Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0644

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0643 and Echvi_0644 are separated by 62 nucleotidesEchvi_0644 and Echvi_0645 are separated by 6 nucleotidesEchvi_0645 and Echvi_0646 are separated by 22 nucleotides Echvi_0643: Echvi_0643 - 1-aminocyclopropane-1-carboxylate deaminase, at 727,181 to 728,110 _0643 Echvi_0644: Echvi_0644 - hypothetical protein, at 728,173 to 728,682 _0644 Echvi_0645: Echvi_0645 - Uncharacterized protein conserved in bacteria, at 728,689 to 729,291 _0645 Echvi_0646: Echvi_0646 - Cyanate permease, at 729,314 to 730,492 _0646 Position (kb) 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 727.185 kb on + strandat 727.185 kb on + strandat 727.317 kb on - strand, within Echvi_0643at 727.325 kb on - strand, within Echvi_0643at 727.328 kb on + strand, within Echvi_0643at 727.368 kb on + strand, within Echvi_0643at 727.399 kb on + strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.400 kb on - strand, within Echvi_0643at 727.604 kb on + strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.649 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.691 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.975 kb on - strand, within Echvi_0643at 727.997 kb on - strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 727.999 kb on + strand, within Echvi_0643at 728.064 kb on + strandat 728.064 kb on + strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.065 kb on - strandat 728.113 kb on + strandat 728.157 kb on + strandat 728.158 kb on - strandat 728.162 kb on + strandat 728.226 kb on - strand, within Echvi_0644at 728.277 kb on - strand, within Echvi_0644at 728.277 kb on - strand, within Echvi_0644at 728.340 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.481 kb on + strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.482 kb on - strand, within Echvi_0644at 728.483 kb on + strand, within Echvi_0644at 728.576 kb on - strand, within Echvi_0644at 728.616 kb on + strand, within Echvi_0644at 728.617 kb on - strand, within Echvi_0644at 728.682 kb on + strandat 728.721 kb on + strandat 728.748 kb on + strandat 728.748 kb on + strandat 728.749 kb on - strandat 728.749 kb on - strandat 728.790 kb on - strand, within Echvi_0645at 728.859 kb on + strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.860 kb on - strand, within Echvi_0645at 728.866 kb on + strand, within Echvi_0645at 728.867 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 728.934 kb on - strand, within Echvi_0645at 729.019 kb on + strand, within Echvi_0645at 729.020 kb on - strand, within Echvi_0645at 729.023 kb on + strand, within Echvi_0645at 729.024 kb on - strand, within Echvi_0645at 729.060 kb on - strand, within Echvi_0645at 729.113 kb on - strand, within Echvi_0645at 729.134 kb on - strand, within Echvi_0645at 729.242 kb on + strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.243 kb on - strandat 729.246 kb on + strandat 729.246 kb on + strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.247 kb on - strandat 729.252 kb on + strandat 729.252 kb on + strandat 729.253 kb on - strandat 729.371 kb on + strandat 729.371 kb on + strandat 729.372 kb on - strandat 729.372 kb on - strandat 729.399 kb on + strandat 729.456 kb on + strand, within Echvi_0646at 729.456 kb on + strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.457 kb on - strand, within Echvi_0646at 729.459 kb on + strand, within Echvi_0646at 729.459 kb on + strand, within Echvi_0646at 729.460 kb on - strand, within Echvi_0646at 729.583 kb on + strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.599 kb on - strand, within Echvi_0646at 729.633 kb on + strand, within Echvi_0646at 729.634 kb on - strand, within Echvi_0646

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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727,185 + -0.3
727,185 + -0.1
727,317 - Echvi_0643 0.15 +0.1
727,325 - Echvi_0643 0.15 +0.2
727,328 + Echvi_0643 0.16 +0.0
727,368 + Echvi_0643 0.20 -0.2
727,399 + Echvi_0643 0.23 -1.7
727,400 - Echvi_0643 0.24 +1.6
727,400 - Echvi_0643 0.24 -0.9
727,604 + Echvi_0643 0.45 -0.2
727,649 - Echvi_0643 0.50 -0.6
727,649 - Echvi_0643 0.50 -0.7
727,649 - Echvi_0643 0.50 +0.4
727,691 - Echvi_0643 0.55 +1.8
727,691 - Echvi_0643 0.55 -0.8
727,975 - Echvi_0643 0.85 -0.0
727,975 - Echvi_0643 0.85 -1.5
727,997 - Echvi_0643 0.88 -0.7
727,999 + Echvi_0643 0.88 -0.4
727,999 + Echvi_0643 0.88 +1.2
728,064 + -0.7
728,064 + -0.5
728,065 - +0.4
728,065 - -0.5
728,065 - -0.5
728,113 + +0.9
728,157 + -0.3
728,158 - +1.6
728,162 + +0.3
728,226 - Echvi_0644 0.10 -0.1
728,277 - Echvi_0644 0.20 -0.7
728,277 - Echvi_0644 0.20 -0.1
728,340 + Echvi_0644 0.33 +0.6
728,481 + Echvi_0644 0.60 -3.1
728,481 + Echvi_0644 0.60 -2.7
728,482 - Echvi_0644 0.61 -0.1
728,482 - Echvi_0644 0.61 -0.7
728,483 + Echvi_0644 0.61 -1.0
728,576 - Echvi_0644 0.79 +0.3
728,616 + Echvi_0644 0.87 -0.3
728,617 - Echvi_0644 0.87 -0.9
728,682 + -0.7
728,721 + -0.6
728,748 + +0.3
728,748 + +0.0
728,749 - +0.3
728,749 - +0.0
728,790 - Echvi_0645 0.17 +0.6
728,859 + Echvi_0645 0.28 +0.1
728,860 - Echvi_0645 0.28 -0.4
728,860 - Echvi_0645 0.28 +2.1
728,866 + Echvi_0645 0.29 -0.3
728,867 - Echvi_0645 0.30 -0.4
728,934 - Echvi_0645 0.41 +1.4
728,934 - Echvi_0645 0.41 -2.7
728,934 - Echvi_0645 0.41 -1.1
728,934 - Echvi_0645 0.41 +0.3
728,934 - Echvi_0645 0.41 +0.2
728,934 - Echvi_0645 0.41 -1.4
729,019 + Echvi_0645 0.55 -1.4
729,020 - Echvi_0645 0.55 -0.5
729,023 + Echvi_0645 0.55 -1.3
729,024 - Echvi_0645 0.56 -1.6
729,060 - Echvi_0645 0.62 -0.7
729,113 - Echvi_0645 0.70 +1.1
729,134 - Echvi_0645 0.74 -0.2
729,242 + -0.1
729,243 - +0.3
729,243 - -0.7
729,243 - -2.7
729,243 - -1.2
729,246 + -0.5
729,246 + -0.1
729,247 - +0.5
729,247 - +0.6
729,247 - -1.0
729,247 - -0.7
729,252 + -2.2
729,252 + -1.0
729,253 - +0.6
729,371 + -1.2
729,371 + -1.3
729,372 - +1.8
729,372 - +1.9
729,399 + +0.5
729,456 + Echvi_0646 0.12 +2.6
729,456 + Echvi_0646 0.12 +0.4
729,457 - Echvi_0646 0.12 +1.4
729,457 - Echvi_0646 0.12 +1.2
729,457 - Echvi_0646 0.12 +1.9
729,457 - Echvi_0646 0.12 +1.0
729,457 - Echvi_0646 0.12 +1.4
729,459 + Echvi_0646 0.12 +2.0
729,459 + Echvi_0646 0.12 -0.0
729,460 - Echvi_0646 0.12 +0.3
729,583 + Echvi_0646 0.23 +0.2
729,599 - Echvi_0646 0.24 +0.6
729,599 - Echvi_0646 0.24 +1.9
729,599 - Echvi_0646 0.24 +1.6
729,599 - Echvi_0646 0.24 +1.0
729,599 - Echvi_0646 0.24 +2.0
729,633 + Echvi_0646 0.27 +0.4
729,634 - Echvi_0646 0.27 +1.4

Or see this region's nucleotide sequence