,287 + Echvi_0702 0.33 -1.7
795,288 - Echvi_0702 0.33 +0.9
795,288 - Echvi_0702 0.33 +0.8
795,288 - Echvi_0702 0.33 +0.3
795,288 - Echvi_0702 0.33 -0.3
795,288 - Echvi_0702 0.33 +1.0
795,288 - Echvi_0702 0.33 -0.9
795,291 + Echvi_0702 0.34 +1.1
795,291 + Echvi_0702 0.34 +1.2
795,291 + Echvi_0702 0.34 +1.3
795,291 + Echvi_0702 0.34 +0.6
795,292 - Echvi_0702 0.34 -0.3
795,292 - Echvi_0702 0.34 -0.7
795,344 + Echvi_0702 0.38 +0.2
795,345 - Echvi_0702 0.38 +1.4
795,345 - Echvi_0702 0.38 +1.5
795,392 + Echvi_0702 0.42 -0.3
795,393 - Echvi_0702 0.42 +0.8
795,395 - Echvi_0702 0.42 -0.5
795,421 + Echvi_0702 0.45 +0.3
795,421 + Echvi_0702 0.45 +0.2
795,421 + Echvi_0702 0.45 +0.8
795,422 - Echvi_0702 0.45 +0.1
795,422 - Echvi_0702 0.45 +0.5
795,447 + Echvi_0702 0.47 -1.0
795,447 + Echvi_0702 0.47 +0.9
795,447 + Echvi_0702 0.47 +0.0
795,447 + Echvi_0702 0.47 +0.9
795,447 + Echvi_0702 0.47 -0.8
795,447 + Echvi_0702 0.47 -0.4
795,448 - Echvi_0702 0.47 +0.6
795,449 + Echvi_0702 0.47 +1.6
795,449 + Echvi_0702 0.47 -0.7
795,450 - Echvi_0702 0.47 +3.0
795,455 - Echvi_0702 0.48 +0.8
795,455 - Echvi_0702 0.48 +1.4
795,534 + Echvi_0702 0.54 +0.3
795,545 - Echvi_0702 0.55 -0.6
795,566 + Echvi_0702 0.57 +0.6
795,566 + Echvi_0702 0.57 +1.1
795,574 + Echvi_0702 0.58 -2.8
795,589 + Echvi_0702 0.59 +0.4
795,589 + Echvi_0702 0.59 -0.1
795,593 + Echvi_0702 0.59 +0.2
795,594 - Echvi_0702 0.59 +0.0
795,596 - Echvi_0702 0.60 +0.1
795,600 + Echvi_0702 0.60 -1.7
795,600 + Echvi_0702 0.60 -2.4
795,600 + Echvi_0702 0.60 -0.3
795,604 + Echvi_0702 0.60 +0.7
795,605 - Echvi_0702 0.60 -1.7
795,605 - Echvi_0702 0.60 +1.1
795,616 + Echvi_0702 0.61 +0.2
795,676 - Echvi_0702 0.66 +0.0
795,690 + Echvi_0702 0.68 -1.0
795,691 - Echvi_0702 0.68 -0.5
795,735 + Echvi_0702 0.71 +0.0
795,743 - Echvi_0702 0.72 -1.4
795,743 - Echvi_0702 0.72 -2.1
795,770 - Echvi_0702 0.74 -0.1
795,781 + Echvi_0702 0.75 +0.5
795,801 + Echvi_0702 0.77 -2.1
795,803 + Echvi_0702 0.77 +0.1
795,809 + Echvi_0702 0.78 +0.5
795,810 - Echvi_0702 0.78 -0.8
795,813 - Echvi_0702 0.78 +0.1
795,816 + Echvi_0702 0.78 +0.3
795,827 - Echvi_0702 0.79 -0.8
795,844 + Echvi_0702 0.81 +0.5
795,845 - Echvi_0702 0.81 +0.2
795,847 + Echvi_0702 0.81 -0.4
795,847 + Echvi_0702 0.81 -0.1
795,847 + Echvi_0702 0.81 +0.5
795,847 + Echvi_0702 0.81 -0.9
795,848 - Echvi_0702 0.81 -0.8
795,848 - Echvi_0702 0.81 +0.4
795,904 + Echvi_0702 0.86 -1.3
795,905 - Echvi_0702 0.86 +0.6
795,924 + Echvi_0702 0.87 -0.9
795,926 + Echvi_0702 0.88 -0.4
795,926 + Echvi_0702 0.88 +0.5
795,926 + Echvi_0702 0.88 -0.4
795,958 - +0.2
796,001 - +0.6
796,015 + +0.6
796,016 - +0.2
796,024 - +0.1
796,024 - +0.0
796,024 - +0.0
796,071 - +0.1
796,074 - +0.0
796,094 - +0.9
796,120 + Echvi_0703 0.14 +0.3
796,167 + Echvi_0703 0.24 +1.0
796,168 - Echvi_0703 0.24 -1.7
796,174 + Echvi_0703 0.25 +0.9
796,175 - Echvi_0703 0.25 -0.1
796,175 - Echvi_0703 0.25 -0.0
796,175 - Echvi_0703 0.25 -1.3
796,178 + Echvi_0703 0.26 -0.9
796,178 + Echvi_0703 0.26 +0.6
796,179 - Echvi_0703 0.26 +0.6
796,212 + Echvi_0703 0.33 -1.1
796,213 - Echvi_0703 0.33 -0.9
796,222 + Echvi_0703 0.35 -0.3
796,222 + Echvi_0703 0.35 -2.0
796,222 + Echvi_0703 0.35 -0.1
796,232 + Echvi_0703 0.37 -0.2
796,232 + Echvi_0703 0.37 -1.7
796,257 - Echvi_0703 0.42 +0.0
796,274 + Echvi_0703 0.46 -0.0
796,275 - Echvi_0703 0.46 +1.1
796,337 - Echvi_0703 0.58 -1.4
796,337 - Echvi_0703 0.58 -0.6
796,345 - Echvi_0703 0.60 -0.4
796,401 + Echvi_0703 0.71 -0.2
796,401 + Echvi_0703 0.71 +0.0
796,401 + Echvi_0703 0.71 -1.0
796,402 - Echvi_0703 0.72 -0.9
796,433 + Echvi_0703 0.78 +0.2
796,434 - Echvi_0703 0.78 -1.2
796,434 - Echvi_0703 0.78 +0.1
796,463 + Echvi_0703 0.84 +0.6
796,464 - Echvi_0703 0.84 -0.7
796,486 + Echvi_0703 0.89 -0.2
796,487 - Echvi_0703 0.89 +0.5
796,512 - +0.1
796,539 + +0.3
796,540 - +0.6
796,540 - -0.7
796,557 - -0.7
796,558 + -1.2
796,570 + -1.0
796,570 + +1.0
796,571 - +1.4
796,571 - +0.6
796,571 - +0.3
796,636 + +1.0
796,637 - -0.1
796,648 + +2.4
796,648 + +1.1
796,648 + +0.2
796,649 - -1.1
796,649 - +0.1
796,649 - -1.0
796,661 + +0.4
796,681 + -0.5
796,712 - -0.3
796,784 - Echvi_0704 0.25 -1.2
796,784 - Echvi_0704 0.25 +0.5
796,787 + Echvi_0704 0.25 -1.2
796,787 + Echvi_0704 0.25 +0.0
796,787 + Echvi_0704 0.25 +0.5
796,788 - Echvi_0704 0.26 +0.0
796,792 - Echvi_0704 0.26 -1.2
796,797 + Echvi_0704 0.27 +0.2
796,797 + Echvi_0704 0.27 -1.2
796,798 - Echvi_0704 0.28 +0.0
796,798 - Echvi_0704 0.28 -2.9
796,826 + Echvi_0704 0.34 +0.5
796,864 + Echvi_0704 0.42 +0.6
796,864 + Echvi_0704 0.42 -0.0
796,864 + Echvi_0704 0.42 +0.5
796,864 + Echvi_0704 0.42 -0.3
796,927 + Echvi_0704 0.56 -0.8
796,927 + Echvi_0704 0.56 +0.3
796,927 + Echvi_0704 0.56 -1.5
796,927 + Echvi_0704 0.56 +0.3
796,931 - Echvi_0704 0.56 +0.3
796,931 - Echvi_0704 0.56 +0.7
796,936 + Echvi_0704 0.58 -0.7
796,979 - Echvi_0704 0.67 +0.8
797,003 - Echvi_0704 0.72 -0.2
797,003 - Echvi_0704 0.72 +1.2
797,003 - Echvi_0704 0.72 -0.4

Or see this region's nucleotide sequence