Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0509

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0508 and Echvi_0509 are separated by 109 nucleotidesEchvi_0509 and Echvi_0510 are separated by 151 nucleotides Echvi_0508: Echvi_0508 - L-fucose:H+ symporter permease, at 567,670 to 568,965 _0508 Echvi_0509: Echvi_0509 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 569,075 to 570,109 _0509 Echvi_0510: Echvi_0510 - Transcriptional regulators, at 570,261 to 571,283 _0510 Position (kb) 569 570 571Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 568.086 kb on + strand, within Echvi_0508at 568.094 kb on - strand, within Echvi_0508at 568.094 kb on - strand, within Echvi_0508at 568.094 kb on - strand, within Echvi_0508at 568.110 kb on - strand, within Echvi_0508at 568.110 kb on - strand, within Echvi_0508at 568.110 kb on - strand, within Echvi_0508at 568.157 kb on + strand, within Echvi_0508at 568.167 kb on + strand, within Echvi_0508at 568.170 kb on - strand, within Echvi_0508at 568.177 kb on + strand, within Echvi_0508at 568.196 kb on - strand, within Echvi_0508at 568.200 kb on - strand, within Echvi_0508at 568.361 kb on + strand, within Echvi_0508at 568.362 kb on - strand, within Echvi_0508at 568.362 kb on - strand, within Echvi_0508at 568.362 kb on - strand, within Echvi_0508at 568.362 kb on - strand, within Echvi_0508at 568.397 kb on - strand, within Echvi_0508at 568.477 kb on - strand, within Echvi_0508at 568.574 kb on + strand, within Echvi_0508at 568.574 kb on + strand, within Echvi_0508at 568.574 kb on + strand, within Echvi_0508at 568.575 kb on - strand, within Echvi_0508at 568.575 kb on - strand, within Echvi_0508at 568.623 kb on - strand, within Echvi_0508at 568.623 kb on - strand, within Echvi_0508at 568.623 kb on - strand, within Echvi_0508at 568.646 kb on + strand, within Echvi_0508at 568.647 kb on - strand, within Echvi_0508at 568.726 kb on - strand, within Echvi_0508at 568.727 kb on + strand, within Echvi_0508at 568.728 kb on - strand, within Echvi_0508at 568.728 kb on - strand, within Echvi_0508at 568.731 kb on + strand, within Echvi_0508at 568.732 kb on - strand, within Echvi_0508at 568.733 kb on + strand, within Echvi_0508at 568.745 kb on + strand, within Echvi_0508at 568.745 kb on + strand, within Echvi_0508at 568.746 kb on - strand, within Echvi_0508at 568.775 kb on + strand, within Echvi_0508at 568.776 kb on - strand, within Echvi_0508at 568.801 kb on - strand, within Echvi_0508at 568.816 kb on - strand, within Echvi_0508at 568.857 kb on + strandat 568.858 kb on - strandat 568.858 kb on - strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.911 kb on + strandat 568.912 kb on - strandat 568.912 kb on - strandat 568.912 kb on - strandat 568.912 kb on - strandat 568.912 kb on - strandat 568.912 kb on - strandat 568.936 kb on + strandat 568.950 kb on + strandat 568.974 kb on + strandat 569.018 kb on + strandat 569.029 kb on + strandat 569.353 kb on - strand, within Echvi_0509at 569.353 kb on - strand, within Echvi_0509at 569.353 kb on - strand, within Echvi_0509at 569.353 kb on - strand, within Echvi_0509at 569.404 kb on + strand, within Echvi_0509at 569.404 kb on + strand, within Echvi_0509at 569.405 kb on - strand, within Echvi_0509at 569.405 kb on - strand, within Echvi_0509at 569.434 kb on + strand, within Echvi_0509at 569.434 kb on + strand, within Echvi_0509at 569.601 kb on + strand, within Echvi_0509at 569.664 kb on + strand, within Echvi_0509at 569.664 kb on + strand, within Echvi_0509at 569.664 kb on + strand, within Echvi_0509at 569.664 kb on + strand, within Echvi_0509at 569.665 kb on - strand, within Echvi_0509at 569.665 kb on - strand, within Echvi_0509at 569.703 kb on + strand, within Echvi_0509at 569.755 kb on - strand, within Echvi_0509at 569.938 kb on - strand, within Echvi_0509at 569.977 kb on - strand, within Echvi_0509at 570.009 kb on - strandat 570.114 kb on - strandat 570.114 kb on - strandat 570.154 kb on + strandat 570.405 kb on + strand, within Echvi_0510at 570.406 kb on - strand, within Echvi_0510at 570.408 kb on - strand, within Echvi_0510at 570.487 kb on - strand, within Echvi_0510at 570.514 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.543 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.553 kb on + strand, within Echvi_0510at 570.554 kb on - strand, within Echvi_0510at 570.613 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.694 kb on + strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.695 kb on - strand, within Echvi_0510at 570.779 kb on + strand, within Echvi_0510at 570.780 kb on - strand, within Echvi_0510at 570.892 kb on + strand, within Echvi_0510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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568,086 + Echvi_0508 0.32 +1.1
568,094 - Echvi_0508 0.33 +0.0
568,094 - Echvi_0508 0.33 +0.5
568,094 - Echvi_0508 0.33 +0.2
568,110 - Echvi_0508 0.34 -0.2
568,110 - Echvi_0508 0.34 +0.3
568,110 - Echvi_0508 0.34 +0.8
568,157 + Echvi_0508 0.38 -0.6
568,167 + Echvi_0508 0.38 +1.1
568,170 - Echvi_0508 0.39 +0.6
568,177 + Echvi_0508 0.39 -0.3
568,196 - Echvi_0508 0.41 +0.0
568,200 - Echvi_0508 0.41 +1.2
568,361 + Echvi_0508 0.53 -0.0
568,362 - Echvi_0508 0.53 +1.4
568,362 - Echvi_0508 0.53 -1.1
568,362 - Echvi_0508 0.53 +0.4
568,362 - Echvi_0508 0.53 +1.1
568,397 - Echvi_0508 0.56 +0.4
568,477 - Echvi_0508 0.62 +0.2
568,574 + Echvi_0508 0.70 +0.6
568,574 + Echvi_0508 0.70 +0.3
568,574 + Echvi_0508 0.70 -1.6
568,575 - Echvi_0508 0.70 -0.6
568,575 - Echvi_0508 0.70 -0.2
568,623 - Echvi_0508 0.74 +0.4
568,623 - Echvi_0508 0.74 +0.7
568,623 - Echvi_0508 0.74 -0.9
568,646 + Echvi_0508 0.75 +0.2
568,647 - Echvi_0508 0.75 +1.3
568,726 - Echvi_0508 0.81 +0.4
568,727 + Echvi_0508 0.82 -0.7
568,728 - Echvi_0508 0.82 -0.1
568,728 - Echvi_0508 0.82 +0.9
568,731 + Echvi_0508 0.82 +1.3
568,732 - Echvi_0508 0.82 +0.4
568,733 + Echvi_0508 0.82 -0.4
568,745 + Echvi_0508 0.83 +0.9
568,745 + Echvi_0508 0.83 -0.6
568,746 - Echvi_0508 0.83 -0.5
568,775 + Echvi_0508 0.85 +1.0
568,776 - Echvi_0508 0.85 +0.0
568,801 - Echvi_0508 0.87 +0.5
568,816 - Echvi_0508 0.88 -1.1
568,857 + +0.0
568,858 - +0.0
568,858 - +0.0
568,911 + +0.7
568,911 + -1.0
568,911 + +0.3
568,911 + +1.3
568,911 + +1.3
568,911 + -0.7
568,912 - +2.3
568,912 - +0.4
568,912 - +0.5
568,912 - +0.4
568,912 - +0.7
568,912 - -0.8
568,936 + +1.9
568,950 + -0.2
568,974 + +0.8
569,018 + -0.7
569,029 + -1.0
569,353 - Echvi_0509 0.27 +1.8
569,353 - Echvi_0509 0.27 -1.2
569,353 - Echvi_0509 0.27 +1.0
569,353 - Echvi_0509 0.27 +0.5
569,404 + Echvi_0509 0.32 +0.2
569,404 + Echvi_0509 0.32 -1.5
569,405 - Echvi_0509 0.32 -1.4
569,405 - Echvi_0509 0.32 -0.5
569,434 + Echvi_0509 0.35 -0.4
569,434 + Echvi_0509 0.35 +0.7
569,601 + Echvi_0509 0.51 +1.4
569,664 + Echvi_0509 0.57 -1.1
569,664 + Echvi_0509 0.57 -1.2
569,664 + Echvi_0509 0.57 -0.2
569,664 + Echvi_0509 0.57 -0.2
569,665 - Echvi_0509 0.57 -0.3
569,665 - Echvi_0509 0.57 -1.2
569,703 + Echvi_0509 0.61 -0.4
569,755 - Echvi_0509 0.66 +0.6
569,938 - Echvi_0509 0.83 +0.3
569,977 - Echvi_0509 0.87 -0.9
570,009 - -0.4
570,114 - -0.5
570,114 - -3.1
570,154 + -0.6
570,405 + Echvi_0510 0.14 +2.6
570,406 - Echvi_0510 0.14 -0.4
570,408 - Echvi_0510 0.14 +1.0
570,487 - Echvi_0510 0.22 +0.6
570,514 + Echvi_0510 0.25 +3.0
570,543 + Echvi_0510 0.28 +0.4
570,543 + Echvi_0510 0.28 +0.5
570,543 + Echvi_0510 0.28 -1.4
570,553 + Echvi_0510 0.29 -1.0
570,553 + Echvi_0510 0.29 -0.0
570,553 + Echvi_0510 0.29 +0.4
570,554 - Echvi_0510 0.29 +1.0
570,613 + Echvi_0510 0.34 -1.3
570,694 + Echvi_0510 0.42 +0.7
570,694 + Echvi_0510 0.42 +1.8
570,694 + Echvi_0510 0.42 +0.7
570,694 + Echvi_0510 0.42 +2.2
570,694 + Echvi_0510 0.42 +1.9
570,695 - Echvi_0510 0.42 -1.2
570,695 - Echvi_0510 0.42 +0.5
570,695 - Echvi_0510 0.42 +0.6
570,779 + Echvi_0510 0.51 -1.4
570,780 - Echvi_0510 0.51 -0.3
570,892 + Echvi_0510 0.62 +0.1

Or see this region's nucleotide sequence